View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1877_low_1 (Length: 803)
Name: NF1877_low_1
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 40114794 - 40114373
Alignment:
| Q |
14 |
catcatgccaacctaccatctcaattttggtcgtttgcatttagtacagcagcatatctaatcaacaggttgcccacaccaacactcaatatgaaaacac |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114794 |
catcatgccaacctaccatctcaattttggtcgcttgcatttagtacagcagcatatctaatcaacaggttgcccacaccaacactcaatatgaaaacac |
40114695 |
T |
|
| Q |
114 |
cctatcatacccttcataaccaaacatataatatcacccacctacactcttttggttgcttatgttttccatggttacgaccttacaatagcaacaaact |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114694 |
cctatcatacccttcataaccaaacatataatatcacccacctacactcttttggttgcttatgttttccatggttacgaccttacaatagcaacaaact |
40114595 |
T |
|
| Q |
214 |
ccaacctaaatctcaaccgtgtatctttgtcggttactcaccatctcaatatgcctatcgctgcctggatcccataacaaacaaaatatacacatcccgt |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114594 |
ccaacctaaatctcaaccgtgtatctttgttggttactcaccatctcaatatgcctatcgctgcctggatcccataacaaacaaaatatacacatcccgt |
40114495 |
T |
|
| Q |
314 |
catgtggtcttctatgacaaccattttccctacccatccttaatacaaccgacacctatctacaaaccaataccaagcatcaacccacatccaccacaca |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114494 |
catgtggtcttctatgacaaccattttccctacccatccttaatacaactgacacctatctacaaaccaataccaagcatcaacccacatccaccacaca |
40114395 |
T |
|
| Q |
414 |
tcatcctacctcttaacccacc |
435 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
40114394 |
tcatcctacctcttaaaccacc |
40114373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 473 - 783
Target Start/End: Complemental strand, 40114377 - 40114067
Alignment:
| Q |
473 |
ccaccacttacaactaatacttcacaaactgcgaccaccactacctctacatctgttgcaaatcctcaagaggcaaccttgcactcaagttcttcatcag |
572 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114377 |
ccaccacttacaactaatacttcacaaactgtgaccaccactacctctacatctgttgcaaatcctcaagaggcaaccttgcactcaagttcttcatcag |
40114278 |
T |
|
| Q |
573 |
gtaataatctgcccactacatcttctactttaaacctacctatgattctacctaaccccattgcaggtgctaatgatcgcaatcatgtggttactagatc |
672 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40114277 |
gtaataatctgcccactacatcttctacttcaaacctacctatgattctacctaaccccattgcaggtgctaatgatcgcaatcatgtggtcactagatc |
40114178 |
T |
|
| Q |
673 |
ccaaaacaacatattcaaaccaaagaaactttaccatgcatctgttcatccattacctgagaaccttgaaccatctaatatccgacaagccatgaaatat |
772 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40114177 |
ccaaaacaacatattcaaaacaaagaaactttaccatgcatctgttcatccattacctgagaaccttgaaccatctaatatccgacaagccataaaatat |
40114078 |
T |
|
| Q |
773 |
tcccattggag |
783 |
Q |
| |
|
||||||||||| |
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| T |
40114077 |
tcccattggag |
40114067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 342
Target Start/End: Original strand, 3017982 - 3018172
Alignment:
| Q |
152 |
cacctacactcttttggttgcttatgttttccatggttacgaccttacaatagcaacaaactccaacctaaatctcaaccgtgtatctttgtcggttact |
251 |
Q |
| |
|
||||||||||| ||||| ||| | ||||| |||||| || |||||||| | | | ||||||||||| |||||| | | ||||| || | ||||||| |
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| T |
3017982 |
cacctacactcctttggatgcctttgtttcccatggctaaaaccttacacaaaccataaactccaacccaaatctatatcatgtatattcattggttact |
3018081 |
T |
|
| Q |
252 |
caccatctcaatatgcctatcgctgcctggatcccataacaaacaaaatatacacatcccgtcatgtggtcttctatgacaaccattttcc |
342 |
Q |
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|||| || |||||||| ||||| || || ||||||| ||| |||||||| || || || |||||||| || ||| |||||||||||||||| |
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| T |
3018082 |
caccctcacaatatgcatatcgttgtctagatcccaaaaccaacaaaatttatacttcacgtcatgttgtattccatgacaaccattttcc |
3018172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 644 - 696
Target Start/End: Complemental strand, 655327 - 655275
Alignment:
| Q |
644 |
aatgatcgcaatcatgtggttactagatcccaaaacaacatattcaaaccaaa |
696 |
Q |
| |
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||||||||| ||||||| ||||||||||| ||||||||||| || |||||||| |
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| T |
655327 |
aatgatcgctatcatgttgttactagatctcaaaacaacatctttaaaccaaa |
655275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 655711 - 655584
Alignment:
| Q |
237 |
tctttgtcggttactcaccatctcaatatgcctatcgctgcctggatcccataacaaacaaaatatacacatcccgtcatgtggtcttctatgacaacca |
336 |
Q |
| |
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||||||| || |||||||| ||||||||||| ||||| ||| | ||||| | ||| || |||| |||||||| || ||||| |||||| |||| ||||| |
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| T |
655711 |
tctttgtaggctactcaccctctcaatatgcttatcgttgcttagatcctacaaccaa-taaatctacacatctcgccatgttgtcttccatgataacca |
655613 |
T |
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| Q |
337 |
ttttccctacccatccttaatacaaccga |
365 |
Q |
| |
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||||| || ||||||| |||||||||| |
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| T |
655612 |
ctttccatatacatccttgatacaaccga |
655584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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