View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18778_low_10 (Length: 250)

Name: NF18778_low_10
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18778_low_10
NF18778_low_10
[»] chr4 (33 HSPs)
chr4 (20-239)||(48852947-48853166)
chr4 (23-239)||(49043744-49043960)
chr4 (66-239)||(49038460-49038627)
chr4 (20-176)||(45371713-45371869)
chr4 (106-179)||(7790432-7790505)
chr4 (106-239)||(45365796-45365929)
chr4 (106-179)||(7773461-7773534)
chr4 (106-178)||(7878735-7878807)
chr4 (114-176)||(48864395-48864457)
chr4 (106-179)||(7771747-7771820)
chr4 (113-170)||(48147358-48147415)
chr4 (23-239)||(49048131-49048346)
chr4 (108-179)||(7908656-7908727)
chr4 (102-197)||(48861636-48861731)
chr4 (106-176)||(7765994-7766064)
chr4 (115-179)||(7813838-7813902)
chr4 (112-176)||(45384531-45384595)
chr4 (106-176)||(7786816-7786886)
chr4 (62-173)||(37826632-37826749)
chr4 (115-179)||(7800998-7801062)
chr4 (113-172)||(48156072-48156131)
chr4 (106-173)||(50666667-50666734)
chr4 (106-172)||(7237386-7237452)
chr4 (109-179)||(48870915-48870985)
chr4 (109-179)||(48876219-48876289)
chr4 (109-179)||(48886601-48886671)
chr4 (115-163)||(48903316-48903364)
chr4 (60-179)||(48863571-48863690)
chr4 (106-145)||(48899092-48899131)
chr4 (117-179)||(7823332-7823394)
chr4 (23-89)||(45384630-45384696)
chr4 (34-82)||(48861541-48861589)
chr4 (116-164)||(50672860-50672908)
[»] chr3 (4 HSPs)
chr3 (42-172)||(11005571-11005701)
chr3 (42-172)||(11024146-11024276)
chr3 (30-172)||(11015134-11015276)
chr3 (23-176)||(47451539-47451698)
[»] chr6 (2 HSPs)
chr6 (20-239)||(21016087-21016306)
chr6 (118-176)||(21979267-21979325)
[»] chr5 (5 HSPs)
chr5 (110-238)||(29688485-29688613)
chr5 (66-176)||(42561972-42562082)
chr5 (55-173)||(9120058-9120182)
chr5 (106-158)||(179410-179462)
chr5 (110-173)||(29712083-29712146)
[»] chr7 (1 HSPs)
chr7 (105-176)||(48884175-48884246)
[»] chr8 (7 HSPs)
chr8 (55-164)||(4031577-4031681)
chr8 (115-172)||(12200703-12200760)
chr8 (115-172)||(12445131-12445188)
chr8 (115-176)||(15349244-15349305)
chr8 (113-170)||(4962161-4962221)
chr8 (111-172)||(12195681-12195742)
chr8 (111-172)||(12440109-12440170)
[»] chr1 (6 HSPs)
chr1 (66-175)||(24367477-24367586)
chr1 (66-176)||(24340720-24340833)
chr1 (66-176)||(24353085-24353198)
chr1 (66-173)||(24310525-24310635)
chr1 (108-175)||(24416132-24416199)
chr1 (123-176)||(24323139-24323192)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 48852947 - 48853166
Alignment:
Q  20 gtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48852947 gtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggtcatgggggatgatacagttgaa 48853046  T
Q  120 atatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttccccaatatgtt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48853047 atatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttttagttccattcccactcactacttttccccaatatgtt 48853146  T
Q  220 gtacaaagagtggtgatatt 239  Q
    ||||||||||||||||||||    
T  48853147 gtacaaagagtggtgatatt 48853166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 49043960 - 49043744
Alignment:
Q  23 tttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaata 122  Q
    |||||| | ||||||| | |||||||||||  |||| ||||||||||||||| | ||| |||| ||| ||||| | |    | |||||| ||||||||||    
T  49043960 tttgccaggtgattttgaacatgaacctacagattgtgatttgtgggtatttggtgaacttcttagtgtatggactagacagaatgatatagttgaaata 49043861  T
Q  123 tgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttccccaatatgttgta 222  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||||  |  |  |||||||||||| |||||  | |||||||||||||    
T  49043860 tgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcattacttcgctccaatatgttgta 49043761  T
Q  223 caaagagtggtgatatt 239  Q
    |||| | ||||||||||    
T  49043760 caaaaattggtgatatt 49043744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 49038627 - 49038460
Alignment:
Q  66 tgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaaga 165  Q
    ||||||||| |||||||||| ||| ||||||| |||| |  || ||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  49038627 tgggtatttcgagaatttctcagtgtatgggctatggagcgtgctaccgttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaaga 49038528  T
Q  166 ctcttgttctttcttgtagttccattcccactcactacttttccccaatatgttgtacaaagagtggtgatatt 239  Q
    |||||||||| |||  ||||  ||||||      |||||||||||| |||||||||||||| |||||| |||||    
T  49038527 ctcttgttctgtctattagtggcattcc------ctacttttcccctatatgttgtacaaaaagtggtcatatt 49038460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 45371869 - 45371713
Alignment:
Q  20 gtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaa 119  Q
    ||||||||| |||| |||| ||| ||  ||||| ||||| ||||| ||||||||  || ||||||| ||| | ||||| | |  ||| ||||||||||||    
T  45371869 gtctttgcctgatggttttgaccctggtcctacatattgtgatttttgggtattcggaaaatttctcagtctttgggctaagaaggaagatacagttgaa 45371770  T
