View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1877_low_10 (Length: 334)
Name: NF1877_low_10
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 86 - 326
Target Start/End: Complemental strand, 44783369 - 44783131
Alignment:
| Q |
86 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44783369 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
44783270 |
T |
|
| Q |
186 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaacctatgttgaactgacaattgatgtttactttgttttt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44783269 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaa-ctatgttgaactgacaattgatgtttactttgttttt |
44783171 |
T |
|
| Q |
286 |
gggannnnnnnnncctttgtttgacatttcctccctatgct |
326 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
44783170 |
ggga-ttttttttcctttgtttgacatttcctccctatgct |
44783131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 44783735 - 44783685
Alignment:
| Q |
27 |
tcatgaaatgaatcgtaaaactgaaaagaaagcaattaaaaaatttaccaa |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44783735 |
tcatgaaatgaatcgtaaaactgaaaagaaagcaattaaaatttttaccaa |
44783685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University