View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_low_2 (Length: 544)
Name: NF18778_low_2
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 148 - 525
Target Start/End: Complemental strand, 29931492 - 29931114
Alignment:
| Q |
148 |
cgtctctataaatatatcatcttagtctnnnnnnnggatgaaaaacatttttaagtcattataatttgtttaaaacactcttgattttaatttctttcct |
247 |
Q |
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| T |
29931492 |
cgtctctataaatatattatcttagtctaaaaaaaggatgaaaaacttttttaagtcattataatttgtttaaaacactcttgattttaatttctttcct |
29931393 |
T |
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| Q |
248 |
cttcatttgctctgaatgttgtgttcatctttttgtaggatattcaccatcaaggaaaagaactgaaagaggctccagctcctattggttatcattgagt |
347 |
Q |
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| T |
29931392 |
cttcatttgctctgaatgttgtgttcatctttttgtaggatattcaccatcaaggaaaagaactgaaagaggctccagctcctattggttatcattgagt |
29931293 |
T |
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| Q |
348 |
catgtttttatcga-nnnnnnnatcaaatagtgatttctattttctagctagcctttgttgtctaaactttcaattcgtgtcggaattcttcaataaata |
446 |
Q |
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| T |
29931292 |
catgtttttatcgattttttttatcaaatagtgatttctattttctagctagcctttgttgtctaaactttcaattcgtgtcggaattcttcaataaata |
29931193 |
T |
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| Q |
447 |
aaatgtactttcaatctgcattttgtatcctgaaagtttaccagtactcattacacaatatctcatcaaatcaatgagt |
525 |
Q |
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| T |
29931192 |
aaatgtactttcaatctgcattttatatcctgaaagtttaccagtactcattacacaatatctcatcaaatcaatgagt |
29931114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 258 - 486
Target Start/End: Complemental strand, 29933961 - 29933729
Alignment:
| Q |
258 |
tctgaatgttgtgttcatctttttgtaggatattcaccatcaaggaaaagaactgaaagaggctccagctcctattggttatcattgagtca-tgttttt |
356 |
Q |
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| T |
29933961 |
tctgaatgttgtgttcttctttttgtaggatattcaccatcaaggaaaagaattgaaagaggctccagctcctgttggttatcattgagtcactgttttt |
29933862 |
T |
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| Q |
357 |
atc--gannnnnnnatcaa---atagtgatttctattttctagctagcctttgttg--tctaaactttcaattcgtgtcggaattcttcaataaataaaa |
449 |
Q |
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|| | ||||| ||||| |||||| |||| ||||||||| ||| ||||||||||||||| ||| ||||| |||||||||||||| |
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| T |
29933861 |
gtcaaaaaaaaattatcaaaatatagtaatttctttttt----ctagccttttttgtctctaaactttcaatttgtgcttgaattgttcaataaataaaa |
29933766 |
T |
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| Q |
450 |
tgtactttcaatctgcattttgtatcctgaaagttta |
486 |
Q |
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| T |
29933765 |
tgtattttcagtgtgcattttgtaacctgaaagttta |
29933729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 29931623 - 29931543
Alignment:
| Q |
17 |
aaggatgttatcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttcagtgagtgtcaatcgt |
97 |
Q |
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| T |
29931623 |
aaggatgttatcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttcggtgagtgtcaatcgt |
29931543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 29934347 - 29934283
Alignment:
| Q |
17 |
aaggatgttatcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttc |
81 |
Q |
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| T |
29934347 |
aaggatgttgtcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttc |
29934283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 37469786 - 37469856
Alignment:
| Q |
20 |
gatgttatcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttcagtgagtgt |
90 |
Q |
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| T |
37469786 |
gatgttataacagtcattcgtgctgacgaggctcaccatcgggatgtgaaccatttcgcttcagtgagtgt |
37469856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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