View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1877_low_2 (Length: 554)

Name: NF1877_low_2
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1877_low_2
NF1877_low_2
[»] chr5 (43 HSPs)
chr5 (50-492)||(35159122-35159558)
chr5 (351-539)||(16528600-16528788)
chr5 (346-449)||(7673224-7673330)
chr5 (346-444)||(41092901-41093000)
chr5 (351-449)||(9488075-9488175)
chr5 (346-449)||(11313974-11314080)
chr5 (346-443)||(35159699-35159797)
chr5 (346-449)||(16529130-16529235)
chr5 (346-492)||(43394919-43395063)
chr5 (351-449)||(7127559-7127659)
chr5 (351-492)||(26523125-26523265)
chr5 (356-539)||(11313807-11313990)
chr5 (345-449)||(11313634-11313740)
chr5 (350-449)||(12442158-12442259)
chr5 (346-492)||(24351437-24351582)
chr5 (346-447)||(16526192-16526296)
chr5 (351-449)||(19122243-19122343)
chr5 (346-449)||(23138027-23138131)
chr5 (346-444)||(41093080-41093180)
chr5 (460-539)||(35159636-35159715)
chr5 (346-443)||(16528954-16529051)
chr5 (346-442)||(26523268-26523366)
chr5 (349-492)||(31486801-31486943)
chr5 (351-449)||(19121907-19122007)
chr5 (351-449)||(16305348-16305446)
chr5 (379-492)||(24350884-24350995)
chr5 (373-433)||(24326548-24326609)
chr5 (373-433)||(24350732-24350793)
chr5 (373-433)||(24351286-24351347)
chr5 (351-447)||(14166190-14166289)
chr5 (363-449)||(16528793-16528881)
chr5 (346-491)||(31487051-31487194)
chr5 (379-539)||(43395047-43395207)
chr5 (502-539)||(26523350-26523387)
chr5 (351-443)||(10409525-10409619)
chr5 (503-539)||(7673134-7673170)
chr5 (503-539)||(16528934-16528970)
chr5 (503-539)||(16529110-16529146)
chr5 (346-395)||(7673100-7673150)
chr5 (502-539)||(41092984-41093021)
chr5 (460-492)||(16528529-16528561)
chr5 (351-394)||(38268880-38268924)
chr5 (460-492)||(41093034-41093066)
[»] chr7 (56 HSPs)
chr7 (351-492)||(4680862-4681001)
chr7 (345-449)||(11650013-11650119)
chr7 (344-490)||(23591381-23591526)
chr7 (351-492)||(12140826-12140966)
chr7 (351-492)||(2526918-2527059)
chr7 (346-449)||(9141966-9142071)
chr7 (346-492)||(22773877-22774020)
chr7 (351-449)||(18486634-18486734)
chr7 (345-449)||(19222099-19222206)
chr7 (351-492)||(35124725-35124865)
chr7 (346-443)||(11645942-11646041)
chr7 (346-447)||(11646404-11646507)
chr7 (344-492)||(48640765-48640913)
chr7 (350-492)||(16671604-16671745)
chr7 (350-492)||(17645972-17646113)
chr7 (351-449)||(23591636-23591736)
chr7 (351-492)||(45419601-45419741)
chr7 (352-491)||(45419808-45419947)
chr7 (351-449)||(16492550-16492649)
chr7 (346-449)||(30991454-30991560)
chr7 (351-439)||(9142148-9142238)
chr7 (351-449)||(34837187-34837288)
chr7 (351-449)||(46264288-46264389)
chr7 (351-449)||(4681603-4681699)
chr7 (346-449)||(27716314-27716419)
chr7 (346-449)||(27716536-27716641)
chr7 (354-488)||(2853186-2853320)
chr7 (346-427)||(11646622-11646705)
chr7 (344-449)||(16671239-16671346)
chr7 (344-449)||(17645607-17645714)
chr7 (379-449)||(18487180-18487251)
chr7 (344-449)||(21224131-21224238)
chr7 (351-449)||(48641447-48641546)
chr7 (372-449)||(4681150-4681228)
chr7 (379-449)||(40686897-40686967)
chr7 (346-492)||(22324279-22324424)
chr7 (346-449)||(48641021-48641126)
chr7 (351-449)||(2354670-2354770)
chr7 (382-449)||(43059223-43059291)
chr7 (351-432)||(32278158-32278241)
chr7 (351-449)||(34837442-34837541)
chr7 (353-445)||(11646218-11646312)
chr7 (351-443)||(40450112-40450206)
chr7 (373-449)||(1566513-1566591)
chr7 (351-445)||(21128040-21128136)
chr7 (344-397)||(34837381-34837435)
chr7 (346-449)||(4454919-4455024)
chr7 (460-492)||(16671569-16671601)
chr7 (460-492)||(17645937-17645969)
chr7 (463-492)||(1566283-1566312)
chr7 (463-492)||(9141699-9141728)
chr7 (463-492)||(21128383-21128412)
chr7 (460-492)||(6249925-6249957)
chr7 (460-492)||(16671927-16671959)
chr7 (460-492)||(17646295-17646327)
chr7 (460-492)||(27712517-27712549)
[»] chr3 (34 HSPs)
chr3 (341-490)||(46451460-46451608)
chr3 (351-449)||(36643133-36643233)
chr3 (346-449)||(837209-837314)
chr3 (351-492)||(47503019-47503159)
chr3 (344-443)||(38887377-38887478)
chr3 (351-449)||(18094956-18095056)
chr3 (347-492)||(53047554-53047697)
chr3 (351-539)||(11454205-11454392)
chr3 (355-448)||(37760501-37760596)
chr3 (353-525)||(43017273-43017445)
chr3 (351-449)||(11453937-11454038)
chr3 (346-449)||(11454557-11454663)
chr3 (348-492)||(35560098-35560242)
chr3 (344-445)||(38887588-38887693)
chr3 (346-491)||(47503193-47503338)
chr3 (345-449)||(11522526-11522632)
chr3 (351-447)||(18094741-18094839)
chr3 (346-449)||(24365736-24365834)
chr3 (346-449)||(45514425-45514529)
chr3 (351-492)||(20877182-20877322)
chr3 (346-444)||(40050845-40050945)
chr3 (351-444)||(38887806-38887901)
chr3 (346-441)||(11454376-11454475)
chr3 (378-449)||(16015256-16015328)
chr3 (379-449)||(47519955-47520026)
chr3 (380-443)||(51654074-51654138)
chr3 (404-490)||(46451338-46451422)
chr3 (403-441)||(54274786-54274824)
chr3 (502-539)||(11454536-11454573)
chr3 (502-539)||(46451226-46451263)
chr3 (355-434)||(47519875-47519956)
chr3 (346-397)||(46451247-46451299)
chr3 (351-449)||(46451078-46451175)
chr3 (503-539)||(46451445-46451481)
[»] chr2 (37 HSPs)
chr2 (346-449)||(41995759-41995864)
chr2 (344-492)||(28612199-28612346)
chr2 (344-449)||(28611814-28611921)
chr2 (344-492)||(28612412-28612558)
chr2 (344-449)||(28612663-28612768)
chr2 (345-492)||(44256467-44256613)
chr2 (346-449)||(11735905-11736009)
chr2 (353-545)||(29549960-29550150)
chr2 (379-539)||(5001616-5001776)
chr2 (346-492)||(6348067-6348212)
chr2 (351-434)||(28612042-28612127)
chr2 (351-449)||(28612874-28612975)
chr2 (351-449)||(10129503-10129603)
chr2 (351-449)||(44543721-44543821)
chr2 (346-539)||(5001439-5001632)
chr2 (346-440)||(627532-627628)
chr2 (346-449)||(29550128-29550237)
chr2 (352-432)||(5013219-5013301)
chr2 (351-447)||(12896434-12896532)
chr2 (345-449)||(44543932-44544038)
chr2 (351-449)||(12898023-12898123)
chr2 (379-492)||(11736330-11736441)
chr2 (391-539)||(29549833-29549969)
chr2 (388-492)||(5001340-5001442)
chr2 (388-492)||(5013010-5013112)
chr2 (351-449)||(3249805-3249905)
chr2 (351-449)||(37131494-37131593)
chr2 (354-491)||(41326372-41326508)
chr2 (502-539)||(6348046-6348083)
chr2 (502-539)||(44543598-44543635)
chr2 (503-539)||(5001288-5001324)
chr2 (503-539)||(5013109-5013145)
chr2 (391-449)||(19640349-19640407)
chr2 (391-449)||(19838942-19839000)
chr2 (408-449)||(627635-627676)
chr2 (463-492)||(41326706-41326735)
chr2 (502-539)||(44543810-44543847)
[»] chr1 (53 HSPs)
chr1 (351-492)||(44263089-44263229)
chr1 (346-449)||(51113901-51114006)
chr1 (351-492)||(318555-318695)
chr1 (351-492)||(38684015-38684155)
chr1 (345-449)||(3227229-3227334)
chr1 (346-449)||(27296332-27296437)
chr1 (346-492)||(42492130-42492276)
chr1 (346-449)||(51114085-51114190)
chr1 (347-492)||(21617752-21617896)
chr1 (345-449)||(44262658-44262764)
chr1 (346-449)||(5428523-5428628)
chr1 (345-491)||(16165652-16165798)
chr1 (351-449)||(1156071-1156171)
chr1 (351-449)||(27296162-27296262)
chr1 (351-449)||(51113723-51113823)
chr1 (351-539)||(42497206-42497397)
chr1 (351-449)||(42496939-42497039)
chr1 (351-448)||(51272499-51272598)
chr1 (346-426)||(28950016-28950098)
chr1 (355-449)||(6537661-6537757)
chr1 (346-448)||(44263305-44263409)
chr1 (351-492)||(52740700-52740841)
chr1 (351-440)||(33375630-33375721)
chr1 (346-449)||(1647538-1647643)
chr1 (346-449)||(5428928-5429033)
chr1 (351-434)||(28950280-28950365)
chr1 (353-443)||(28949904-28949995)
chr1 (353-449)||(28950176-28950274)
chr1 (405-449)||(5429108-5429152)
chr1 (345-449)||(30083972-30084079)
chr1 (352-443)||(4100597-4100691)
chr1 (379-449)||(44099676-44099747)
chr1 (351-449)||(18912327-18912428)
chr1 (379-539)||(24595087-24595246)
chr1 (502-539)||(51114064-51114101)
chr1 (351-449)||(42497117-42497217)
chr1 (404-443)||(45417612-45417651)
chr1 (350-449)||(18912214-18912316)
chr1 (404-449)||(12115360-12115405)
chr1 (346-434)||(24595230-24595313)
chr1 (502-539)||(28950082-28950119)
chr1 (502-539)||(51113880-51113917)
chr1 (359-492)||(4100758-4100890)
chr1 (344-420)||(6537465-6537543)
chr1 (351-443)||(42497480-42497574)
chr1 (502-539)||(42492324-42492361)
chr1 (463-492)||(45417352-45417381)
chr1 (404-449)||(52584989-52585034)
chr1 (464-492)||(21618069-21618097)
chr1 (464-492)||(21618274-21618302)
chr1 (460-492)||(24595321-24595353)
chr1 (503-539)||(42497028-42497064)
chr1 (460-492)||(47790758-47790790)
[»] chr8 (40 HSPs)
chr8 (345-449)||(23960806-23960911)
chr8 (351-449)||(23828133-23828233)
chr8 (351-449)||(23830951-23831051)
chr8 (346-449)||(37198304-37198409)
chr8 (351-449)||(23085860-23085960)
chr8 (374-492)||(38111368-38111484)
chr8 (351-491)||(32062815-32062957)
chr8 (354-492)||(27853636-27853773)
chr8 (351-449)||(37410078-37410178)
chr8 (351-491)||(29580006-29580144)
chr8 (346-449)||(37198119-37198225)
chr8 (345-449)||(1197872-1197978)
chr8 (345-449)||(3459141-3459247)
chr8 (351-449)||(30439048-30439151)
chr8 (353-449)||(39922094-39922192)
chr8 (351-449)||(35617681-35617782)
chr8 (349-449)||(23838348-23838451)
chr8 (345-444)||(13797436-13797537)
chr8 (346-449)||(23960588-23960692)
chr8 (346-492)||(33198828-33198972)
chr8 (346-539)||(37197823-37198023)
chr8 (379-449)||(34947505-34947576)
chr8 (379-449)||(40399500-40399571)
chr8 (346-449)||(37426111-37426216)
chr8 (351-449)||(44429050-44429150)
chr8 (359-442)||(18308258-18308343)
chr8 (351-418)||(23838173-23838242)
chr8 (346-398)||(39921968-39922021)
chr8 (403-443)||(1276535-1276575)
chr8 (351-449)||(43419036-43419132)
chr8 (346-441)||(44429219-44429316)
chr8 (345-490)||(2084870-2085015)
chr8 (346-396)||(37197788-37197839)
chr8 (508-539)||(44429204-44429235)
chr8 (508-539)||(44433956-44433987)
chr8 (502-539)||(37198007-37198044)
chr8 (502-539)||(39922005-39922042)
chr8 (460-492)||(27854388-27854420)
chr8 (345-396)||(39922226-39922278)
chr8 (460-492)||(44433737-44433769)
[»] chr6 (23 HSPs)
chr6 (346-492)||(17201592-17201737)
chr6 (346-490)||(23610427-23610570)
chr6 (351-492)||(25068188-25068329)
chr6 (347-492)||(9828915-9829059)
chr6 (346-449)||(32208413-32208518)
chr6 (351-449)||(4811068-4811168)
chr6 (351-449)||(17906806-17906906)
chr6 (351-449)||(27579598-27579698)
chr6 (346-443)||(23622213-23622312)
chr6 (347-449)||(27315283-27315386)
chr6 (351-449)||(808829-808930)
chr6 (351-539)||(25067962-25068151)
chr6 (346-449)||(17202845-17202950)
chr6 (351-492)||(4100280-4100424)
chr6 (351-449)||(26832522-26832622)
chr6 (381-449)||(17202661-17202731)
chr6 (351-433)||(808472-808556)
chr6 (351-445)||(15130899-15130995)
chr6 (345-415)||(29201552-29201624)
chr6 (463-492)||(4100056-4100085)
chr6 (502-539)||(32208502-32208539)
chr6 (460-492)||(23902615-23902647)
chr6 (381-449)||(32208577-32208645)
[»] chr4 (52 HSPs)
chr4 (347-491)||(4941674-4941817)
chr4 (346-449)||(48076185-48076290)
chr4 (351-492)||(23952471-23952610)
chr4 (346-449)||(28813220-28813324)
chr4 (346-449)||(43161746-43161851)
chr4 (346-449)||(47768947-47769052)
chr4 (354-539)||(48076371-48076556)
chr4 (346-449)||(48076540-48076645)
chr4 (346-449)||(8118378-8118481)
chr4 (351-449)||(23952786-23952886)
chr4 (351-449)||(36639172-36639272)
chr4 (351-449)||(54653655-54653755)
chr4 (344-449)||(28379768-28379874)
chr4 (347-492)||(2481617-2481758)
chr4 (344-444)||(22292891-22292993)
chr4 (345-449)||(44500666-44500772)
chr4 (351-444)||(47631539-47631633)
chr4 (346-492)||(52689584-52689729)
chr4 (351-449)||(21585562-21585662)
chr4 (351-449)||(24049565-24049665)
chr4 (343-446)||(28379981-28380085)
chr4 (361-449)||(22292701-22292791)
chr4 (346-449)||(36639340-36639445)
chr4 (351-449)||(53144851-53144951)
chr4 (346-443)||(7796780-7796879)
chr4 (373-449)||(8118620-8118697)
chr4 (346-449)||(8397748-8397853)
chr4 (381-449)||(21581282-21581351)
chr4 (351-449)||(32010688-32010789)
chr4 (351-492)||(7821303-7821443)
chr4 (351-449)||(12796126-12796226)
chr4 (351-449)||(28389777-28389877)
chr4 (351-449)||(29967179-29967279)
chr4 (351-449)||(47631360-47631460)
chr4 (344-491)||(7821512-7821658)
chr4 (347-449)||(2177260-2177364)
chr4 (351-449)||(7809348-7809448)
chr4 (408-449)||(8079354-8079395)
chr4 (379-447)||(43161933-43162002)
chr4 (389-492)||(8479110-8479208)
chr4 (404-449)||(24049338-24049383)
chr4 (503-539)||(21585473-21585509)
chr4 (503-539)||(43161835-43161871)
chr4 (460-492)||(54653813-54653845)
chr4 (379-449)||(7809561-7809632)
chr4 (463-492)||(8397378-8397407)
chr4 (351-395)||(23952613-23952658)
chr4 (351-395)||(23952661-23952706)
chr4 (346-398)||(24046060-24046113)
chr4 (412-449)||(41852151-41852188)
chr4 (503-539)||(48076343-48076379)
chr4 (464-492)||(52689181-52689209)
[»] scaffold0018 (1 HSPs)
scaffold0018 (346-449)||(163808-163913)
[»] scaffold0013 (1 HSPs)
scaffold0013 (346-449)||(102700-102803)
[»] scaffold0294 (1 HSPs)
scaffold0294 (351-441)||(12399-12491)
[»] scaffold0240 (2 HSPs)
scaffold0240 (351-449)||(13092-13192)
scaffold0240 (384-492)||(13285-13391)
[»] scaffold0504 (1 HSPs)
scaffold0504 (351-449)||(1539-1640)
[»] scaffold0320 (1 HSPs)
scaffold0320 (351-449)||(14586-14686)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 50 - 492
Target Start/End: Original strand, 35159122 - 35159558
Alignment:
Q  50 atcaaagtgcaagactatccgaatatataaacaccattggcaacctcaggtttgccactaatgacactataattaagaaacaaacaatattgaccgagtc 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35159122 atcaaagtgcaagactatccgaatatataaacaccattggcaacctcaggtttgccactaatgacactataattaagaaacaaacaatattgaccgagtc 35159221  T
Q  150 tattatagtgaatgagatgataacactaataacggttactagaagtaaattggcgcaggtgcttgatagcagagattctcttctggnnnnnnnnnnnnnn 249  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||||| |||||||||| ||||||||||||| ||                  
T  35159222 tattatagtgaatgagatgataacactaataacggttacta------aattggcgcagatgcttgatagtagagattctcttcaggaaaaaaaaaaaaaa 35159315  T
Q  250 ntcaatacaaagatatatttattttagtagttattaaatttaattttgagcttttttaatcgagataaaaaatgtgcataattgcaaatac----ataca 345  Q
     ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  35159316 atcaatacaaagatatatttattttagtagttattaaatttaatt--gagcttttttaatcgagataaaaaatgtgcataattgcaaatacatacataca 35159413  T
Q  346 tatctttatttattaattttgttacgttgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattcc 445  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  35159414 tatctttatttattaattttgttacgttgcaacaatttaacctaatttttcccgttcttttgctttattaggtttgcaattatttaacctaaccaattcc 35159513  T
Q  446 atctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||||          ||||||||||||||||||||| |||||||||||    
T  35159514 atct--aaaaaaaatgcatcgcaccaatttcatttatatcctcttgc 35159558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 351 - 539
Target Start/End: Original strand, 16528600 - 16528788
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| | ||| ||||||||||||  |||||| | || ||||||||||||||||||||||||||||||| ||||||||| |||    
T  16528600 ttatttattaattttgttacgtctacaacaatttaacctaacattttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattctatc 16528699  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg-cgnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
    |          |||||||||||||||||||| ||||||||||| |         ||||||||||||||||||| ||||||||||||||||||    
T  16528700 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgccttattttttgaagaaaatattttctacacttatccttatttattaat 16528788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 7673330 - 7673224
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||||||  |||||| |||| |||||||||||||||||||||||||| |||||||    
T  7673330 tatctttatttattaattttgttacgtctgcagcaatttaacctaatttttttcccgttcatttgttttattaggtttgcaattatttaacctaacaaat 7673231  T