Q  120 atatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  45371769 atatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttctt 45371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 7790432 - 7790505
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  7790432 atgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttct 7790505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 45365929 - 45365796
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactactt 205  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||  |||||| ||  |  |  |||||||||||| |||||    
T  45365929 atgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatactt 45365830  T
Q  206 ttccccaatatgttgtacaaagagtggtgatatt 239  Q
    ||||||  |||| | |||||| || |||||||||    
T  45365829 ttcccctttatgctctacaaaaagcggtgatatt 45365796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 7773534 - 7773461
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||  ||||||||||||||    
T  7773534 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctttct 7773461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 7878735 - 7878807
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttc 178  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||||||||||||||    
T  7878735 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttc 7878807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 48864395 - 48864457
Alignment:
Q  114 gttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttctt 48864457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 7771747 - 7771820
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    |||||||| ||| ||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  7771747 atgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttct 7771820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 48147415 - 48147358
Alignment:
Q  113 agttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactctt 170  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  48147415 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 49048346 - 49048131
Alignment:
Q  23 tttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaata 122  Q
    |||||| | ||||||| | ||| |||||||  |||| ||||||||||||||  | || ||||| ||| ||||| | | |  |||||||| ||||||||||    
T  49048346 tttgccaggtgattttgaacattaacctacagattgtgatttgtgggtattg-gtgagtttctcagtgtatggactaagcaggatgatatagttgaaata 49048248  T
Q  123 tgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttccccaatatgttgta 222  Q
    ||||| |||||||| || ||||||| |||||| |||||||||||| ||||| |||||  |  |  ||||||||| || | ||| || ||||||||  |||    
T  49048247 tgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcattcccacccattgcttctctccaatatgccgta 49048148  T
Q  223 caaagagtggtgatatt 239  Q
    |||| ||||||||||||    
T  49048147 caaaaagtggtgatatt 49048131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 7908656 - 7908727
Alignment:
Q  108 gatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||| ||||||| ||| |||||||||||||||    
T  7908656 gatacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttct 7908727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 48861636 - 48861731
Alignment:
Q  102 ggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccact 197  Q
    |||||||||||| ||||||||||||| || |||||||||||||||| || |||||||||||| ||| ||    |||||| ||||||||||||||||    
T  48861636 ggggatgatacatttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaatactatttccttttcttttagttccattcccact 48861731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 7765994 - 7766064
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    |||||||| ||||||||||||| ||||||||||||||||||  |||||| ||||||||||| |||||||||    
T  7765994 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 7766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 7813838 - 7813902
Alignment:
Q  115 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    |||||||||||||  |||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctttct 7813902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 45384595 - 45384531
Alignment:
Q  112 cagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||| |||||||    
T  45384595 cagttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttctt 45384531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 7786816 - 7786886
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    |||||||| ||||||||||||| |||||||||||||| |||| ||  ||||||| ||||||||||||||||    
T  7786816 atgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttctt 7786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 37826749 - 37826632
Alignment:
Q  62 tttgtgggtatttagagaatttctaagtatatgggccatggggg------atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtct 155  Q
