View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_low_5 (Length: 458)
Name: NF18778_low_5
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 77 - 454
Target Start/End: Original strand, 4698276 - 4698654
Alignment:
| Q |
77 |
ccaacattgaaatgagtccactgatttgatgtaggctaagatatttctagtatttgtcggtnnnnnnnctaataatttacagtaatatctacatttaact |
176 |
Q |
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| T |
4698276 |
ccaacattgaaatgactcaactgatttgagttaggctaagaacttattagcatttgtcattaaaaaaactaataatttacagtaatatctacatttaact |
4698375 |
T |
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| Q |
177 |
tgccaattacgaattctcaactaaaactcaagttaaagctagtgtgaccaaaataagttttaactcaacataaaacactcacattaatttaaacaccctt |
276 |
Q |
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| T |
4698376 |
tgccaattacgaattctcaactaaaactcaagttaaagctagtgtgaccaaaataagttttaactcaacataaaacactcacattaatttaaacaccctt |
4698475 |
T |
|
| Q |
277 |
cataagtaagtttgaatc-nnnnnnnnnaacaagataaataaatttgaatcttatcttaaaagttaactcaaacacttttatacatctaacaatttgggg |
375 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4698476 |
cataagtaagtttgaatcttttttttttaacaagataaataaatttgaatcttatcttaaaagttaactcaaacacttttatacatctaacaatttgagg |
4698575 |
T |
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| Q |
376 |
atttgaataatgtgagactccaaataactttaatattaaccacactagcacataaatacatcttccatattcttcgaca |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |
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| T |
4698576 |
atttgaataatgtgagactccaaataactttaatattaaccactctagcacataaatacatcttccatatgcatcgaca |
4698654 |
T |
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