Q  443 tccatct 449  Q
    | |||||    
T  7673230 ttcatct 7673224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 346 - 444
Target Start/End: Complemental strand, 41093000 - 41092901
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||| ||||||||||||||||||| || ||||  ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  41093000 tatccttatttattaattttgttaggtctgcatcaatttaacctaatttattccgctcttttgctttattaggtttgcaattatttaacctaacaaattc 41092901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 9488175 - 9488075
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||| |||||||| ||||    
T  9488175 ttatttattaattttgttacgtctgcaacaatttaacctaatttttttccgtttatttgctttattagatttgcaattatttaacctaacaaatttcatc 9488076  T
Q  449 t 449  Q
    |    
T  9488075 t 9488075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 11313974 - 11314080
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||| || ||||    
T  11313974 tatccttatttattaattttgttacgtctgcagcaatttaacctaattttttttccgctcatttgctttattaggtttgcaattatttaacctaaaaaat 11314073  T
Q  443 tccatct 449  Q
    |||||||    
T  11314074 tccatct 11314080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 35159699 - 35159797
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||| ||||||||    
T  35159699 tatccttatttattaattttgttacgtctgcagcaatttaacctattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 35159797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 16529130 - 16529235
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||||||||||| || || ||||||||||||| ||||||||||||||||  ||||||||    
T  16529130 tatccttatttattaattttgttacgtctgcagcaatttaacctaattttttcgcgctcatttgctttattagatttgcaattatttaacgtaacaaatt 16529229  T
Q  444 ccatct 449  Q
    ||||||    
T  16529230 ccatct 16529235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 43395063 - 43394919
Alignment:
Q  346 tatctttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||| |||||||| |||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||    
T  43395063 tatccttatttattaattt-gttacgtttgcagcaatttaacctaattttttcctgctcatttgctttattaggtttgcaattatttaacctaacaaatt 43394965  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
     |||||          |||||||||||||||||||| ||||||||||||    
T  43394964 tcatct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 43394919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 7127559 - 7127659
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||| | || ||||||| ||||||||||||||||||||| | |||||||||||||    
T  7127559 ttatttattaattttgttacgtttgcagcaatttaacctaattttttcctgctcatttgcttgattaggtttgcaattatttaaactaacaaattccatc 7127658  T
Q  449 t 449  Q
    |    
T  7127659 t 7127659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 26523265 - 26523125
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||||| | | |||||||||||||    
T  26523265 ttatttattaattttgttatgtctgcatcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttgatctaacaaattccatc 26523166  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  26523165 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 26523125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 356 - 539
Target Start/End: Original strand, 11313807 - 11313990
Alignment:
Q  356 tattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnn 453  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |  | ||| ||||||||||||||||||||||||||| ||||||||||||||        
T  11313807 tattaattttgttacgtctgcaacaatttaacctaattttttcccgcacattttctttattaggtttgcaattatttaacctaacaaattccatctaaaa 11313906  T
Q  454 nnnnnntgcatcgcaccaatttcatttctatcctcttgcgnnnnnnnng-aagaaaatattttctacatttatccttatttattaat 539  Q
          || ||| ||||||||||||| ||||||||||||           |||||||||||||||||| ||||||||||||||||||    
T  11313907 aaa---tgtatcccaccaatttcattcctatcctcttgccttttttttttaagaaaatattttctacacttatccttatttattaat 11313990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 11313634 - 11313740
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||||||||||| |||||| | ||| |||||||||||||||||||| | || ||| ||||||||||||||||||||||||||| |||||||    
T  11313634 atatccttatttattaatttttttacgtctacaacaatttaacctaattttttcccgctcattttctttattaggtttgcaattatttaacctaacaaat 11313733  T
Q  443 tccatct 449  Q
    || ||||    
T  11313734 tctatct 11313740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 449
Target Start/End: Complemental strand, 12442259 - 12442158
Alignment:
Q  350 tttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    |||||||||||||| ||||| || ||||  |||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| |||||||| |||    
T  12442259 tttatttattaattatgttaggtctgcagcaatttaacctaattttttcccgctcatttgccttattaggtttgcaattatttaacctaacaaattacat 12442160  T
Q  448 ct 449  Q
    ||    
T  12442159 ct 12442158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 24351582 - 24351437
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||| ||| || ||||  |||||||||||||| ||||| | || |||| |||||||||||||||||||||||||| ||||||||    
T  24351582 tatccttatttattaatttttttaggtctgcagtaatttaacctaattatttcccgctcatttgttttattaggtttgcaattatttaacctaacaaatt 24351483  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
     |||||          |||||||||||||||||||| ||||||||||||    
T  24351482 tcatct---aaaaaaatgcatcgcaccaatttcattactatcctcttgc 24351437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 346 - 447
Target Start/End: Original strand, 16526192 - 16526296
Alignment:
Q  346 tatctttatttattaa-ttttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||| ||||||||||| ||||||||||| ||||  ||||||||||||||||||  |  || ||||||||||||||||||||||||||||||| |||||||    
T  16526192 tatccttatttattaaattttgttacgtctgcatcaatttaacctaattttttttcactcatttgctttattaggtttgcaattatttaacctaacaaat 16526291  T
Q  443 tccat 447  Q
    |||||    
T  16526292 tccat 16526296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 19122243 - 19122343
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| ||| |||  |||||||||||||||||| ||  || ||||||||||||||||||||||| ||||||| ||||||||| |||    
T  19122243 ttatttattaattttgttaggtttgcatcaatttaacctaatttttttccactcatttgctttattaggtttgcaattgtttaacctaacaaattctatc 19122342  T
Q  449 t 449  Q
    |    
T  19122343 t 19122343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 23138027 - 23138131
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||| |||||||||||||| |||| || ||||  | ||||||||||||||||||| || ||||||||||||||||||||||||| ||||  ||||| |||    
T  23138027 tatccttatttattaatttcgttaggtctgcagcattttaacctaattttttccgctcatttgctttattaggtttgcaattatataacgtaacaagttc 23138126  T
Q  445 catct 449  Q
    |||||    
T  23138127 catct 23138131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 346 - 444
Target Start/End: Complemental strand, 41093180 - 41093080
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  ||||||||||||||| |||| | |  ||||||||||||||||||||||||||||||| ||||||||    
T  41093180 tatccttatttattaattttgttaggtctgcatcaatttaacctaatttattcctgctgatttgctttattaggtttgcaattatttaacctaacaaatt 41093081  T
Q  444 c 444  Q
    |    
T  41093080 c 41093080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 460 - 539
Target Start/End: Original strand, 35159636 - 35159715
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgcgnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||| ||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  35159636 tgcatcgcaccaattttattcctatcctcttgcgttttttttgaagaaaatattttctacatttatccttatttattaat 35159715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 16528954 - 16529051
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||||||||  | | || ||||| ||||||||||||||||||||||||| ||||||||    
T  16528954 tatccttatttattaattttgttacgtctgcagcaatttaacctaattttc-ctgctcatttgccttattaggtttgcaattatttaacctaacaaatt 16529051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 26523366 - 26523268
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||| ||||||||||||||||||| || ||||  |||||||||||||||||||| | |  ||||||||||||||||||||||||||| ||| |||||||    
T  26523366 tatccttatttattaattttgttatgtctgcatcaatttaacctaattttttcccgcttatttgctttattaggtttgcaattatttgacctaacaaat 26523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 492
Target Start/End: Complemental strand, 31486943 - 31486801
Alignment:
Q  349 ctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattcca 446  Q
    ||||||||||||||||| ||| || ||||| ||||||||||||| |||||| |||| |||||| |||||||||  || | |||||||| |||||||||||    
T  31486943 ctttatttattaatttttttaggtctgcaacaatttaacctaatattttcccgttcatttgctgtattaggttaacagtaatttaacctaacaaattcca 31486844  T
Q  447 tctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||          |||||||||||||||||||| ||||||||||||    
T  31486843 tct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 31486801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 19121907 - 19122007
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||| |   || ||||||||||||||||||||||| ||||||| ||||||||| |||    
T  19121907 ttatttattaattttgttaggtctgcatcaatttaacctaatttttttcaactcatttgctttattaggtttgcaattgtttaacctaacaaattctatc 19122006  T
Q  449 t 449  Q
    |    
T  19122007 t 19122007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 16305348 - 16305446
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||||||| ||| | || ||||||| ||||||||  ||| || ||||||||||||||||||||||||||||| | || |||||||||||    
T  16305348 ttatttattaattttgttaggtttgtaataatttaaactaattttc-ccgctcatttgctttattaggtttgcaattatttaatctaataaattccatct 16305446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 492
Target Start/End: Complemental strand, 24350995 - 24350884
Alignment:
Q  379 aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttca 477  Q
    |||||||||||||| ||||| | || |||| |||||||||||||||||||||||||| |||||||| |||||          ||||||||||||||||||    
T  24350995 aatttaacctaattatttcccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatct---aaaaaaatgcatcgcaccaatttca 24350899  T
Q  478 tttctatcctcttgc 492  Q
    || ||||||||||||    
T  24350898 ttactatcctcttgc 24350884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 433
Target Start/End: Original strand, 24326548 - 24326609
Alignment:
Q  373 tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaac 433  Q
    ||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||    
T  24326548 tgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaac 24326609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 24350793 - 24350732
Alignment:
Q  373 tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaac 433  Q
    ||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||    
T  24350793 tgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaac 24350732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 24351347 - 24351286
Alignment:
Q  373 tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaac 433  Q
    ||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||    
T  24351347 tgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaac 24351286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 447
Target Start/End: Complemental strand, 14166289 - 14166190
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc--cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    ||||||||||||||||||| || ||||  |||||||| |||||||||   |  || |||||||||||| |||||||||||||||||| ||||||||||||    
T  14166289 ttatttattaattttgttaggtctgcagtaatttaacttaatttttttttcagtcatttgctttattatgtttgcaattatttaacctaacaaattccat 14166190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 16528793 - 16528881
Alignment:
Q  363 tttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||| ||||  |||||||||||||||||||| | || ||||| ||||||||||||||| ||||||||| ||||| ||||||||    
T  16528793 tttgttacgtctgcagcaatttaacctaattttttcccgctcatttgccttattaggtttgcaaatatttaacctaacaacttccatct 16528881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 491
Target Start/End: Complemental strand, 31487194 - 31487051
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaat-tttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  ||||||||||||| |||| ||| || |||||| ||||||||| ||| | |||||||| ||||||||    
T  31487194 tatccttatttattaattttgttaggtctgcagtaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaacctaacaaatt 31487095  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
     |||||          |||||||||||||||||||| |||||||||||    
T  31487094 tcatct----aaaaaatgcatcgcaccaatttcattcctatcctcttg 31487051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 539
Target Start/End: Complemental strand, 43395207 - 43395047
Alignment:
Q  379 aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttca 477  Q
    |||||||| | ||||||||| | || ||||||||||||||||| ||||||||||||| |||||||| ||| |          ||||||||||||||||||    
T  43395207 aatttaacttgattttttcccgctcatttgctttattaggtttccaattatttaacctaacaaattacatgt-aaaaaaatatgcatcgcaccaatttca 43395109  T
Q  478 tttctatcctcttgcgnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
    || |||||||||  |          |||||||||||||||||| ||||||||||||||||||    
T  43395108 ttcctatcctctaacttttttttttaagaaaatattttctacacttatccttatttattaat 43395047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 26523387 - 26523350
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26523387 gaagaaaatattttctacatttatccttatttattaat 26523350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 443
Target Start/End: Original strand, 10409525 - 10409619
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||||||||||||||||||||| | ||  ||||||| |||||||||| ||| || ||| ||| | ||| ||||||||||||||||| ||||||||    
T  10409525 ttatttattaattttgttacgtctccagtaatttaatctaattttttcccgctcattttcttcactagatttgcaattatttaacctaacaaatt 10409619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 7673170 - 7673134
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7673170 aagaaaatattttatacatttatccttatttattaat 7673134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 16528934 - 16528970
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||| ||||||||||||||||||    
T  16528934 aagaaaatattttctacacttatccttatttattaat 16528970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 16529110 - 16529146
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||| ||||||||||||||||||    
T  16529110 aagaaaatattttctacacttatccttatttattaat 16529146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 7673150 - 7673100
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttt 395  Q
    |||| |||||||||||||||||||||| ||||  |||||||||||||||||    
T  7673150 tatccttatttattaattttgttacgtctgcagcaatttaacctaattttt 7673100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 41093021 - 41092984
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  41093021 gaagaaaatattttatacacttatccttatttattaat 41092984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 16528529 - 16528561
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  16528529 tgcatcgcaccaatttcattgctatcctcttgc 16528561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 394
Target Start/End: Original strand, 38268880 - 38268924
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttt 394  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||    
T  38268880 ttatttattaattttgttaggtctgcaacaatttaacctaatttt 38268924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 41093066 - 41093034
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||||||||||||||| |||||||||||    
T  41093066 tgcatcgcaccaatttcatttttatcctcttgc 41093034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 56)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 4681001 - 4680862
