View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1877_high_13 (Length: 241)
Name: NF1877_high_13
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 21830052 - 21830291
Alignment:
| Q |
1 |
agacaatgtagattgtgtgacactgtaaatgttgaataattctaaagacagacagaatcaagttacccttttcacaagat---ataaattcaaagttgaa |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
21830052 |
agacaatgtagattgtgtgacactgtaaatgttgaataattctaaagacagacagaatcaagttacccttttcacaagatataataaattc-aagttgaa |
21830150 |
T |
|
| Q |
98 |
ggaccaataaatacttcctcaagacctg-aaacattataaaagggcaaggcaaacaccacaacttctcacccaaaagctacacatt---ttcttctaaat |
193 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
21830151 |
ggaccaataaatacttcctcaagacctgaaaacattataaaagggcaaggcaaacaccacaacttctcacccaaaagctacacattttcttcttctaagt |
21830250 |
T |
|
| Q |
194 |
tatttacacaaatccaaaataacaaacatgagtccctttaa |
234 |
Q |
| |
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||| || | ||| |||||||||||||||||||||||||||| |
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| T |
21830251 |
tatatataaaaacccaaaataacaaacatgagtccctttaa |
21830291 |
T |
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