View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1877_high_3 (Length: 459)
Name: NF1877_high_3
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 34640764 - 34640336
Alignment:
| Q |
17 |
cacaccgtgattttttaaaggtacattttgtaggttcttcaaaatcacggcgaatcatcgtgattctgacatattcattgtgatatcaaacatacactaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34640764 |
cacaccgtgattttttaaaggtacattttgtaggttcttcaaaatcacggcgaatcatcgtgattctgacatattcgttgtgatatcaaacatacactaa |
34640665 |
T |
|
| Q |
117 |
attgcggttcacaaccacaaccactcgagnnnnnnnactttcttaatgaccgatattaataatagttagttgttattgatgctacatcagccacatttgc |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
34640664 |
attgcggttcacaaccacaaccactcgagtttttttactttcttaatgaccgatattaata---gttaattgttattgatgctacatcagccacatttgc |
34640568 |
T |
|
| Q |
217 |
ctgcaatattaaggatggcaatgcatatgcaacttaaaaccatgcatgtcactgttctcaaacacccactatgacccagcttcaaattttaatttaacac |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34640567 |
ctgcaatattaaggatggcaatgcatatgcatcttaaaaccatgcatgtcactgttctcaaacacccactatgacccagcttcaaattttaatttaacac |
34640468 |
T |
|
| Q |
317 |
caacaaaactagcttatgaaataaataatatactgatgggtttattaatcttgattaagaatatatttatgctttcatgttaaattattgattttatata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34640467 |
caacaaaactagcttatgaaataaataatatactgatgggtttattaatcttgattaagaatatatttatgctttcatgttaaattattgattttatata |
34640368 |
T |
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| Q |
417 |
tgatgtctcaaccttctttgtctcatagaatt |
448 |
Q |
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| T |
34640367 |
tgatgtctcaactatctttgtctcatagaatt |
34640336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 45266564 - 45266491
Alignment:
| Q |
38 |
tacattttgtaggttcttcaaaatcacggcgaatcatcgtgattctgacatattcattgtgatatcaaacatac |
111 |
Q |
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||||||||| || |||| |||||| |||||| |||| ||| ||||| ||||| ||||||||||| ||||||||| |
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| T |
45266564 |
tacattttgcagcttctacaaaattacggcggatcaacgtaattctaacatactcattgtgataccaaacatac |
45266491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 34197857 - 34197912
Alignment:
| Q |
57 |
aaaatcacggcgaatcatcgtgattctgacatattcattgtgatatcaaacataca |
112 |
Q |
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| T |
34197857 |
aaaatcacggtgatccatcgtgattctgacatatccaccgtgatatcaaacataca |
34197912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 5277015 - 5276939
Alignment:
| Q |
38 |
tacattttgtaggttcttcaaaatcacggcgaatcatcgtgattctgacatattcattgtgatatcaaacatacact |
114 |
Q |
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|||| ||||||| |||| |||||||| | | |||| |||||||||||||||| || ||||||| |||||| ||||| |
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| T |
5277015 |
tacactttgtagtttctacaaaatcatgatggatcaccgtgattctgacatatccactgtgataccaaacaaacact |
5276939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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