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||    
T  4681001 ttatttattaattttgttacgtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatc 4680902  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||||||||||||||||    
T  4680901 t----aaaaaatgcatcgcaccaatttcatttctatcctcttgc 4680862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 11650119 - 11650013
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||||||||||||||| || ||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||    
T  11650119 atatccttatttattaattttgttaggtctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaat 11650020  T
Q  443 tccatct 449  Q
    |||||||    
T  11650019 tccatct 11650013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 344 - 490
Target Start/End: Complemental strand, 23591526 - 23591381
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| |||||||||||||||||||  | ||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||    
T  23591526 catatccttatttattaattttgttagatctgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaa 23591427  T
Q  442 ttccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctctt 490  Q
    ||||||||          |||||||||||||||||||| ||||||||||    
T  23591426 ttccatct---aaaaaaatgcatcgcaccaatttcattcctatcctctt 23591381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 12140966 - 12140826
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||| |||||||| ||||    
T  12140966 ttatttattaattttgttacgtctgcagcaatttaacctaatttttttccgctcatttgcgttattaggtttgcaattatttaacctaacaaatttcatc 12140867  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  12140866 t---aaaagaatgcatcgcaccaatttcattcctatcctcttgc 12140826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 2527059 - 2526918
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    ||||||||||||||||||| || ||||  ||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||| ||| |||| |||    
T  2527059 ttatttattaattttgttaggtctgcagcaatttaacctaatttttttcccgctcatttgctttattaggtttgcaattatttaacctaactaattacat 2526960  T
Q  448 ctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||          |||||||||||||||||||||||||||||||||    
T  2526959 ct---aaaaaaatgcatcgcaccaatttcatttctatcctcttgc 2526918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 9142071 - 9141966
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||    
T  9142071 tatccttatttattaattttgttatgtctgcagcaatttaacctaattttttcctgctcatttgctttattaggtttgcaattatttaacctaacaaatt 9141972  T
Q  444 ccatct 449  Q
     |||||    
T  9141971 tcatct 9141966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 22774020 - 22773877
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||| || ||||||||| || |||||||||||||||| | ||||||||     
T  22774020 tatccttatttattaattttgttacgtctgcaacaatttaacctaatttttcccgctcatttgctttactatgtttgcaattatttaatctaacaaattt 22773921  T
Q  445 catctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||           |||||||||||||||||||| |||||||||||    
T  22773920 catctaaaaaac----gcatcgcaccaatttcatttatatcctcttgc 22773877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 18486634 - 18486734
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| ||| |||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||| ||||    
T  18486634 ttatttattaattttgttaggtttgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 18486733  T
Q  449 t 449  Q
    |    
T  18486734 t 18486734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 19222099 - 19222206
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttt--ttccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    ||||| |||||||||||||||||||  | ||||  ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  19222099 atatccttatttattaattttgttagttctgcagcaatttaacctaattttttttccgttcatttgctttattaggtttacaattatttaacctaacaaa 19222198  T
Q  442 ttccatct 449  Q
    ||||||||    
T  19222199 ttccatct 19222206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 35124725 - 35124865
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||| |||||| ||| |||| |||||||| |||||||||  ||||| ||||||||||||||||||||||||||||||| |||||||||| ||    
T  35124725 ttatttattaatgttgttaggtttgcaacaatttaacttaattttttgtcgttcatttgctttattaggtttgcaattatttaacctaacaaattccgtc 35124824  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  35124825 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 35124865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 346 - 443
Target Start/End: Complemental strand, 11646041 - 11645942
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||| || ||||||||||||||||| | || |||||||||||||||||| |||||||||||| ||||||||    
T  11646041 tatccttatttattaattttgttacgtctgcaacaacttaacctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatt 11645942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 346 - 447
Target Start/End: Complemental strand, 11646507 - 11646404
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  || |||| |||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||    
T  11646507 tatccttatttattaattttgttacgtctgcagcaacttaatctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 11646408  T
Q  444 ccat 447  Q
    ||||    
T  11646407 ccat 11646404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 344 - 492
Target Start/End: Complemental strand, 48640913 - 48640765
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| ||||||||||||||||| | || ||||  ||||||||||||||| |||| | || ||||||||||||||||||||||||||||||| ||||||    
T  48640913 catatccttatttattaattttgtaaggtctgcagcaatttaacctaatttcttcccgctcatttgctttattaggtttgcaattatttaacctaacaaa 48640814  T
Q  442 ttccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    || |||||          |||||||||||||||||||| ||||||||||||    
T  48640813 tttcatct--aaaaaaaatgcatcgcaccaatttcattcctatcctcttgc 48640765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 350 - 492
Target Start/End: Original strand, 16671604 - 16671745
Alignment:
Q  350 tttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    ||||||| || ||||||||| || ||||  ||| |||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||    
T  16671604 tttatttttttattttgttaggtctgcagcaatataacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccat 16671703  T
Q  448 ctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||          |||||||||||||||||||| ||||||||||||    
T  16671704 ct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 16671745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 350 - 492
Target Start/End: Original strand, 17645972 - 17646113
Alignment:
Q  350 tttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    ||||||| || ||||||||| || ||||  ||| |||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||    
T  17645972 tttatttttttattttgttaggtctgcagcaatataacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccat 17646071  T
Q  448 ctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||          |||||||||||||||||||| ||||||||||||    
T  17646072 ct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 17646113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 23591736 - 23591636
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgtt-cttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||| || || ||||| |||| || |||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||||    
T  23591736 ttatttattaattttgctaagtgtgcaacaattgaagctaattttttccctttcatttgctttattaggtttgcaattatttaacctaacaaattccatc 23591637  T
Q  449 t 449  Q
    |    
T  23591636 t 23591636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 45419741 - 45419601
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  ||||||||||||||||||   | || ||||||||||||||||||||||||||||||| |||||||| ||||    
T  45419741 ttatttattaattttgttaggtctgcagtaatttaacctaatttttttaagctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 45419642  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||||||||| ||||||    
T  45419641 t---aaaaagatgcatcgcaccaatttcatttctatcatcttgc 45419601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 352 - 491
Target Start/End: Complemental strand, 45419947 - 45419808
Alignment:
Q  352 tatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||| || ||||  ||| ||||||| ||||||  ||| || |||||||||||||||||| |||||||||||| |||||||||||||    
T  45419947 tatttattaattttgttaggtctgcatcaatctaacctatttttttttccgctcatttgctttattaggtttgtaattatttaacctaacaaattccatc 45419848  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
    |          ||||||||||||||||||||||||||||||||    
T  45419847 t---aaaaaaatgcatcgcaccaatttcatttctatcctcttg 45419808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 16492649 - 16492550
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||||||| || ||||  |||||||| || ||||||||| || |||||||||||| |||||||||||||||||| |||||||| |||||    
T  16492649 ttatttattaattttgttaggtctgcagcaatttaacttatttttttccgctcatttgctttattatgtttgcaattatttaacctaacaaatttcatct 16492550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 30991454 - 30991560
Alignment:
Q  346 tatctttatttattaattttgttacgtt-gcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||| |||||||| ||||||| |||||| |||| |||||||| |||||||||  ||| || |||||||||||| |||||||||||||||||| |||||||    
T  30991454 tatccttatttatcaattttgatacgtttgcaacaatttaacttaattttttttccgctcatttgctttattatgtttgcaattatttaacctaacaaat 30991553  T
Q  443 tccatct 449  Q
    |||||||    
T  30991554 tccatct 30991560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 9142238 - 9142148
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaaca 439  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||| | || ||||||||||| ||||||||||||||||||| ||||    
T  9142238 ttatttattaattttgttaggtctgcaataatttaacctaattttttcccgctcatttgctttatttggtttgcaattatttaacctaaca 9142148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 34837187 - 34837288
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    ||||||||||||||||||| || ||||  ||||||||||||||||||  ||| |  ||||||||||||||||| ||||||||||||| ||||||||||||    
T  34837187 ttatttattaattttgttaggtctgcagcaatttaacctaattttttttccgcttatttgctttattaggtttacaattatttaacctaacaaattccat 34837286  T
Q  448 ct 449  Q
    ||    
T  34837287 ct 34837288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 46264389 - 46264288
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    |||||||||||||||||||||| ||||| || | |||||||||||||  ||  || ||||||||||||||||||||||||||||||| ||||||||| ||    
T  46264389 ttatttattaattttgttacgtctgcaacaactcaacctaatttttttccccctcatttgctttattaggtttgcaattatttaacctaacaaattctat 46264290  T
Q  448 ct 449  Q
    ||    
T  46264289 ct 46264288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 4681699 - 4681603
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||||||| ||||  |||||||| |||||||| |||||   |||||||||||||||||||||||||||||  |||||||| |||||    
T  4681699 ttatttattaattttgttacgtctgcagcaatttaacttaatttttcccgtt---ttgctttattaggtttgcaattatttaacttaacaaatttcatct 4681603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 27716419 - 27716314
Alignment:
Q  346 tatctttatttattaattttgttacgttgcaaa-aatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| ||  | |  ||||||||||||||||||||   || ||||||||||||||||||||||||||||||| ||||||||    
T  27716419 tatccttatttattaattttgttaggtctctagcaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaatt 27716320  T
Q  444 ccatct 449  Q
    ||||||    
T  27716319 ccatct 27716314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 27716641 - 27716536
Alignment:
Q  346 tatctttatttattaattttgttacgttg-caaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| |||  ||  |||||||||||||||| ||| | || ||||||||||||||||||||||||||||||| ||||| ||    
T  27716641 tatccttatttattaattttgttaggttttcagcaatttaacctaattttatcccgctcatttgctttattaggtttgcaattatttaacctaacaactt 27716542  T
Q  444 ccatct 449  Q
    ||||||    
T  27716541 ccatct 27716536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 354 - 488
Target Start/End: Complemental strand, 2853320 - 2853186
Alignment:
Q  354 tttattaattttgttacgtt-gcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctn 450  Q
    ||||||||||||||||| || | |  ||||||||||||||||||  | |||| |||| |||||||||||||||||||||||||| |||||||| |||||     
T  2853320 tttattaattttgttacatttgtatcaatttaacctaattttttttcagttcatttgttttattaggtttgcaattatttaacctaacaaatttcatct- 2853222  T
Q  451 nnnnnnnnntgcatcgcaccaatttcatttctatcctc 488  Q
             |||||||||||||||||||||||||||||    
T  2853221 --aaaaaaatgcatcgcaccaatttcatttctatcctc 2853186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 11646622 - 11646705
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaatta 427  Q
    |||| |||||||||||||||||||||| ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||    
T  11646622 tatccttatttattaattttgttacgtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaatta 11646705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 344 - 449
Target Start/End: Original strand, 16671239 - 16671346
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaattt-aacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| ||||||||||||||||||| || ||||  ||||| |||| ||| ||||||| || |||||| |||||||||||||||||||||||| ||||||    
T  16671239 catatccttatttattaattttgttaggtctgcagcaattttaaccaaatattttccgctcatttgctctattaggtttgcaattatttaacctaacaaa 16671338  T
Q  442 ttccatct 449  Q
    || |||||    
T  16671339 tttcatct 16671346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 344 - 449
Target Start/End: Original strand, 17645607 - 17645714
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaattt-aacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| ||||||||||||||||||| || ||||  ||||| |||| ||| ||||||| || |||||| |||||||||||||||||||||||| ||||||    
T  17645607 catatccttatttattaattttgttaggtctgcagcaattttaaccaaatattttccgctcatttgctctattaggtttgcaattatttaacctaacaaa 17645706  T
Q  442 ttccatct 449  Q
    || |||||    
T  17645707 tttcatct 17645714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 18487180 - 18487251
Alignment:
Q  379 aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||| |||||    
T  18487180 aatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 18487251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 344 - 449
Target Start/End: Original strand, 21224131 - 21224238
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| ||||||||||||||||||| || ||||  |||||||||||||||||| ||| |  ||||||||||||||||| ||||||||||||| |||||     
T  21224131 catatccttatttattaattttgttaggtctgcagcaatttaacctaatttttttccgctaatttgctttattaggtttacaattatttaacctaacaag 21224230  T
Q  442 ttccatct 449  Q
    || |||||    
T  21224231 tttcatct 21224238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 48641546 - 48641447
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||| |||||| ||||  || |||||||||||||| | | || |||||||||||| |||||||||||||||||| |||||||| |||||    
T  48641546 ttatttattaattttcttacgtctgcaggaacttaacctaatttttcctgctcatttgctttattaagtttgcaattatttaacctaacaaatttcatct 48641447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 4681228 - 4681150
Alignment:
Q  372 ttgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||| |||||||||||||||||||| | || |||||||||||| |||||||||||||||||| || |||||||||||    
T  4681228 ttgcaacaatttaacctaattttttcccgctcatttgctttattatgtttgcaattatttaacctaataaattccatct 4681150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 40686967 - 40686897
Alignment:
Q  379 aatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||| ||||||||||| |||  ||||||||||||||||||||||||||||||| |||||||| |||||    
