View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_low_13 (Length: 237)
Name: NF18778_low_13
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 16703508 - 16703630
Alignment:
| Q |
1 |
taatggatcacatgtactgatcatgtgacatgttcatgtaatcatagctaattagctagcttagccaagattcaccataaaaaggaactcaagtacaaaa |
100 |
Q |
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| T |
16703508 |
taatggatcacatgtactgatcatgtgacatgttcatgtaatcatagctaattagttagcttagccaagattcaccataaaaaggaactcaagtac-aaa |
16703606 |
T |
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| Q |
101 |
tatgtggcataatgggttttgaat |
124 |
Q |
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| T |
16703607 |
tatgtggcataatgggttttgaat |
16703630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 16703659 - 16703754
Alignment:
| Q |
124 |
ttaaatgatgattttccaattatcattcattgtactaatcatttaatatatttttaatccaataaaaaacttatgaaaagttcccattggtacaaa |
219 |
Q |
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| T |
16703659 |
ttaaatgatgattttccaagtatcattcattgtactaatcatttaatatatttttaatccaataaaaaacttatgaaaagttcccattggtacaaa |
16703754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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