    ||||||||||||| |||||||||| ||| |||||||||||||        || ||||| || || || |||| ||||||||||||||| ||| |||||||    
T  37826749 tttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcgtct 37826650  T
Q  156 tggactaagactcttgtt 173  Q
    ||||||||||||||||||    
T  37826649 tggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 7800998 - 7801062
Alignment:
Q  115 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    |||||||||||||  ||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttct 7801062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 48156131 - 48156072
Alignment:
Q  113 agttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 172  Q
    ||||||||||||||| ||||| ||||||||||||| ||| ||||||||||| ||||||||    
T  48156131 agttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 50666667 - 50666734
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgtt 173  Q
    |||||||| ||||| ||||||| ||| ||||||||||||||| ||| ||||||||||| |||||||||    
T  50666667 atgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 7237452 - 7237386
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 172  Q
    |||||||| ||| ||||||||| ||||||||||||||| ||| ||||| ||||||||| ||||||||    
T  7237452 atgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 48870915 - 48870985
Alignment:
Q  109 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    ||||| ||||||| ||||| ||||| ||||||||||||   ||||||||||| ||||||||||||||||||    
T  48870915 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttct 48870985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 48876219 - 48876289
Alignment:
Q  109 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    ||||| ||||||| ||||| ||||| ||||||||||||   ||||||||||| ||||||||||||||||||    
T  48876219 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttct 48876289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 48886601 - 48886671
Alignment:
Q  109 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    ||||| ||||||| ||||| ||||| ||||||||||||   ||||||||||| ||||||||||||||||||    
T  48886601 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttct 48886671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 48903316 - 48903364
Alignment:
Q  115 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaa 163  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaa 48903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 48863571 - 48863690
Alignment:
Q  60 gatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttgga 159  Q
    ||||| ||||||||||||| || ||| ||| ||||||    ||||||| |||  ||||| |||||||| ||| ||||||||  ||||| ||| |||||||    
T  48863571 gatttatgggtatttagaggatctctcagtctatgggtttcgggggatcataaggttgacatatgggtgatggaagaatacggagtgcattcatcttgga 48863670  T
Q  160 ctaagactcttgttctttct 179  Q
     ||| |||||||| ||||||    
T  48863671 ttaaaactcttgtgctttct 48863690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 48899092 - 48899131
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagt 145  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  48899092 atgatacagttgaaatatgggtgatgaaagaatataaagt 48899131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 7823332 - 7823394
Alignment:
Q  117 gaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 179  Q
    |||||||||||  | ||||| |||||||||| || |||||||| ||| |||||||||||||||    
T  7823332 gaaatatgggtgtttaaagattacaaagtgcatttgtcttggaataaaactcttgttctttct 7823394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 45384696 - 45384630
Alignment:
Q  23 tttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagt 89  Q
    |||||| ||||| ||| ||| |||||||||| |||| | ||||||||||||| |||||||||| |||    
T  45384696 tttgccagatgagtttaaccgtgaacctaccgattgtggtttgtgggtatttggagaatttctcagt 45384630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 48861541 - 48861589
Alignment:
Q  34 atttttaccatgaacctacctattgcgatttgtgggtatttagagaatt 82  Q
    ||||| ||||||||||||| ||||| |||||||||||||| ||| ||||    
T  48861541 attttgaccatgaacctacatattgtgatttgtgggtattaagaaaatt 48861589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 50672860 - 50672908
Alignment:
Q  116 tgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaag 164  Q
    |||||||||||| |||||| |||||||| ||| |||||| |||||||||    
T  50672860 tgaaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaag 50672908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 11005701 - 11005571
Alignment:
Q  42 catgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaataca 141  Q
    ||||||||||   |||| ||||||||| ||||| |||||||||| ||| ||||||| ||||||||||| ||| ||||||||||||| |||||||||||||    
T  11005701 catgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaatatgggttatgaaagaataca 11005602  T
Q  142 aagtgcgttcgtcttggactaagactcttgt 172  Q
    |||||| |||||||||||||||| |||||||    
T  11005601 aagtgcattcgtcttggactaaggctcttgt 11005571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 11024276 - 11024146