T  40686967 aatttaagctaattttttcagtttatttgctttattaggtttgcaattatttaacctaacaaattacatct 40686897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 22324279 - 22324424
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatt-ttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||||||||||||||||||||||| || ||||  |||||||||||||| ||| ||| || ||| |||| ||||||||| ||||||| |||| ||||||||    
T  22324279 tatctttatttattaattttgttaggtctgcagcaatttaacctaattgtttcccgctcatttacttttttaggtttgtaattattcaacctaacaaatt 22324378  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
     |||||          |||||||||||||||||||| ||||||||||||    
T  22324379 tcatct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 22324424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 48641126 - 48641021
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || || |  |||||||| || |||||||| | || |||||||||||||||||||||||||||||||||| |||||    
T  48641126 tatccttatttattaattttgttaggtctgtagcaatttaacatagttttttcccgctcatttgctttattaggtttgcaattatttaaccaaaaaaatt 48641027  T
Q  444 ccatct 449  Q
     |||||    
T  48641026 tcatct 48641021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 2354770 - 2354670
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||| |||| |||||| | || |||||||||||||||||||||||||||||   |||||||||||||    
T  2354770 ttatttattaattttgttaggtctgcagcaatttaacgtaatgttttccagctcatttgctttattaggtttgcaattatttaatataacaaattccatc 2354671  T
Q  449 t 449  Q
    |    
T  2354670 t 2354670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 449
Target Start/End: Original strand, 43059223 - 43059291
Alignment:
Q  382 ttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||| || || ||||||||||||||||||||||||||||| | ||||||||||||||    
T  43059223 ttaacctaattttttctcgctcatttgctttattaggtttgcaattatttaatctaacaaattccatct 43059291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 32278241 - 32278158
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaa 432  Q
    ||||||||||||| |||||||| ||||  |||||||||||||||||||| | || ||| |||||||||||||||||||||||||    
T  32278241 ttatttattaattatgttacgtctgcagcaatttaacctaattttttcccgctcatttactttattaggtttgcaattatttaa 32278158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 34837442 - 34837541
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||| ||||||||| || | ||  |||||||| |||||||||||| || ||| ||||||||||||||||||||||| ||| |||||||| |||||    
T  34837442 ttatttatttattttgttaggtcttcagcaatttaacataattttttccgctcatttactttattaggtttgcaattattttacctaacaaatttcatct 34837541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 445
Target Start/End: Complemental strand, 11646312 - 11646218
Alignment:
Q  353 atttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattcc 445  Q
    ||||||||||||||||| || ||||  || ||||||||||||||| ||  || |||||||| |||||||||||||||||||||| ||||||||||    
T  11646312 atttattaattttgttatgtctgcagcaacttaacctaatttttttccactcatttgctttgttaggtttgcaattatttaacctaacaaattcc 11646218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 443
Target Start/End: Complemental strand, 40450206 - 40450112
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    ||||||||||||||||||| || ||||  ||||||||||||||| |||  | || ||||||||||||| ||||||||||||||||| ||||||||    
T  40450206 ttatttattaattttgttaggtctgcagcaatttaacctaatttattcgtgctcatttgctttattagatttgcaattatttaacctaacaaatt 40450112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 449
Target Start/End: Complemental strand, 1566591 - 1566513
Alignment:
Q  373 tgcaaaaatttaacctaattttttc--cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||| ||||||||||||||||||   ||  | ||||||||||||||||||||||||||||||| |||||||| |||||    
T  1566591 tgcaacaatttaacctaatttttttttcgcacatttgctttattaggtttgcaattatttaacctaacaaatttcatct 1566513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 21128040 - 21128136
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaat-tttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattcc 445  Q
    ||||||||||||||||||| || ||||  | ||||||||||| |||||||| |  |||||||||||| |||| || |||||||||| ||||||||||    
T  21128040 ttatttattaattttgttaggtctgcagcagtttaacctaatctttttccgctgatttgctttattacgtttccatttatttaacctaacaaattcc 21128136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 34837381 - 34837435
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc 397  Q
    |||||| ||||||||||||||||||| || ||||| |||||||||||||||||||    
T  34837381 catatccttatttattaattttgttaggtctgcaacaatttaacctaattttttc 34837435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 4454919 - 4455024
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttct-tttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||| ||| || ||||| || |||||||||| |||||| | |  |||||| ||||||||| ||| | |||||||| ||||||||    
T  4454919 tatccttatttattaattttattaggtctgcaacaacttaacctaatattttccctccaatttgctgtattaggttagcagtaatttaacctaacaaatt 4455018  T
Q  444 ccatct 449  Q
    ||||||    
T  4455019 ccatct 4455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 16671569 - 16671601
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||||||||||||||||    
T  16671569 tgcatcgcaccaatttcatttctatcctcttgc 16671601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 17645937 - 17645969
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||||||||||||||||    
T  17645937 tgcatcgcaccaatttcatttctatcctcttgc 17645969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Complemental strand, 1566312 - 1566283
Alignment:
Q  463 atcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||||||||||||||||||||||||    
T  1566312 atcgcaccaatttcatttctatcctcttgc 1566283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Complemental strand, 9141728 - 9141699
Alignment:
Q  463 atcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||||||||||||||||||||||||    
T  9141728 atcgcaccaatttcatttctatcctcttgc 9141699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Original strand, 21128383 - 21128412
Alignment:
Q  463 atcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||||||||||||||||||||||||    
T  21128383 atcgcaccaatttcatttctatcctcttgc 21128412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 6249925 - 6249957
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  6249925 tgcatcgcaccaatttcattcctatcctcttgc 6249957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 16671927 - 16671959
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  16671927 tgcatcgcaccaatttcattcctatcctcttgc 16671959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 17646295 - 17646327
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  17646295 tgcatcgcaccaatttcattcctatcctcttgc 17646327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 27712549 - 27712517
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  27712549 tgcatcgcaccaatttcattcctatcctcttgc 27712517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 341 - 490
Target Start/End: Original strand, 46451460 - 46451608
Alignment:
Q  341 atacatatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaac 438  Q
    |||| |||| |||||||||||||||||||||| ||||  |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||    
T  46451460 atacttatccttatttattaattttgttacgtctgcagtaatttaacctaattttttcccgttcatttgctttattaggtttgcaattatttaacctaac 46451559  T
Q  439 aaattccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctctt 490  Q
    |||||||||||          |||||||||||||||||||| ||||||||||    
T  46451560 aaattccatct---aaaataatgcatcgcaccaatttcattcctatcctctt 46451608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 36643233 - 36643133
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||    
T  36643233 ttatttattaattttgttacgtatgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatc 36643134  T
Q  449 t 449  Q
    |    
T  36643133 t 36643133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 837314 - 837209
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||| ||| || ||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||    
T  837314 tatccttatttattaattttattatgtctgcaacaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 837215  T
Q  444 ccatct 449  Q
    ||||||    
T  837214 ccatct 837209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 47503159 - 47503019
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| |||||||| ||||    
T  47503159 ttatttattaattttgttacgtctgcagcaatttaacctaattttttcccgctcatttgcattattaggtttgcaattatttaacctaacaaatttcatc 47503060  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  47503059 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 47503019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 344 - 443
Target Start/End: Complemental strand, 38887478 - 38887377
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| ||||||||||||||||||| || ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||    
T  38887478 catatccttatttattaattttgttaggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaa 38887379  T
Q  442 tt 443  Q
    ||    
T  38887378 tt 38887377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 18094956 - 18095056
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||||| | || |||||||||||||||||||||| |||||||| |||||||||||||    
T  18094956 ttatttattaattttgttaggtctgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcaatgatttaacctaacaaattccatc 18095055  T
Q  449 t 449  Q
    |    
T  18095056 t 18095056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 347 - 492
Target Start/End: Complemental strand, 53047697 - 53047554
Alignment:
Q  347 atctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    ||||||||||||||||||||||| || ||||  |||||||| ||||||||||| | || |||||||| |||||||||||||||||||||| ||||||||     
T  53047697 atctttatttattaattttgttaggtctgcagcaatttaacataattttttcccgctcatttgctttgttaggtttgcaattatttaacctaacaaattt 53047598  T
Q  445 catctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||| |          |||||||||||||||||||||||||||||||||    
T  53047597 cattt----aaaaaatgcatcgcaccaatttcatttctatcctcttgc 53047554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 351 - 539
Target Start/End: Original strand, 11454205 - 11454392
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||| | || | | ||||||| ||||||||||||||||||| |||||||| ||||    
T  11454205 ttatttattaattttgttatgtctgcaacaatttaacctaattttttcccgctcatctactttatttggtttgcaattatttaacctaacaaatttcatc 11454304  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgcgnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
    |          ||||||||||||||||||||  |||||| ||||          |||||||||||||||||| ||||||||||||||||||    
T  11454305 t---aaaaaaatgcatcgcaccaatttcattcatatccttttgcctttttttttaagaaaatattttctacacttatccttatttattaat 11454392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 355 - 448
Target Start/End: Original strand, 37760501 - 37760596
Alignment:
Q  355 ttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||| | || ||||||||||||||||||||||||||||||| |||||||| ||||    
T  37760501 ttattaattttgttacgtctgcaacaatttaacctaaatttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 37760596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 353 - 525
Target Start/End: Original strand, 43017273 - 43017445
Alignment:
Q  353 atttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctn 450  Q
    |||||||||||||||||||| ||||  |||||||||||||||||||| | || |||||||||||| |||||||||||||||||| |||||||| |||||     
T  43017273 atttattaattttgttacgtctgcagcaatttaacctaattttttcccgctcatttgctttattaagtttgcaattatttaacctaacaaatttcatct- 43017371  T
Q  451 nnnnnnnnntgcatcgcaccaatttcatttctatcctcttgcgnnnnnnnngaagaaaatattttctacatttat 525  Q
             ||||| ||||||||||| || ||||||||||||         ||||||||||||||||||||||||    
T  43017372 -aaaaaaaatgcattgcaccaatttcgttcctatcctcttgccttttttttgaagaaaatattttctacatttat 43017445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 11453937 - 11454038
Alignment:
Q  351 ttatttattaattttgttacgttgcaaa-aatttaacctaattttttcc--gttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    |||||||||||||||||||||||  ||| ||||||| |||||||||| |  |||| ||||||||||||||||||||||||||||||| |||||||| |||    
T  11453937 ttatttattaattttgttacgtttgaaataatttaatctaatttttttctcgttcatttgctttattaggtttgcaattatttaacctaacaaattacat 11454036  T
Q  448 ct 449  Q
    ||    
T  11454037 ct 11454038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 11454557 - 11454663
Alignment:
Q  346 tatctttatttattaatttt-gttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||| ||||||||||||||| ||||||| ||||  |||||||||||||||||||| | || |||||||||||||||||||||| |||||||| |||||||    
T  11454557 tatccttatttattaatttttgttacgtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaatcatttaacctaacaaat 11454656  T
Q  443 tccatct 449  Q
    |||||||    
T  11454657 tccatct 11454663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 492
Target Start/End: Original strand, 35560098 - 35560242
Alignment:
Q  348 tctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    ||||||||||||||||||||||| | ||||  ||||||||||||||||||  ||  || ||||||||||||||||||||||||||||||| ||||||||     
T  35560098 tctttatttattaattttgttacttctgcagcaatttaacctaattttttttcctctcatttgctttattaggtttgcaattatttaacctaacaaattt 35560197  T
Q  445 catctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||||           |||||||||||||||||||| ||||||||||||    
T  35560198 catc---caaaaaaatgcatcgcaccaatttcattcctatcctcttgc 35560242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 445
Target Start/End: Complemental strand, 38887693 - 38887588
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt---ccgttcttttgctttattaggtttgcaattatttaaccaaaca 439  Q
    |||||| ||||||||||||||| ||| || ||||  ||||||||||||||||||   ||| || ||||||||||||||||||||||||||||||| ||||    
T  38887693 catatcattatttattaattttattaggtctgcagcaatttaacctaatttttttttccgctcatttgctttattaggtttgcaattatttaacctaaca 38887594  T
Q  440 aattcc 445  Q
    ||||||    
T  38887593 aattcc 38887588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 346 - 491
Target Start/End: Complemental strand, 47503338 - 47503193
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||| ||||||||||||||| |||||| | | | ||||||||||| ||||||  ||| || ||||||||||||||||||||||||||||||| |||||||    
T  47503338 tatccttatttattaattttattacgtctacgacaatttaacctattttttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaat 47503239  T
Q  443 tccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
    | |||||          |||||||||||||||||||| |||||||||||    
T  47503238 ttcatct---aaaaaaatgcatcgcaccaatttcattcctatcctcttg 47503193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 11522526 - 11522632
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||||||||||||||| || | ||| |||||||||||||||||| | |||| |||| |||||||||||| ||||| ||||||| |||||||    
T  11522526 atatccttatttattaattttgttaggtctacaacaatttaacctaatttttttcagttcatttgttttattaggtttacaattgtttaacctaacaaat 11522625  T
Q  443 tccatct 449  Q
    | |||||    
T  11522626 ttcatct 11522632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 447
Target Start/End: Original strand, 18094741 - 18094839
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    ||||||||||||||||||| || ||||  |||||||| ||||||||||| | |  ||||||||||||||||||||||||||||||| ||||||| ||||    
T  18094741 ttatttattaattttgttaggtctgcagcaatttaacttaattttttcccgctaatttgctttattaggtttgcaattatttaacctaacaaatcccat 18094839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 24365736 - 24365834
Alignment:
Q  346 tatctttatttattaattttgttacgttgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||| ||||||||||||||||||||||      |||||||||||||||||||| | || |||| |||||||||||||||||||||||||| ||| ||||     
