View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_low_6 (Length: 324)
Name: NF18778_low_6
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_low_6 |
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| [»] chr4 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 25290601 - 25290336
Alignment:
| Q |
1 |
aaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaacca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
25290601 |
aaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaatccccttcttaatttcttagaaatagcctcatttaacca |
25290502 |
T |
|
| Q |
101 |
acattcaaaatgtacaaagagattatggggtattatgaagtgaaattctaaccaacacatc-atcctttgccaaatcctcataaccacat--cagtgtaa |
197 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |
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| T |
25290501 |
acattcaaaatgtacatagagattatggggtattatgaagtgaaattctaaccaacacatcaatcctttgccaaatcctcataaccacatcacaatgtaa |
25290402 |
T |
|
| Q |
198 |
gaaaagatgtgacgtcgtttcttcctccctcccacaaagcatgcaactcttggaagcctcctcatt |
263 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| |
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| T |
25290401 |
gaaaagatgtgacgtcgtttcttcctcccacccacaaaacatgcaactcttggaagcttcctcatt |
25290336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 19251123 - 19251230
Alignment:
| Q |
20 |
cttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaatgtacaaag |
119 |
Q |
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||||||||| | |||||||| ||| |||||||||| |||| |||||||| | ||| |||||||||||||| || ||||||||||||||| | ||||| |
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| T |
19251123 |
cttccaaatagcccaaatagaatcaacccaaatcaaataaaaaccccttctaattttattagaagtagcctccttaaaccaacattcaaaacgaacaaaa |
19251222 |
T |
|
| Q |
120 |
agattatg |
127 |
Q |
| |
|
|||||||| |
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| T |
19251223 |
agattatg |
19251230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 5199194 - 5199154
Alignment:
| Q |
284 |
ttttgtgaacacaggaaagtggtaaagccacttttgttgaa |
324 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5199194 |
ttttgtgaacataggaaagtggtaaagccacttttgttgaa |
5199154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 4282226 - 4282118
Alignment:
| Q |
3 |
ataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaac |
102 |
Q |
| |
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|||| |||||| ||| ||||||||| || |||||||| |||||||||||||| ||||| |||| ||||| |||| |||| | |||||||| |||||| |
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| T |
4282226 |
ataacctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaagcaaaatccccgtcttattttcctagatgaagcctcataataccaac |
4282127 |
T |
|
| Q |
103 |
attcaaaat |
111 |
Q |
| |
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||||||||| |
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| T |
4282126 |
attcaaaat |
4282118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 30950737 - 30950699
Alignment:
| Q |
286 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaa |
324 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30950737 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaa |
30950699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 48697669 - 48697631
Alignment:
| Q |
286 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
48697669 |
ttgtgaacacaggaaagtggtaaagccacttttgttgaa |
48697631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 30946030 - 30945993
Alignment:
| Q |
287 |
tgtgaacacaggaaagtggtaaagccacttttgttgaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
30946030 |
tgtgaacacaggaaagtggtaaagccacttttgttgaa |
30945993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 48702357 - 48702320
Alignment:
| Q |
287 |
tgtgaacacaggaaagtggtaaagccacttttgttgaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
48702357 |
tgtgaacacaggaaagtggtaaagccacttttgttgaa |
48702320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 29585826 - 29585789
Alignment:
| Q |
287 |
tgtgaacacaggaaagtggtaaagccacttttgttgaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
29585826 |
tgtgaacacaggaaagtggtaaagccacttttgttgaa |
29585789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 27879263 - 27879226
Alignment:
| Q |
287 |
tgtgaacacaggaaagtggtaaagccacttttgttgaa |
324 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
27879263 |
tgtggacacaggaaagtggtaaagccacttttgttgaa |
27879226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 9443684 - 9443821
Alignment:
| Q |
8 |
ctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaacattca |
107 |
Q |
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||||||| ||| ||||||||| || |||||||| |||||||||| || |||| ||| ||| | |||| ||||| |||||||| |||| |||||| |
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| T |
9443684 |
ctcattctttttcttccaaataacccaaatagaatcaagccaaattaagaaaaatacccgtctcattttcaaagaaggagcctcataataccaccattca |
9443783 |
T |
|
| Q |
108 |
aaatgtacaaagagattatggggtattatgaagtgaaa |
145 |
Q |
| |
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|||||| ||| |||||||| ||||||| ||| ||||| |
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| T |
9443784 |
aaatgtgaaaaaagattatgtggtattacgaaatgaaa |
9443821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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