View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1877_high_18 (Length: 215)

Name: NF1877_high_18
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1877_high_18
NF1877_high_18
[»] chr5 (1 HSPs)
chr5 (138-186)||(35159575-35159623)
[»] chr8 (2 HSPs)
chr8 (138-186)||(37198202-37198250)
chr8 (138-186)||(37198386-37198434)
[»] chr4 (2 HSPs)
chr4 (138-186)||(23952688-23952733)
chr4 (154-186)||(24046051-24046083)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 35159575 - 35159623
Alignment:
Q  138 agaaaatattttctacacttatccttatctttatttattaattttgtta 186  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35159575 agaaaatattttctacacttatccttatccttatttattaattttgtta 35159623  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 37198250 - 37198202
Alignment:
Q  138 agaaaatattttctacacttatccttatctttatttattaattttgtta 186  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  37198250 agaaaatattttctacacttatccttatcgttattttttaattttgtta 37198202  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 37198434 - 37198386
Alignment:
Q  138 agaaaatattttctacacttatccttatctttatttattaattttgtta 186  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  37198434 agaaaatattttctacacttatctttatccttatttattaattttgtta 37198386  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 23952733 - 23952688
Alignment:
Q  138 agaaaatattttctacacttatccttatctttatttattaattttgtta 186  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||    
T  23952733 agaaaatattttctacacttatcctta---ttatttattaattttgtta 23952688  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 24046051 - 24046083
Alignment:
Q  154 acttatccttatctttatttattaattttgtta 186  Q
    ||||||||||||| |||||||||||||||||||    
T  24046051 acttatccttatccttatttattaattttgtta 24046083  T

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