T  24365736 tatccttatttattaattttgttacgt------aatttaacctaattttttcccgctcatttgatttattaggtttgcaattatttaacctaacgaattt 24365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 45514529 - 45514425
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  ||||||| |||||||||| |||||| ||| |||||||| |||||||||||||||||| || |||||    
T  45514529 tatccttatttattaattttgttacgtctgcagcaatttaatctaattttttcccgttcatttactttatta-gtttgcaattatttaacctaataaatt 45514431  T
Q  444 ccatct 449  Q
     |||||    
T  45514430 tcatct 45514425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 20877322 - 20877182
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  ||||||| |||||||||||| | || ||| ||||||||||||||   |||||||||| |||||||| ||||    
T  20877322 ttatttattaattttgttacgtctgcagcaatttaatctaattttttccctctcatttactttattaggtttgtcgttatttaacctaacaaatttcatc 20877223  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  20877222 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 20877182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 444
Target Start/End: Original strand, 40050845 - 40050945
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||| |||||||||  | ||||  |||||||||||||||||||| | || |||||||||||||||||||||| |||||||| ||||||||    
T  40050845 tatccttatttatttattttgttagttctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaataatttaacctaacaaatt 40050944  T
Q  444 c 444  Q
    |    
T  40050945 c 40050945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 38887901 - 38887806
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    ||||||||||||||| | | || ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||  |||||||||    
T  38887901 ttatttattaattttatcaggtctgcagtaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacgtaacaaattc 38887806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 441
Target Start/End: Original strand, 11454376 - 11454475
Alignment:
Q  346 tatctttatttattaattttgtt---acgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||| ||||||||||||||||||   |||| ||||  |||||| |||||||||||| | || |||||||||||||| |||||||||||||||| ||||||    
T  11454376 tatccttatttattaattttgttgttacgtctgcagcaatttatcctaattttttctgctcatttgctttattaggcttgcaattatttaacctaacaaa 11454475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 449
Target Start/End: Complemental strand, 16015328 - 16015256
Alignment:
Q  378 aaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||||||||| | || ||||||||||||||||  ||||||||||||| ||||||||| ||||    
T  16015328 aaatttaacctaattttttcccgctcatttgctttattaggttaacaattatttaacctaacaaattctatct 16015256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 47519955 - 47520026
Alignment:
Q  379 aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||||| | || |||||||||||||| |||||||||||||||| ||| || |||||||    
T  47519955 aatttaacctaattttttcccgctcatttgctttattagggttgcaattatttaacctaaccaagtccatct 47520026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 51654074 - 51654138
Alignment:
Q  380 atttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    ||||||||||||||||||| | || |||| |||||||||||| ||||||||||||| ||||||||    
T  51654074 atttaacctaattttttcccgctcatttgttttattaggtttacaattatttaacctaacaaatt 51654138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 490
Target Start/End: Original strand, 46451338 - 46451422
Alignment:
Q  404 tttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctctt 490  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||          |||||||||||||||||||| ||||||||||    
T  46451338 tttgctttattagatttgcaattatttaacctaacaaatttcatct--aaaaaaaatgcatcgcaccaatttcattcctatcctctt 46451422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 441
Target Start/End: Original strand, 54274786 - 54274824
Alignment:
Q  403 ttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  54274786 ttttgctttattaggtttgcaattatttaacctaacaaa 54274824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 11454536 - 11454573
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11454536 gaagaaaatattttctacacttatccttatttattaat 11454573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 46451226 - 46451263
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  46451226 gaagaaaatattttctacacttatccttatttattaat 46451263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 47519956 - 47519875
Alignment:
Q  355 ttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaacc 434  Q
    |||||||||||||||  || |||  |||||||||||||||||||| | || |||||||||||| ||||| ||||||||||||    
T  47519956 ttattaattttgttagttttgcagcaatttaacctaattttttcccgctcatttgctttattaagtttgtaattatttaacc 47519875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 46451247 - 46451299
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc 397  Q
    |||| |||||||||||||||||||||| | ||| |||||||||||||||||||    
T  46451247 tatccttatttattaattttgttacgtctccaacaatttaacctaattttttc 46451299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 46451078 - 46451175
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||| ||||| ||||| |||||||  ||||||||| ||| || ||| |||||    |||||||||||||||||| ||||||||| |||    
T  46451078 ttatttattaattttgatacgtctgcaacaatttaaattaatttttttccgctcatttcctttaa---gtttgcaattatttaacctaacaaattctatc 46451174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 46451445 - 46451481
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||| | ||||||||||||||||||    
T  46451445 aagaaaatattttctatacttatccttatttattaat 46451481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 41995864 - 41995759
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||||||||||||||||||||||| || || || |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  41995864 tatctttatttattaattttgttatgtctgaaacaatttaacctaattttttcctgttcatttgctttattaggtttgcaattatttaacctaacaaatt 41995765  T
Q  444 ccatct 449  Q
    ||||||    
T  41995764 ccatct 41995759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 344 - 492
Target Start/End: Complemental strand, 28612346 - 28612199
Alignment:
Q  344 catatctttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| |||||||||||||||||||  || |||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||    
T  28612346 catatccttatttattaattttgttagttttgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaa 28612247  T
Q  442 ttccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||          |||||||||||||||||||| ||||||||||||    
T  28612246 ttccatct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 28612199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 344 - 449
Target Start/End: Complemental strand, 28611921 - 28611814
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| ||||||||||||||||||| || ||||  |||||||||||||||||||| | || ||||||| ||||||||||||||||||||||| |||||     
T  28611921 catatccttatttattaattttgttaggtctgcagcaatttaacctaattttttcccgctcatttgcttgattaggtttgcaattatttaacctaacaag 28611822  T
Q  442 ttccatct 449  Q
    ||||||||    
T  28611821 ttccatct 28611814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 492
Target Start/End: Complemental strand, 28612558 - 28612412
Alignment:
Q  344 catatctttatttattaattttgttacgttgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||||| ||||||||||||||||||| | ||||| |||||||||||||||||||| | || ||| |||||||||||||||||||| |||||| || ||||    
T  28612558 catatccttatttattaattttgttaggctgcaacaatttaacctaattttttccagctcattttctttattaggtttgcaattacttaacctaaaaaat 28612459  T
Q  443 tccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |  ||||          |||||||||||||||||||| ||||||||||||    
T  28612458 tttatct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 28612412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 449
Target Start/End: Complemental strand, 28612768 - 28612663
Alignment:
Q  344 catatctttatttattaattttgttacgttgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||||| ||||||||||||||||||| | ||||| ||||||||||||| |||||| | || || |||||||||||||||||||||||||||| |||||||    
T  28612768 catatccttatttattaattttgttaggctgcaacaatttaacctaatcttttcccgctcatt-gctttattaggtttgcaattatttaacctaacaaat 28612670  T
Q  443 tccatct 449  Q
    | |||||    
T  28612669 ttcatct 28612663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 492
Target Start/End: Original strand, 44256467 - 44256613
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||||||||||||||||||||||| || ||||  |||||||||||||||||| ||| || ||| ||||||||||||| ||| ||||||||| || ||||    
T  44256467 atatctttatttattaattttgttaggtctgcagcaatttaacctaattttttcccgctcattttctttattaggttttcaagtatttaacctaataaat 44256566  T
Q  443 tccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    | |||||          |||||||||||||||||||||||||||||||||    
T  44256567 ttcatct---aaaaaaatgcatcgcaccaatttcatttctatcctcttgc 44256613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 11735905 - 11736009
Alignment:
Q  346 tatctttatttattaattttgttacgttgcaaaaatttaacctaat-tttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||| ||||||||||||||||||| ||||||  ||||||||||||| |||| ||| || ||||||| || |||||||||||||||||||| ||||||||     
T  11735905 tatccttatttattaattttgttaggttgcagcaatttaacctaatattttcccgctcatttgcttcataaggtttgcaattatttaacctaacaaattt 11736004  T
Q  445 catct 449  Q
    |||||    
T  11736005 catct 11736009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 353 - 545
Target Start/End: Original strand, 29549960 - 29550150
Alignment:
Q  353 atttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctn 450  Q
    ||||||||||||||||| || ||||  ||||||||||||||||||| ||||| ||||||||||||||||||  ||||||||||| ||||||||| || |     
T  29549960 atttattaattttgttaggtctgcactaatttaacctaattttttctcgttcatttgctttattaggtttgttattatttaacctaacaaattctattt- 29550058  T
Q  451 nnnnnnnnntgcatcgcaccaatttcatttctatcctcttgcgnnnnnnnngaagaaaatattttctacatttatccttatttattaatattatt 545  Q
             ||||||||||| |||||||| ||||| ||||||          ||| ||||||||||||||||||||||||||||||||| |||||    
T  29550059 --aaaaaaatgcatcgcaccgatttcattcctatcatcttgc-cttttttttaaggaaatattttctacatttatccttatttattaattttatt 29550150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 539
Target Start/End: Complemental strand, 5001776 - 5001616
Alignment:
Q  379 aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttca 477  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||| |||||          ||||||||||||||||||    
T  5001776 aatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct---aaaaaaatgcatcgcaccaatttca 5001680  T
Q  478 tttctatcctcttgc--gnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
    || | ||||||||||           |||||||||||||| |||| ||||||||||||||||||    
T  5001679 ttccgatcctcttgccttttttttttgaagaaaatattttttacacttatccttatttattaat 5001616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 6348067 - 6348212
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  |||||||| |||||||||| || ||  ||||||||||||||||||||||||||||   ||||||||    
T  6348067 tatccttatttattaattttgttacgtctgcagcaatttaacataattttttctcgctcaattgctttattaggtttgcaattatttaatttaacaaatt 6348166  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
     |||||          |||||||||||||||||||||| ||||||||||    
T  6348167 tcatct---aaaaaaatgcatcgcaccaatttcatttcgatcctcttgc 6348212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 28612127 - 28612042
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaacc 434  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||| | || ||| |||||||||||||||||||||||||||    
T  28612127 ttatttattaattttgttaggtctgcaacaatttaacctaattttttccagctcattttctttattaggtttgcaattatttaacc 28612042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 28612975 - 28612874
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattagg-tttgcaattatttaaccaaacaaattccat 447  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||| ||||| |||| ||||||||| ||| ||||||||||| | ||||||||||||    
T  28612975 ttatttattaattttgttaggtctgcaacaatttaacctaattttttctcgttcatttgttttattaggtttttcaattatttaatctaacaaattccat 28612876  T
Q  448 ct 449  Q
    ||    
T  28612875 ct 28612874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 10129603 - 10129503
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  ||||||||||||||| ||| || || ||||||||||||||||||||||||||||||| || |||||| |||    
T  10129603 ttatttattaattttgttaggtctgcagcaatttaacctaatttgttctcgctcatttgctttattaggtttgcaattatttaacctaataaattctatc 10129504  T
Q  449 t 449  Q
    |    
T  10129503 t 10129503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 44543821 - 44543721
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||| || | || ||||||||||| ||||||||||||||||||| || |||||| |||    
T  44543821 ttatttattaattttgttacgtccgcaacaatttaacctaatttttccccgctcatttgctttatttggtttgcaattatttaacctaaaaaattctatc 44543722  T
Q  449 t 449  Q
    |    
T  44543721 t 44543721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 539
Target Start/End: Complemental strand, 5001632 - 5001439
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  ||||||| ||||||||||| ||||| ||||||||||||||||  || |||||||||| || |||||    
T  5001632 tatccttatttattaattttgttaggtctgcagcaatttaaactaattttttctcgttcatttgctttattaggttaacagttatttaacctaaaaaatt 5001533  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg-cgnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
     |||||          |||||||||||||||| ||| ||||||||||| |          |||||||||||||||||| ||||||||||||||||||    
T  5001532 tcatct---aaaaaaatgcatcgcaccaatttaattcctatcctcttgccttttgtttttaagaaaatattttctacacttatccttatttattaat 5001439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 440
Target Start/End: Original strand, 627532 - 627628
Alignment:
Q  346 tatctttatttattaattttgttacg-ttgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaa 440  Q
    |||| ||||||||||||||||||||| |||||  |||||||||||||||||| ||| || ||| ||||||||  ||||||||||||||||| |||||    
T  627532 tatccttatttattaattttgttacgtttgcagcaatttaacctaattttttcccgctcatttactttattacatttgcaattatttaacctaacaa 627628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 29550128 - 29550237
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattag----gtttgcaattatttaaccaaaca 439  Q
    |||| ||||||||||||||| ||| || ||||| |||||||||||||||||| ||| || |||||||||||||    |||||||||||||||||| ||||    
T  29550128 tatccttatttattaattttattaggtctgcaacaatttaacctaatttttttccgctcatttgctttattagctaggtttgcaattatttaacctaaca 29550227  T
Q  440 aattccatct 449  Q
    ||||| ||||    
T  29550228 aattcaatct 29550237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 5013301 - 5013219
Alignment:
Q  352 tatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaa 432  Q
    ||||||||||||||||||||| ||||  |||||||||||| ||||||| | || ||||||||||||||||| |||||||||||    
T  5013301 tatttattaattttgttacgtctgcagcaatttaacctaaatttttcccgctcatttgctttattaggtttacaattatttaa 5013219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 447
Target Start/End: Complemental strand, 12896532 - 12896434
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaat-tttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    ||||||||||||||||||| || | ||| |||||||| |||| |||||||| || |||| |||||||||||||||||||||||| | || |||||||||    
T  12896532 ttatttattaattttgttatgtctacaacaatttaacttaatctttttccgctcatttgttttattaggtttgcaattatttaatctaataaattccat 12896434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 44544038 - 44543932
Alignment:
Q  345 atatctttatttattaattttgttacgtt-gcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||||||||||||||||||  |||| |||||||| |||||||||||   || ||||| |||||| ||||| |||||||||||| || ||||    
T  44544038 atatccttatttattaattttgttacgtccgcaacaatttaacataattttttcccactcatttgcattattaagtttgtaattatttaacctaataaat 44543939  T
Q  443 tccatct 449  Q
    |||||||    
