View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1877_low_11 (Length: 316)
Name: NF1877_low_11
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 47575167 - 47574877
Alignment:
| Q |
12 |
agagacactacaattgttctcacatcgctttcaatcataaattgttctgagaaaagagtggnnnnnnnnn-tccaaagagtgaagtgagatggcttacta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47575167 |
agagacactacaattgttctcacatcgctttcaatcataaattgttctgagaaaagagtggaaaaaaaaaatccaaagagtgaagtgagatggcttacta |
47575068 |
T |
|
| Q |
111 |
caatcaaaacactcctcctgctattaacgttaacgtttctggtccacctcctccaccacaaggttctctcaaacaaatccatctaattaccttgattatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47575067 |
caatcaaaacactcctcctgctattaacgttaacgtttctggtccacctcctccaccacaaggttctctcaaacaaatccatctaattaccttgattatt |
47574968 |
T |
|
| Q |
211 |
tttgtttattcattacttatatgcattttttggacgattgattaatgacatgtattgttacatacttttaacagtaaatattatgattttgt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47574967 |
tttgtttattcattacttatatgcattttttggacgattga-taatgacatgtattgttacatacttttaacagtaaatattatgattttgt |
47574877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 47570045 - 47569943
Alignment:
| Q |
97 |
gagatggcttactacaatcaaaacactcctcctgctattaacgttaacgtttctggtccacctcctccaccacaaggttctctcaaacaaatccatctaa |
196 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
47570045 |
gagatggcttactacaatcaaaa---tcctcctgcggttaacgttaacgtttctggtccaccacct---gcacaaggt--gctcaaacaaatccatctaa |
47569954 |
T |
|
| Q |
197 |
ttaccttgatt |
207 |
Q |
| |
|
||||| ||||| |
|
|
| T |
47569953 |
ttaccatgatt |
47569943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University