Alignment:
Q  42 catgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaataca 141  Q
    ||||||||||   |||| ||||||||| ||||| |||||||||| ||| ||||||| ||||||| ||  ||| ||||||||||||| |||||||||||||    
T  11024276 catgaacctatggattgtgatttgtggatatttggagaatttctcagtctatgggctatggggggtgtaacaattgaaatatgggttatgaaagaataca 11024177  T
Q  142 aagtgcgttcgtcttggactaagactcttgt 172  Q
    |||||| ||||||||||||||||||||||||    
T  11024176 aagtgcattcgtcttggactaagactcttgt 11024146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 11015276 - 11015134
Alignment:
Q  30 gatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtca 129  Q
    |||| |||| || |||||||||   |||| ||||||||| ||||| |||||||||||||| ||||||| |||| |||||  ||||||||||||||||| |    
T  11015276 gatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatgggtta 11015177  T
Q  130 tgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 172  Q
    |||||||||||||||||| ||||||||||  ||| ||||||||    
T  11015176 tgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 11015134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 47451698 - 47451539
Alignment:
Q  23 tttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatggggg------atgatacagtt 116  Q
    |||||| ||||||||| |||||||||||||| |||| | ||||||||||||| |||||||||| ||| || |||   |||         |||||| ||||    
T  47451698 tttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagtt 47451599  T
Q  117 gaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    ||||||||||| |||||||||||||||||   ||||||||||   |||||||||||||||    
T  47451598 gaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttctt 47451539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 21016087 - 21016306
Alignment:
Q  20 gtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaa 119  Q
    |||||||||||||||| |  | ||||||||||  ||||| ||||||||||||||  | |||||| | ||| ||||| | ||||    ||||| |||||||    
T  21016087 gtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtattcggtgaatttttgagtgtatggactatggatagtgatatagttgaa 21016186  T
Q  120 atatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttccccaatatgtt 219  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||||||  | | |||  |  |  |||||||||||  || || || ||||||||||    
T  21016187 atatgggttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcccactcgttatttctctccaatatgtt 21016286  T
Q  220 gtacaaagagtggtgatatt 239  Q
    ||||||| ||||||||||||    
T  21016287 gtacaaaaagtggtgatatt 21016306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 21979325 - 21979267
Alignment:
Q  118 aaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||||  |||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttctt 21979267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 29688485 - 29688613
Alignment:
Q  110 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttcc 209  Q
    |||||||||||||||||| |||||| ||||||| ||||  ||||||||||| |||||||| |||||||||| | ||  |||||||| |||||||||||      
T  29688485 tacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttttgt 29688584  T
Q  210 ccaatatgttgtacaaagagtggtgatat 238  Q
    || | || ||||||||| |||||||||||    
T  29688585 ccgaaatattgtacaaaaagtggtgatat 29688613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 42562082 - 42561972
Alignment:
Q  66 tgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaaga 165  Q
    ||||||||||||| |||||| ||| |||||    || |||| ||||  ||||| |||||||| ||||||||||||||||||| ||| |||||||||||||    
T  42562082 tgggtatttagaggatttctcagtctatggattttgagggacgataatgttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaaga 42561983  T
Q  166 ctcttgttctt 176  Q
     ||||||||||    
T  42561982 ttcttgttctt 42561972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 9120058 - 9120182
Alignment:
Q  55 attgcgatttgtgggtatttagagaatttctaagtatatgggccatggggg------atgatacagttgaaatatgggtcatgaaagaatacaaagtgcg 148  Q
    |||| ||| ||||||||||| |||||||||| ||||||||||| ||||         |||||||||||||||||||||| |||||||||||||||||||     
T  9120058 attgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgca 9120157  T
Q  149 ttcgtcttggactaagactcttgtt 173  Q
    ||| |||||||  || |||||||||    
T  9120158 ttcctcttggaagaaaactcttgtt 9120182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 179410 - 179462
Alignment:
Q  106 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttgg 158  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  179410 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 29712146 - 29712083
Alignment:
Q  110 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgtt 173  Q
    |||||||||||||||||| ||| || ||||||| |||   || |||||||||||||||||||||    
T  29712146 tacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgtt 29712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 48884175 - 48884246
Alignment:
