View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_low_15 (Length: 206)
Name: NF18778_low_15
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 35527369 - 35527542
Alignment:
| Q |
18 |
ggttgatagcatagacatctactcaggtgaaacctactcagtactcctgcatacagaccaagacccaagccaaaactactggctctcagtcagcattata |
117 |
Q |
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| T |
35527369 |
ggttgatagcatagacatctactcaggtgaaacctactcagtactcttacatacagaccaagacccaagccaaaactactggctctcagtcggcattata |
35527468 |
T |
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| Q |
118 |
agcagaaaatcagacacaccacaagccctaacaatccttaactataatacaaaccctgcttcaactttccctat |
191 |
Q |
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| T |
35527469 |
agcagaaaatcagacacaccacaagccctaacaatccttaactataatacaaatcctgcttcaactttccctat |
35527542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 35509185 - 35509315
Alignment:
| Q |
31 |
gacatctactcaggtgaaacctactcagtactcctgcatacagaccaagacccaagccaaaactactggctctcagtcagcattataagcagaaaatcag |
130 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||| ||| || | ||| | | |||||| || |
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| T |
35509185 |
gacatctactcaggtgaaacctactcagtcctccttacaacagaccaagaccctaaaaaaaactactggctttcaatcggagttagaggtagaaaaccaa |
35509284 |
T |
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| Q |
131 |
acacaccacaagccctaacaatccttaacta |
161 |
Q |
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| T |
35509285 |
gcacaccacaagccctaacaatccttaacta |
35509315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 35541807 - 35541941
Alignment:
| Q |
27 |
catagacatctactcaggtgaaacctactcagtactcctgcatacagaccaagacccaagccaaaactactggctctcagtcagcattataagcagaaaa |
126 |
Q |
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||||||||| ||||||||||||||||||||||||||| | | ||| ||||| |||| | ||||||||||| | || || | ||| | | |||||| |
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| T |
35541807 |
catagacatatactcaggtgaaacctactcagtactcattaaaacaaaccaaaaccccacaaaaaactactggattgcaatcggtgttagaggtagaaaa |
35541906 |
T |
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| Q |
127 |
tcagacacaccacaagccctaacaatccttaacta |
161 |
Q |
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| T |
35541907 |
cctaacacaccacaagccctaacaatccttaacta |
35541941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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