View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_high_7 (Length: 239)
Name: NF18778_high_7
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 16192980 - 16193200
Alignment:
| Q |
19 |
atcttccatttcaacacaaaaatgtcagaaacagtgatatcttaactatcacaaacaattaatacggagaaaaactgaacaagaatcatgtttcttttag |
118 |
Q |
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| T |
16192980 |
atcttccatttcaacacaaaaatgtcagaaacagtgatatcttaactatcacaaacaattaataaggagaaaaactgaaaaagaatgatgtttcttttag |
16193079 |
T |
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| Q |
119 |
tactcataagccttacaaaatggttttggtaccaagtgattgtcaaaacttgttatcaaactgcaagcatattgatatataattgctttaattttgttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
16193080 |
tactcataagccttacaaaatggttttggtaccatatgattatcaaaacttgttatcaaactgcaaggatattgatacataatggctttaattttgttga |
16193179 |
T |
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| Q |
219 |
tctttcatctaagccacttca |
239 |
Q |
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||||||||||||||||||||| |
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| T |
16193180 |
tctttcatctaagccacttca |
16193200 |
T |
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