Q  105 gatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  48884175 gatgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 4031681 - 4031577
Alignment:
Q  55 attgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtc 154  Q
    |||| ||||||||||||||||||| |||| | ||| |     || ||||||||| || ||||||||||||||| ||||||||||||||| ||| ||||||    
T  4031681 attgtgatttgtgggtatttagaggatttgttagtct-----ccgtgggggatgttatagttgaaatatgggttatgaaagaatacaaaatgcattcgtc 4031587  T
Q  155 ttggactaag 164  Q
    ||||||||||    
T  4031586 ttggactaag 4031577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 12200703 - 12200760
Alignment:
Q  115 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 172  Q
    ||||||||||||  ||||||  ||||||| |||||||||||||||| |||||||||||    
T  12200703 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 12200760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 12445131 - 12445188
Alignment:
Q  115 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 172  Q
    ||||||||||||  ||||||  ||||||| |||||||||||||||| |||||||||||    
T  12445131 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 12445188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 15349244 - 15349305
Alignment:
Q  115 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    ||||||||||||| ||||||||||||||||||   || |||||||| |||| ||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 15349305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 4962221 - 4962161
Alignment:
Q  113 agttgaaatatgggtcatgaaagaatacaaagtgcgt---tcgtcttggactaagactctt 170  Q
    ||||||||||||||| ||||||||||||||| ||| |   ||||| |||||||||||||||    
T  4962221 agttgaaatatgggtgatgaaagaatacaaactgcattcgtcgtcgtggactaagactctt 4962161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 12195681 - 12195742
Alignment:
Q  111 acagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 172  Q
    ||||||||||||||||  |||||||||||||||   |  || ||||||||||||||||||||    
T  12195681 acagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 12440109 - 12440170
Alignment:
Q  111 acagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 172  Q
    ||||||||||||||||  |||||||||||||||   |  || ||||||||||||||||||||    
T  12440109 acagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 24367477 - 24367586
Alignment:
Q  66 tgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaaga 165  Q
    ||||||||||||| |||||| ||| ||||||   || ||   |||||| || | |||||||| ||| ||||||||||||||| ||||||||||||||| |    
T  24367477 tgggtatttagaggatttctcagtctatgggttttgaggagagatacactttatatatgggtaatggaagaatacaaagtgcattcgtcttggactaaaa 24367576  T
Q  166 ctcttgttct 175  Q
    ||||||||||    
T  24367577 ctcttgttct 24367586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 24340720 - 24340833
Alignment:
Q  66 tgggtatttagagaatttctaagtatatgggccatgggggatga---tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggacta 162  Q
    ||||||| ||||| |||||||||| ||||||  |||| ||||||   ||| ||||| || ||||| ||||||||||| |||||||  || ||||||||||    
T  24340720 tgggtatgtagaggatttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggacta 24340819  T
Q  163 agactcttgttctt 176  Q
    | ||||||||||||    
T  24340820 aaactcttgttctt 24340833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 24353085 - 24353198
Alignment:
Q  66 tgggtatttagagaatttctaagtatatgggccatgggggatga---tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggacta 162  Q
    ||||||| ||||| |||||||||| ||||||  |||| ||||||   ||| ||||| || ||||| ||||||||||| |||||||  || ||||||||||    
T  24353085 tgggtatgtagaggatttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggacta 24353184  T
Q  163 agactcttgttctt 176  Q
    | ||||||||||||    
T  24353185 aaactcttgttctt 24353198  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 24310525 - 24310635
Alignment:
Q  66 tgggtatttagagaatttctaagtatatgggccatgggg---gatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggacta 162  Q
    ||||||||||||| |||||| ||| ||||||  ||| ||   || |||| |||||| |||||||| |||||||||||||||||||  || ||||||| ||    
T  24310525 tgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcttcttggagta 24310624  T
Q  163 agactcttgtt 173  Q
    | |||||||||    
T  24310625 aaactcttgtt 24310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 24416132 - 24416199
Alignment:
Q  108 gatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttct 175  Q
    |||| |||||| |||||||| |||||||||||||||| ||  || ||||||||||| |||||||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 24323139 - 24323192
Alignment:
Q  123 tgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 176  Q
    ||||| |||||||||||||||||||  || |||| |||||| ||||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttctt 24323192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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