T  44543938 tccatct 44543932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 12898023 - 12898123
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaat-tttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||  | ||||  |||||||||| || |||||||| || ||| |||| |||||||||||||||||||| | |||||||||||||    
T  12898023 ttatttattaattttgttagatctgcagcaatttaacctgatatttttccgctcatttactttgttaggtttgcaattatttaatctaacaaattccatc 12898122  T
Q  449 t 449  Q
    |    
T  12898123 t 12898123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 492
Target Start/End: Original strand, 11736330 - 11736441
Alignment:
Q  379 aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttca 477  Q
    ||||||||||||| |||||| | || ||||||| || |||||||||||||||||||| |||||||| |||||          ||||||||||||||||||    
T  11736330 aatttaacctaatattttcccgctcatttgcttcataaggtttgcaattatttaacctaacaaatttcatct---aaaaaaatgcatcgcaccaatttca 11736426  T
Q  478 tttctatcctcttgc 492  Q
    |||||||| ||||||    
T  11736427 tttctatcatcttgc 11736441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 539
Target Start/End: Original strand, 29549833 - 29549969
Alignment:
Q  391 ttttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctctt 490  Q
    ||||||||| || ||||||||||||||||| ||||||||||||| || ||||| |||||          |||| ||||||||||||||| ||||||||||    
T  29549833 ttttttccgctcatttgctttattaggtttacaattatttaacctaataaatttcatct---aaaaaaatgcaccgcaccaatttcattcctatcctctt 29549929  T
Q  491 gcgnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
               ||||||||||||||||||||||||||| ||||||||||    
T  29549930 ---------ttgaagaaaatattttctacatttatcctcatttattaat 29549969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 492
Target Start/End: Complemental strand, 5001442 - 5001340
Alignment:
Q  388 taattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcc 486  Q
    |||||||||| || || ||||||||||||||||||||||||||||||| || || ||||||||          |||||||||||||||||||| ||||||    
T  5001442 taattttttctcgctcatttgctttattaggtttgcaattatttaacctaaaaagttccatct---aaaaaaatgcatcgcaccaatttcattcctatcc 5001346  T
Q  487 tcttgc 492  Q
    ||||||    
T  5001345 tcttgc 5001340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 492
Target Start/End: Complemental strand, 5013112 - 5013010
Alignment:
Q  388 taattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcc 486  Q
    |||||||||| || || ||||||||||||||||||||||||||||||| || || ||||||||          |||||||||||||||||||| ||||||    
T  5013112 taattttttctcgctcatttgctttattaggtttgcaattatttaacctaaaaagttccatct---aaaaaaatgcatcgcaccaatttcattcctatcc 5013016  T
Q  487 tcttgc 492  Q
    ||||||    
T  5013015 tcttgc 5013010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 3249905 - 3249805
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaat-tttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||  | ||||| ||||||||||||| |||||||| |  |||||| ||||||||| ||| | |||||||| |||||||| ||||    
T  3249905 ttatttattaattttgttagatctgcaacaatttaacctaatatttttccgcttatttgctgtattaggttagcagtaatttaacctaacaaatttcatc 3249806  T
Q  449 t 449  Q
    |    
T  3249805 t 3249805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 37131593 - 37131494
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||  | ||||  |||||||||||||||||| ||  || ||||||||||||| ||||||||||||||||  |||||||| ||||    
T  37131593 ttatttattaattttgttagatctgcagcaatttaacctaatttttttccactcatttgctttattag-tttgcaattatttaacttaacaaatttcatc 37131495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 491
Target Start/End: Original strand, 41326372 - 41326508
Alignment:
Q  354 tttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnn 451  Q
    |||||||||||||||| || ||||| |||||||| |||||||| || | || |||| ||||||| |||||||||||||||||| || ||||   ||||      
T  41326372 tttattaattttgttaggtctgcaacaatttaacttaatttttccccgctcatttgttttattaagtttgcaattatttaacctaataaatcttatct-- 41326469  T
Q  452 nnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
            ||||||||||||||||||||||||||||||||    
T  41326470 -aaaaaaatgcatcgcaccaatttcatttctatcctcttg 41326508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 6348046 - 6348083
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  6348046 gaagaaaatattttctatatttatccttatttattaat 6348083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 44543635 - 44543598
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  44543635 gaagaaaatattttctacacttatccttatttattaat 44543598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 5001324 - 5001288
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5001324 aagaaaatattttctacacttatccttatttattaat 5001288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 5013145 - 5013109
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5013145 aagaaaatattttctacacttatccttatttattaat 5013109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 449
Target Start/End: Original strand, 19640349 - 19640407
Alignment:
Q  391 ttttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||| ||||| |||  |||||| ||||||||||||||||||| || |||||||||||    
T  19640349 tttttttcgttcatttattttattgggtttgcaattatttaacctaataaattccatct 19640407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 449
Target Start/End: Original strand, 19838942 - 19839000
Alignment:
Q  391 ttttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||| ||||| |||  |||||| ||||||||||||||||||| || |||||||||||    
T  19838942 tttttttcgttcatttattttattgggtttgcaattatttaacctaataaattccatct 19839000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 627635 - 627676
Alignment:
Q  408 ctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||| |||||||||||||||||| |||||||| |||||    
T  627635 ctttattacgtttgcaattatttaacctaacaaatttcatct 627676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Original strand, 41326706 - 41326735
Alignment:
Q  463 atcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||||||||||||||||||||||||    
T  41326706 atcgcaccaatttcatttctatcctcttgc 41326735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 44543847 - 44543810
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  44543847 gaagaaaatattttctacacttaaccttatttattaat 44543810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 44263089 - 44263229
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  44263089 ttatttattaattttgttaagtctgcagcaatttaacctaattttttcccgttcatttgctttattaggtttgcaattatttaacctaacaaattccatc 44263188  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  44263189 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 44263229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 51113901 - 51114006
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||    
T  51113901 tatccttatttattaattttgttacgtctgcagcaatttaacctaattttttcccgttcatttactttattaggtttgcaattatttaacctaacaaatt 51114000  T
Q  444 ccatct 449  Q
    ||||||    
T  51114001 ccatct 51114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 318555 - 318695
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  ||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||    
T  318555 ttatttattaattttgttacgtctgcagcaatttaatctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatc 318654  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  318655 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 318695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 38684015 - 38684155
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| ||| |||  |||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||| |||||||||||||    
T  38684015 ttatttattaattttgttaggtttgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcgattatttaacctaacaaattccatc 38684114  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||||||||||||||||    
T  38684115 t---aaaaaaatgcatcgcaccaatttcatttctatcctcttgc 38684155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 3227334 - 3227229
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    ||||| |||||||||||||||||||  | ||||  |||||||||||||||||| || || ||||||||||||||||||||||||||||||| ||||||||    
T  3227334 atatccttatttattaattttgttagatctgcatcaatttaacctaatttttttcgctcatttgctttattaggtttgcaattatttaacctaacaaatt 3227235  T
Q  444 ccatct 449  Q
    ||||||    
T  3227234 ccatct 3227229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 27296332 - 27296437
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||||||||||| || || ||| ||||||||||||||||||||||||||| ||||||||    
T  27296332 tatccttatttattaattttgttacgtctgcaacaatttaacctaattttttctcgctcattttctttattaggtttgcaattatttaacctaacaaatt 27296431  T
Q  444 ccatct 449  Q
     |||||    
T  27296432 tcatct 27296437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 42492276 - 42492130
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  ||||||||||||||||||||   || ||||||||||||||||||||||||||||||| ||||||||    
T  42492276 tatccttatttattaattttgttaggtctgcagcaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaatt 42492177  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||          |||||||||||||||||||| ||||||||||||    
T  42492176 ccatct--aaaaaaaatgcatcgcaccaatttcattcctatcctcttgc 42492130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 51114085 - 51114190
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| || |  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||    
T  51114085 tatccttatttattaattttgttacgtctgtagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 51114184  T
Q  444 ccatct 449  Q
    ||||||    
T  51114185 ccatct 51114190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 347 - 492
Target Start/End: Original strand, 21617752 - 21617896
Alignment:
Q  347 atctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    ||||||||| ||||||||||||| || ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||     
T  21617752 atctttattcattaattttgttaggtctgcattaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattt 21617851  T
Q  445 catctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||          |||||||||| ||||||||||||||||||||||    
T  21617852 catct---aaaaaaatgcatcgcactaatttcatttctatcctcttgc 21617896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 44262658 - 44262764
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||||||||||||||||||||||| || ||||  |||||||||||||||||| ||  || |||||||||||| |||||||||||||||||| |||||||    
T  44262658 atatctttatttattaattttgttaggtctgcagcaatttaacctaatttttttccactcatttgctttattacgtttgcaattatttaacctaacaaat 44262757  T
Q  443 tccatct 449  Q
    |||||||    
T  44262758 tccatct 44262764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 5428523 - 5428628
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||    
T  5428523 tatccttatttattaattttgttaggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 5428622  T
Q  444 ccatct 449  Q
     |||||    
T  5428623 tcatct 5428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 345 - 491
Target Start/End: Complemental strand, 16165798 - 16165652
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||||||||||||||| || || |  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||    
T  16165798 atatccttatttattaattttgttaggtctgtagcaatttaacctaattttttcccgatcatttgctttattaggtttgcaattatttaacctaacaaat 16165699  T
Q  443 tccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
    | |||||          |||||||||||||||||||| |||||||||||    
T  16165698 ttcatct--aaaaaaaatgcatcgcaccaatttcattcctatcctcttg 16165652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 1156171 - 1156071
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||| ||||||||  ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||    
T  1156171 ttatttattaatattgttacggctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatc 1156072  T
Q  449 t 449  Q
    |    
T  1156071 t 1156071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 27296162 - 27296262
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| || | |  ||||||||||||||||||||||||||||||| || ||||||||||    
T  27296162 ttatttattaattttgttacgtctgcaacaatttaacctaatttttccccgcttatttgctttattaggtttgcaattatttaacctaataaattccatc 27296261  T
Q  449 t 449  Q
    |    
T  27296262 t 27296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 51113723 - 51113823
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||| |||||||| ||||    
T  51113723 ttatttattaattttgttacgtttgcagcaatttaacctaatttttttccgctcatttgctttattagatttgcaattatttaacctaacaaatttcatc 51113822  T
Q  449 t 449  Q
    |    
T  51113823 t 51113823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 539
Target Start/End: Complemental strand, 42497397 - 42497206
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||| || || ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||| ||||    
T  42497397 ttatttattaattttgataggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 42497298  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc--gnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
    |          ||||| |||||||||||||| ||||||||||||           ||||||||||||||||||| || |||||||||||||||    
T  42497297 t-gaaaaaaaatgcattgcaccaatttcattcctatcctcttgctttttttttgtgaagaaaatattttctacacttctccttatttattaat 42497206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 42497039 - 42496939
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||||| | || |||| |||||||| ||||||||||||||||| |||||||||||||    
T  42497039 ttatttattaattttgttaggtctgcagcaatttaacctaattttttcccgctcatttgttttattagatttgcaattatttaacctaacaaattccatc 42496940  T
Q  449 t 449  Q
    |    
T  42496939 t 42496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 448
Target Start/End: Complemental strand, 51272598 - 51272499
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || | ||| |||||||||||||||||| | | || ||||||||||||||||||||||||||||||| || ||||||||||    
T  51272598 ttatttattaattttgttaggtctacaacaatttaacctaatttttttctgctcatttgctttattaggtttgcaattatttaacctaataaattccatc 51272499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 346 - 426
Target Start/End: Complemental strand, 28950098 - 28950016
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaatt 426  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||||||||| ||| || |||||||||||||||||||||||    
T  28950098 tatccttatttattaattttgttacgtctgcaacaatttaacctaatttttttccgctcatttgctttattaggtttgcaatt 28950016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 355 - 449
Target Start/End: Complemental strand, 6537757 - 6537661
Alignment:
Q  355 ttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||| ||  |||| |||||||| ||||||||||| | || ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  6537757 ttattaattttgttaggtcagcaacaatttaacttaattttttcccgctcatttactttattaggtttgcaattatttaacctaacaaattccatct 6537661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 346 - 448
Target Start/End: Original strand, 44263305 - 44263409
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  ||| ||||||||||||||| || || ||||| ||||||||||||||||||||||||| ||||||||    
T  44263305 tatccttatttattaattttgttaggtctgcatcaatataacctaattttttctcgctcatttgccttattaggtttgcaattatttaacctaacaaatt 44263404  T
Q  444 ccatc 448  Q
     ||||    
T  44263405 acatc 44263409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 52740700 - 52740841
Alignment:
Q  351 ttatttattaattttgttacgttgcaaa-aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| |||  ||  |||||||||||||||||||| | || ||||||||||||||||| ||||||||||||  ||||||||| |||    
T  52740700 ttatttattaattttgttaggtttgaagcaatttaacctaattttttcccgctcatttgctttattaggtttacaattatttaacttaacaaattcaatc 52740799  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  52740800 t--aaaaaaaatgcatcgcaccaatttcattcctatcctcttgc 52740841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 33375630 - 33375721
