View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_low_14 (Length: 210)
Name: NF18778_low_14
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30055107 - 30055290
Alignment:
| Q |
1 |
tggaatcatcgcgaagagacaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctt |
100 |
Q |
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| T |
30055107 |
tggaatcatcgcgaagagacaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctt |
30055206 |
T |
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| Q |
101 |
tgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat |
184 |
Q |
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| T |
30055207 |
tgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat |
30055290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 8400489 - 8400584
Alignment:
| Q |
89 |
tggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat |
184 |
Q |
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| T |
8400489 |
tggaagatgttttgtgagatggatccatcttgttgagagtacacaagtttgaaaaacttctttggttttcaagaaggagagaatgtgatggataat |
8400584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 5367737 - 5367622
Alignment:
| Q |
70 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
169 |
Q |
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| T |
5367737 |
tggaacttaatctaagggttggtagatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag |
5367638 |
T |
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| Q |
170 |
aatgtcatggataatc |
185 |
Q |
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| T |
5367637 |
aatgtgatggagaatc |
5367622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 5362521 - 5362411
Alignment:
| Q |
70 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
169 |
Q |
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||||| |||||||||| ||||||| ||| |||| |||| ||||||| | | ||||||||||||||||||||||||||||| |||| ||| || ||||| |
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| T |
5362521 |
tggaacttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatgcaagtttgaaaagcttctttggtgtccaataaggagag |
5362422 |
T |
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| Q |
170 |
aatgtcatgga |
180 |
Q |
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| T |
5362421 |
aatgtgatgga |
5362411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 5374285 - 5374181
Alignment:
| Q |
76 |
ttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtc |
175 |
Q |
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|||||||||||||||||| ||| |||| ||||| |||||||| || ||||||||| ||||||||||||||| ||| |||| || || |||||||||| |
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| T |
5374285 |
ttaatctaagggttggaatatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtg |
5374186 |
T |
|
| Q |
176 |
atgga |
180 |
Q |
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||||| |
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| T |
5374185 |
atgga |
5374181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 5356089 - 5355979
Alignment:
| Q |
70 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
169 |
Q |
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| T |
5356089 |
tggaacttaatctaagggttgagagatgttttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag |
5355990 |
T |
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| Q |
170 |
aatgtcatgga |
180 |
Q |
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| T |
5355989 |
aatgtgatgga |
5355979 |
T |
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