View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_low_8 (Length: 300)
Name: NF18778_low_8
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 34062987 - 34062703
Alignment:
| Q |
1 |
tattgagccaacattttgtctctttactagtggcgtgcatctacactcacatcttaaatagacctaaatttgtccttcaacaaggaaataaatcattcat |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34062987 |
tattgagccaacattttgtctctttactggtggcgtgcatctacagtcacatcttaaatagacctaaatttgtccttcaacaaggaaataaatcattcat |
34062888 |
T |
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| Q |
101 |
caacgtacagctcactaatttctttnnnnnnntattgatgactaactaattaaggtgacaacctcactaatgtaatatgattgaggaatcaaagtatata |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34062887 |
caacgtacagctcactaatttctttaaaaaaatattgatgactaactaattaaggtgacaacctcactaatgtaatatgattgaggaatcaaagtatata |
34062788 |
T |
|
| Q |
201 |
tgagtcaaatctatgataagatgaaatagaatta--ttttttcccccaaaaggtctttgattaataaggctggctatattgttct |
283 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34062787 |
tgagtcaaatctatgataagatgaaataggattattttttttcccccaaaaggtctttgattaataaggctggctatattgttct |
34062703 |
T |
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