Alignment:
Q  351 ttatttattaattttgttacgttgcaaa-aatttaacctaattttt-tccgttcttttgctttattaggtttgcaattatttaaccaaacaa 440  Q
    ||||||||||||||||||||||  |||  ||||||||||||||||| |||| || ||| ||||||||||||||||||||||||||| |||||    
T  33375630 ttatttattaattttgttacgtctcaagcaatttaacctaatttttctccgctcatttactttattaggtttgcaattatttaacctaacaa 33375721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 1647538 - 1647643
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaa-ttttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  | |||||||||| ||||||| | || |||||||||||||||||| |||||||||||| ||||||||    
T  1647538 tatccttatttattaattttgttaggtctgcagcagtttaacctaagttttttctgctcatttgctttattaggtttggaattatttaacctaacaaatt 1647637  T
Q  444 ccatct 449  Q
     |||||    
T  1647638 tcatct 1647643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 5428928 - 5429033
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||  | ||||  ||||||| |||||||||| ||| || | ||||||||||||||||||||||||||| | ||||||||    
T  5428928 tatccttatttattaattttgttagatctgcagcaatttaaactaatttttttccgctcatctgctttattaggtttgcaattatttaagctaacaaatt 5429027  T
Q  444 ccatct 449  Q
    ||||||    
T  5429028 ccatct 5429033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 28950365 - 28950280
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaacc 434  Q
    |||||||||||||||||||||| | ||  |||||||||||||||||||| | |  |||||||||||||||||||||||||||||||    
T  28950365 ttatttattaattttgttacgtctccagcaatttaacctaattttttcccgctaatttgctttattaggtttgcaattatttaacc 28950280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 28949995 - 28949904
Alignment:
Q  353 atttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||||||||||||||||||| || |   |||||||||||||||| |||  | |||||||||||||||||| |||||||||||| ||||||||    
T  28949995 atttattaattttgttacgtctgaagctatttaacctaatttttcccgcacatttgctttattaggtttgtaattatttaacctaacaaatt 28949904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 28950274 - 28950176
Alignment:
Q  353 atttattaattttgttacgtt-gcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||| |||  | ||||||||||||| |||| |||||||||||| |||||||| |||||    
T  28950274 atttattaattttgttacgtccgcaacaatttaacttaatttttttccgcacatttgctttattagatttgaaattatttaacctaacaaatttcatct 28950176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 5429108 - 5429152
Alignment:
Q  405 ttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  5429108 ttgctttattaggtttgcaattatttaacctaacaaattccatct 5429152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 30083972 - 30084079
Alignment:
Q  345 atatctttatttattaattttgttacgtt-gcaaaaatttaacctaattt--tttccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    ||||| ||||||||||||||||||| ||  |||  ||||||| |||||||  |||||| |  |||||||||||||||||| ||||||||||||| | |||    
T  30083972 atatccttatttattaattttgttaggtccgcagcaatttaatctaatttcttttccgcttatttgctttattaggtttgaaattatttaaccatataaa 30084071  T
Q  442 ttccatct 449  Q
    ||||||||    
T  30084072 ttccatct 30084079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 443
Target Start/End: Complemental strand, 4100691 - 4100597
Alignment:
Q  352 tatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||||||||||||||||| || ||||  ||||||||||||||||||  ||| || |||| ||||||| |||||||||||||||||  ||||||||    
T  4100691 tatttattaattttgttaggtctgcagtaatttaacctaatttttttcccgctcatttgttttattaagtttgcaattatttaacttaacaaatt 4100597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 44099747 - 44099676
Alignment:
Q  379 aatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||||||  || || ||||||||||||||||||||||||||||||| || ||||| |||||    
T  44099747 aatttaacctaattttttttcgctcatttgctttattaggtttgcaattatttaacctaataaatttcatct 44099676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 18912327 - 18912428
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaa-ttttttccgttcttttgctttattaggtttg-caattatttaaccaaacaaattccat 447  Q
    ||||||||||||||||||| || ||||  |||||||||||| |||||||||  | ||||||||||||||||||  |||||||||||  |||||||| |||    
T  18912327 ttatttattaattttgttatgtctgcagcaatttaacctaatttttttccgcccatttgctttattaggtttgtaaattatttaacttaacaaatttcat 18912426  T
Q  448 ct 449  Q
    ||    
T  18912427 ct 18912428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 539
Target Start/End: Original strand, 24595087 - 24595246
Alignment:
Q  379 aatttaacctaattttttc-cgttcttttgctttattaggtttgcaattat--ttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaattt 475  Q
    ||||||||||||||||||| || |   || |||||||||||||||||||||  |||||| |||||||| |||||          ||||||||||||||||    
T  24595087 aatttaacctaattttttctcgcttacttactttattaggtttgcaattatatttaacctaacaaatttcatctaacaaaa---tgcatcgcaccaattt 24595183  T
Q  476 catttctatcctcttgcgnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||          ||||||||||||| |||| ||||||||||||||||||    
T  24595184 catttctatcctcttgc-cttttttttaagaaaatattttttacacttatccttatttattaat 24595246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 51114064 - 51114101
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51114064 gaagaaaatattttctacatttatccttatttattaat 51114101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 42497217 - 42497117
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgtt-cttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||  | | ||| |||||||||||||||||||  |  | ||||||||||||||||| ||||||||||||  || ||||||||||    
T  42497217 ttatttattaattttgttagatctacaacaatttaacctaattttttcgctcacatttgctttattaggtttacaattatttaacataataaattccatc 42497118  T
Q  449 t 449  Q
    |    
T  42497117 t 42497117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 443
Target Start/End: Complemental strand, 45417651 - 45417612
Alignment:
Q  404 tttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  45417651 tttgctttattaggtttgcaattatttaacctaacaaatt 45417612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 449
Target Start/End: Original strand, 18912214 - 18912316
Alignment:
Q  350 tttatttattaattttgttacgt-tgcaaaaatttaacctaa-ttttttccgttcttttgctttattaggtttg-caattatttaaccaaacaaattcca 446  Q
    |||||||||||||||||||| || ||||  ||||||| |||| ||||||||| || ||| ||||||||||||||  |||||||||||  |||||||| ||    
T  18912214 tttatttattaattttgttatgtctgcagcaatttaatctaatttttttccgctcatttactttattaggtttgtaaattatttaacttaacaaatttca 18912313  T
Q  447 tct 449  Q
    |||    
T  18912314 tct 18912316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 12115360 - 12115405
Alignment:
Q  404 tttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||    
T  12115360 tttgctttattaggtttggaattatttaacctaacaaatttcatct 12115405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 434
Target Start/End: Original strand, 24595230 - 24595313
Alignment:
Q  346 tatctttatttattaattttgttacgttgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaacc 434  Q
    |||| |||||||||||||||||||   |||||   |||||| | ||||||||| | || |||||||||||||||||||||||||||||||    
T  24595230 tatccttatttattaattttgtta---tgcaa---tttaacttcattttttcctgctcatttgctttattaggtttgcaattatttaacc 24595313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 28950119 - 28950082
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  28950119 gaagaaaatattttctacacttatccttatttattaat 28950082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 51113880 - 51113917
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  51113880 gaagaaaatattttctacacttatccttatttattaat 51113917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 492
Target Start/End: Complemental strand, 4100890 - 4100758
Alignment:
Q  359 taattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnn 456  Q
    ||||||||||| || ||||  ||||||| |||||||||| ||| || || | |||||||| ||||||||||||||||| || ||||| |||||           
T  4100890 taattttgttaggtctgcagcaatttaatctaatttttttccgctcattagttttattagatttgcaattatttaacctaaaaaatttcatctaaaaaaa 4100791  T
Q  457 nnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
       || ||||||||||||||||||||||||||||||    
T  4100790 ---tggatcgcaccaatttcatttctatcctcttgc 4100758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 6537543 - 6537465
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggttt 420  Q
    |||||| ||||||||||||||||||| || || || |||||||| ||||||||| ||  || |||||||||||||||||    
T  6537543 catatccttatttattaattttgttaggtctgtaacaatttaacttaattttttcccactcatttgctttattaggttt 6537465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 443
Target Start/End: Complemental strand, 42497574 - 42497480
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    ||||||||||||||||||| || ||||  |||||||| |||||||||  || || |||  ||||||||||||| |||||||||||  ||||||||    
T  42497574 ttatttattaattttgttaggtctgcagtaatttaacttaattttttttcgctcatttattttattaggtttgtaattatttaacttaacaaatt 42497480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 42492361 - 42492324
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||| || ||||||||||||||||||    
T  42492361 gaagaaaatattttctgcacttatccttatttattaat 42492324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Complemental strand, 45417381 - 45417352
Alignment:
Q  463 atcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||||||||||||||||||||||||    
T  45417381 atcgcaccaatttcatttctatcctcttgc 45417352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 52584989 - 52585034
Alignment:
Q  404 tttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||| ||||| |||||||||||| |||||||| |||||    
T  52584989 tttgctttattaagtttgtaattatttaacctaacaaatttcatct 52585034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 492
Target Start/End: Original strand, 21618069 - 21618097
Alignment:
Q  464 tcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||||||||||||    
T  21618069 tcgcaccaatttcatttctatcctcttgc 21618097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 492
Target Start/End: Original strand, 21618274 - 21618302
Alignment:
Q  464 tcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||||||||||||    
T  21618274 tcgcaccaatttcatttctatcctcttgc 21618302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 24595321 - 24595353
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  24595321 tgcatcgcaccaatttcattcctatcctcttgc 24595353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 42497064 - 42497028
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||| |||| |||||||||||||    
T  42497064 aagaaaatattttctacaattatgcttatttattaat 42497028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 47790758 - 47790790
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  47790758 tgcatcgcaccaatttcattcctatcctcttgc 47790790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 23960911 - 23960806
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    ||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||  || |||||||||||||||||| |||||||||||| ||||||||    
T  23960911 atatctttatttaataattttgttacgtctgcagcaatttaacctaattttttccactcatttgctttattaggtttgtaattatttaacctaacaaatt 23960812  T
Q  444 ccatct 449  Q
    ||||||    
T  23960811 ccatct 23960806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 23828233 - 23828133
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||    
T  23828233 ttatttattaattttgttaggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatc 23828134  T
Q  449 t 449  Q
    |    
T  23828133 t 23828133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 23831051 - 23830951
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||| ||||    
T  23831051 ttatttattaattttgttaggtgtgcagaaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattgcatc 23830952  T
Q  449 t 449  Q
    |    
T  23830951 t 23830951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 37198409 - 37198304
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||||||||| ||| || ||||||||||| ||||| ||||| ||||||| ||||||||    
T  37198409 tatccttatttattaattttgttacgtctgcaacaatttaacctaatttttttccgctcatttgctttattcggttttcaattgtttaacctaacaaatt 37198310  T
Q  444 ccatct 449  Q
    ||||||    
T  37198309 ccatct 37198304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 23085860 - 23085960
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||||||| || ||||||||||    
T  23085860 ttatttattaattttgttaggtctgcaacaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaataaattccatc 23085959  T
Q  449 t 449  Q
    |    
T  23085960 t 23085960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 374 - 492
Target Start/End: Original strand, 38111368 - 38111484
Alignment:
Q  374 gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaa 472  Q
    |||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||          |||||||||||||    
T  38111368 gcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacccaacaaattccatct---gaaaaaatgcatcgcaccaa 38111464  T
Q  473 tttcatttctatcctcttgc 492  Q
    ||||||| ||||||||||||    
T  38111465 tttcattcctatcctcttgc 38111484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 351 - 491
Target Start/End: Original strand, 32062815 - 32062957
Alignment:
Q  351 ttatttattaattttgttacgttgc---aaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattcca 446  Q
    |||||||||||||||||||||||||   |  ||||||| |||||||||||| | || ||||||||||||||||||||||||||||||| |||||||| ||    
T  32062815 ttatttattaattttgttacgttgctgcagcaatttaaactaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttca 32062914  T
Q  447 tctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
    |||          ||||| ||||||||||||||||||||||||||    
T  32062915 tct--aaaaaaaatgcattgcaccaatttcatttctatcctcttg 32062957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 354 - 492
Target Start/End: Complemental strand, 27853773 - 27853636
Alignment:
Q  354 tttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnn 451  Q
    |||||||||||||||| || || |  |||||||||||||||||||| | || ||| ||||||||||||||||||||||||||| ||||||||||||||      
T  27853773 tttattaattttgttatgtctgtagcaatttaacctaattttttcccgctcatttactttattaggtttgcaattatttaacctaacaaattccatct-- 27853676  T
Q  452 nnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
            |||||||||||||||||||| ||||||||||||    
T  27853675 -aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 27853636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 37410178 - 37410078
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||| ||||||| |||  |||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||| ||||    
T  37410178 ttatttattaattttattacgtttgcagcaatttaacttaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 37410079  T
Q  449 t 449  Q
    |    
T  37410078 t 37410078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 491
Target Start/End: Complemental strand, 29580144 - 29580006
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||| | || |||| |||||||||||||||||||||||| | |||| ||| ||||    
T  29580144 ttatttattaattttgttacgtatgcatcaatttaacctaattttttcccgctcatttgttttattaggtttgcaattatttaaactaacacatttcatc 29580045  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
    |          |||||||||||||||||||| |||||||||||    
T  29580044 t----aaaaattgcatcgcaccaatttcattcctatcctcttg 29580006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 37198225 - 37198119
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||| |||||| ||||||||||||||| ||||  ||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||| || ||||    
T  37198225 tatcgttattttttaattttgttacgtctgcagcaatttaacctaattttttttccgctcatttgctttattaggtttgcaattatttaacctaataaat 37198126  T
Q  443 tccatct 449  Q
    || ||||    
