View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18778_low_9 (Length: 251)
Name: NF18778_low_9
Description: NF18778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18778_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 39184969 - 39185182
Alignment:
| Q |
13 |
gcggaactgacccaatcgaagccgatctcagcaacaaaatcaccaaaaccagtaccaaacctgaaagcatgtgagacacccagagnnnnnnngtcgatat |
112 |
Q |
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| T |
39184969 |
gcggaactgaccgaatggaagctgatctcagcaacaaaatcaccaaaaccagtaccgaacgtgaaagcacgtgagacacccagagaaaaaa-gtcgatat |
39185067 |
T |
|
| Q |
113 |
atacccaaaaccgccaaaa---aaccaagcaaccagcaccactacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaacagtaacacaa |
209 |
Q |
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||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39185068 |
atacctaaaaccacaaaaaaaaaaccaagcaaccagcaccactacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaacagtaacacaa |
39185167 |
T |
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| Q |
210 |
aaacttaaacaaccc |
224 |
Q |
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||||||||||||||| |
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| T |
39185168 |
aaacttaaacaaccc |
39185182 |
T |
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