View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1877_low_19 (Length: 237)
Name: NF1877_low_19
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 21829500 - 21829717
Alignment:
| Q |
17 |
agaactgataaacatgattaaacactccttattttttcattggaaaaaacacaattataagcataagtttaccaatagatttgacttatttcatttgatt |
116 |
Q |
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| T |
21829500 |
agaacagataaacatgattaaacactccttattttttcattggaaaaaacacaattataagcataagtttaccaatagatttgactcatttcatttgatt |
21829599 |
T |
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| Q |
117 |
gcacaatcggttaagacaagagttggatctagtagaatatgttagacttccgcaacaacatgacgatctaaattagtttaaatcttaatt-aaagatgtg |
215 |
Q |
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| T |
21829600 |
gcacaatcggttaagac-agagttggatctagtagaatatgttagacttccgcaacaacataacgatctaa---agtttaaatcttaattaaaagatgtt |
21829695 |
T |
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| Q |
216 |
cccataattattgaccaacgta |
237 |
Q |
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| T |
21829696 |
tccataattagtgaccaacgta |
21829717 |
T |
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