T  37198125 tctatct 37198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 1197872 - 1197978
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||||||||||||||| || ||||  ||||||||||||| |||||| | || |||||||||||||| |||||||||||||||| |||||||    
T  1197872 atatccttatttattaattttgttaggtctgcagcaatttaacctaatcttttcccgctcatttgctttattagggttgcaattatttaacctaacaaat 1197971  T
Q  443 tccatct 449  Q
    | |||||    
T  1197972 ttcatct 1197978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 3459247 - 3459141
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||| |||||||||||||| ||||  |||||||| ||||||||||| | || ||||||||||||||||||||||||||||| | |||||||    
T  3459247 atatccttatttactaattttgttacgtctgcagcaatttaacataattttttcccgctcatttgctttattaggtttgcaattatttaatctaacaaat 3459148  T
Q  443 tccatct 449  Q
    | |||||    
T  3459147 ttcatct 3459141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 30439151 - 30439048
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt----ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattcc 445  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||||||    | |||| ||||||||||||||||||||||||||||||| |||||||| |    
T  30439151 ttatttattaattttgttaggtctgcaacaatttaatctaattttttttttctgttcatttgctttattaggtttgcaattatttaacctaacaaatttc 30439052  T
Q  446 atct 449  Q
    ||||    
T  30439051 atct 30439048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 39922192 - 39922094
Alignment:
Q  353 atttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||| |||||||||| ||||  |||||||| ||||||||||| | || |||| |||||||||||||||||||||||||| ||||||||||||||    
T  39922192 atttattaactttgttacgtctgcagcaatttaacttaattttttcccgctcatttgttttattaggtttgcaattatttaacctaacaaattccatct 39922094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 35617681 - 35617782
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaa-aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    |||||||||||||||||||||| |||||  |||||||| ||||||||||| | || |||| |||||||||||||||||||||||||| ||||||||| ||    
T  35617681 ttatttattaattttgttacgtctgcaagcaatttaacttaattttttcccgctcatttgttttattaggtttgcaattatttaacctaacaaattctat 35617780  T
Q  448 ct 449  Q
    ||    
T  35617781 ct 35617782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 23838451 - 23838348
Alignment:
Q  349 ctttatttattaattttgttacgt-tgcaaaaatttaacct-aattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattcc 445  Q
    ||||||||||||||||||||| || ||||  |||||||||| |||||||||| | || ||||||||||||| ||||||||||||||||| |||||||| |    
T  23838451 ctttatttattaattttgttaggtctgcagcaatttaaccttaattttttcccgctcatttgctttattagttttgcaattatttaacctaacaaattgc 23838352  T
Q  446 atct 449  Q
    ||||    
T  23838351 atct 23838348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 345 - 444
Target Start/End: Original strand, 13797436 - 13797537
Alignment:
Q  345 atatctttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||||||||||||||| ||| |||  || |||||||| |||||||| | || ||||||||||||||||||||||||||||||  |||||||    
T  13797436 atatccttatttattaattttgttaggtttgcatcaacttaacctagttttttcctgctcatttgctttattaggtttgcaattatttaacttaacaaat 13797535  T
Q  443 tc 444  Q
    ||    
T  13797536 tc 13797537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 23960692 - 23960588
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttctt-ttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||| |||||||| ||||||||| | | ||  |||||||||||||||| ||||||||||||| ||||||||    
T  23960692 tatccttatttattaattttgttacgtctgcaacaatttaacttaatttttttc-tgctcattgctttattaggtttacaattatttaacctaacaaatt 23960594  T
Q  444 ccatct 449  Q
     |||||    
T  23960593 tcatct 23960588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 33198828 - 33198972
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaat-tttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  ||||||||||||| |||||||| || |||||| |||||||||  || | |||||||| ||||||||    
T  33198828 tatcattatttattaattttgttaggtctgcagcaatttaacctaatatttttccgctcatttgctgtattaggttaacagtgatttaacctaacaaatt 33198927  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||          |||||||||||||||||||| ||||||||||||    
T  33198928 ccatct----aaaaaatgcatcgcaccaatttcattcctatcctcttgc 33198972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 539
Target Start/End: Complemental strand, 37198023 - 37197823
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttatta--------ggtttgcaattatttaaccaa 436  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||||||||| ||| || ||| ||||||||        ||||||||||||||||||| |    
T  37198023 tatccttatttattaattttgttacgtctgcagcaatttaacctaattttt-ccgctcattttctttattaatttattaggtttgcaattatttaaccta 37197925  T
Q  437 acaaattccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc--gnnnnnnnngaagaaaatattttctacatttatccttattta 534  Q
    |||||||||||||          |||||||||||||||||||| |||| |||||||           ||||||||||||||||||| |||||||||||||    
T  37197924 acaaattccatct---aaaaaaatgcatcgcaccaatttcattcctattctcttgccttttttttttgaagaaaatattttctacacttatccttattta 37197828  T
Q  535 ttaat 539  Q
    |||||    
T  37197827 ttaat 37197823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 34947505 - 34947576
Alignment:
Q  379 aatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||| ||| || |||||||||||||||||| |||||||||||| |||||||| |||||    
T  34947505 aatttaacctaatttttttccgctcatttgctttattaggtttgaaattatttaacctaacaaatttcatct 34947576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 40399571 - 40399500
Alignment:
Q  379 aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||||| | || |||| ||||||||||||| |||||||||||| ||||||||||||||    
T  40399571 aatttaacctaattttttcccgctcatttgttttattaggtttgtaattatttaacctaacaaattccatct 40399500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 37426111 - 37426216
Alignment:
Q  346 tatctttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||||||||||||||||||||||||||| |||  || |||  |||||||||| | | || ||| ||||||||||||||||||| ||||||  ||||||||    
T  37426111 tatctttatttattaattttgttacgtttgcagcaagttagtctaatttttttcagctcatttactttattaggtttgcaattgtttaacataacaaatt 37426210  T
Q  444 ccatct 449  Q
    ||||||    
T  37426211 ccatct 37426216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 44429050 - 44429150
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || | ||| || |||||||||| |||||| | || |||||||||||||||  ||||| |||||||| |||||||||||||    
T  44429050 ttatttattaattttgttaggtctccaacaacttaacctaatattttccctctcatttgctttattaggtaagcaataatttaacctaacaaattccatc 44429149  T
Q  449 t 449  Q
    |    
T  44429150 t 44429150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 18308343 - 18308258
Alignment:
Q  359 taattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||||||||||| | ||||| || |||||||||||||||||   || |||||||||||||||| |||||||||||||| |||||||    
T  18308343 taattttgttacatctgcaataacttaacctaattttttcccactcatttgctttattaggttcgcaattatttaacctaacaaat 18308258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 23838242 - 23838173
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggt 418  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||| ||| || |||||||||||||||    
T  23838242 ttatttattaattttgttaggtctgcaacaatttaacctaattttttcccgctcatttgctttattaggt 23838173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 39922021 - 39921968
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc 398  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39922021 tatccttatttattaattttgttacgtctgcaacaatttaacctaattttttcc 39921968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 1276575 - 1276535
Alignment:
Q  403 ttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  1276575 ttttgctttattaggtttgcaattatttaacctaacaaatt 1276535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 43419132 - 43419036
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||||| | ||||  || |||| ||||||||| ||| || |||||||||||||||||   | ||||||||| |||||||| |||||    
T  43419132 ttatttattaattttgttacatctgcatcaacttaatctaatttttcccgctcatttgctttattaggttt---actatttaacctaacaaatttcatct 43419036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 441
Target Start/End: Original strand, 44429219 - 44429316
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaat-tttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||| ||||||||||||||||||| || ||||| || |||||||||| |||||||  || |||||||||||||||  ||| | |||||||| ||||||    
T  44429219 tatccttatttattaattttgttaggtctgcaacaacttaacctaatatttttcctctcatttgctttattaggtaagcagtaatttaacccaacaaa 44429316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 490
Target Start/End: Original strand, 2084870 - 2085015
Alignment:
Q  345 atatctttatttattaattttgttacgtt-gcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| ||||||||||||||||||| ||| |||  || |||| ||||| |||||| | || |||||| ||||||||| | | | |||||||| |||||||    
T  2084870 atatccttatttattaattttgttaggtttgcagcaacttaatctaatattttccctctcatttgctgtattaggttagtagtaatttaacctaacaaat 2084969  T
Q  443 tccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctctt 490  Q
    |||||||          |||||||||||||||||||| ||||||||||    
T  2084970 tccatct--aagaaaaatgcatcgcaccaatttcattcctatcctctt 2085015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 37197839 - 37197788
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt 396  Q
    |||| |||||||||||||||||||||| ||||  ||||||||||||||||||    
T  37197839 tatccttatttattaattttgttacgtctgcagcaatttaacctaatttttt 37197788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 539
Target Start/End: Original strand, 44429204 - 44429235
Alignment:
Q  508 aatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||||||||||||||||    
T  44429204 aatattttctacatttatccttatttattaat 44429235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 539
Target Start/End: Original strand, 44433956 - 44433987
Alignment:
Q  508 aatattttctacatttatccttatttattaat 539  Q
    ||||||||||||||||||||||||||||||||    
T  44433956 aatattttctacatttatccttatttattaat 44433987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 37198044 - 37198007
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  37198044 gaagaaattattttctacacttatccttatttattaat 37198007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 39922042 - 39922005
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||| || ||||||||||||||||||    
T  39922042 gaagaaaatattttcttcacttatccttatttattaat 39922005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Complemental strand, 27854420 - 27854388
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  27854420 tgcatcgcaccaatttcattcctatcctcttgc 27854388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 39922278 - 39922226
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt 396  Q
    ||||| |||||||||||||||||||||| | ||  ||||||||||||||||||    
T  39922278 atatccttatttattaattttgttacgtcttcagcaatttaacctaatttttt 39922226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 44433737 - 44433769
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||| ||||||||||||    
T  44433737 tgcatcgcaccaatttcattcctatcctcttgc 44433769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 346 - 492
Target Start/End: Original strand, 17201592 - 17201737
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaa-ttttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| |||||||||||||||||||||||||| ||||||||    
T  17201592 tatccttatttattaattttgttacgtctgcaacaatttaacctaacttttttccgctcatttgttttattaggtttgcaattatttaacctaacaaatt 17201691  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
     |||||          |||||||||||||||||||| ||||||||||||    
T  17201692 tcatct---aaaaaaatgcatcgcaccaatttcattgctatcctcttgc 17201737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 490
Target Start/End: Original strand, 23610427 - 23610570
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    |||| ||||||||||||||||||| || ||||| ||||||||||||||||||  ||| || ||||||||||||||||| ||||||||||||| |||||||    
T  23610427 tatccttatttattaattttgttaggtctgcaacaatttaacctaatttttttcccgctcatttgctttattaggttt-caattatttaacctaacaaat 23610525  T
Q  443 tccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctctt 490  Q
    |||||||          |||||||||||||||||||||||||||||||    
T  23610526 tccatct---acaaaaatgcatcgcaccaatttcatttctatcctctt 23610570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 25068188 - 25068329
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaac-aaattccat 447  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||| |||||||||    
T  25068188 ttatttattaattttgttacgtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaaattccat 25068287  T
Q  448 ctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||          |||||||||||||||||||| ||||||||||||    
T  25068288 ct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 25068329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 347 - 492
Target Start/End: Original strand, 9828915 - 9829059
Alignment:
Q  347 atctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    ||||||||| |||||||||||||| | ||||  |||||||| ||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||    
T  9828915 atctttattaattaattttgttacctctgcagcaatttaacttaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattc 9829014  T
Q  445 catctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||          |||||||||||||||||||| ||||||||||||    
T  9829015 catct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 9829059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 32208518 - 32208413
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaatta-tttaaccaaacaaatt 443  Q
    |||| |||||||||||||||| || || ||||| ||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||    
T  32208518 tatccttatttattaattttgctaggtctgcaacaatttaatctaattttttccgctcatttgctttattaggtttgcaattattttaacctaacaaatt 32208419  T
Q  444 ccatct 449  Q
    ||||||    
T  32208418 ccatct 32208413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 4811168 - 4811068
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||| |||||||||||| ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||| |||||||||    
T  4811168 ttatttatttattttgttacgtctgcagcaatttaacctaattttttcccgctcgtttgctttattaggtttgcaattatttaacctaactaattccatc 4811069  T
Q  449 t 449  Q
    |    
T  4811068 t 4811068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 17906906 - 17906806
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| ||| |||  |||||||||||||||||||| | || |||||||||||||||||| |||||||||||| |||||||||||||    
T  17906906 ttatttattaattttgttaggtttgcagcaatttaacctaattttttccagctcatttgctttattaggtttgtaattatttaacctaacaaattccatc 17906807  T
Q  449 t 449  Q
    |    
T  17906806 t 17906806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 27579598 - 27579698
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||  || ||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||||||| ||||||||| |||    
T  27579598 ttatttattaattttgttcggtctgcaacaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaattcaatc 27579697  T
Q  449 t 449  Q
    |    
T  27579698 t 27579698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 23622213 - 23622312
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||| |||||||||||| |||||||   || ||||||||||||||||||||||||||||||| ||||||||    
T  23622213 tatccttatttattaattttgttaggtctgcaataatttaacctaactttttcccactcatttgctttattaggtttgcaattatttaacctaacaaatt 23622312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 347 - 449
Target Start/End: Original strand, 27315283 - 27315386
Alignment:
Q  347 atctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattcc 445  Q
    ||||||||||||||||||||||  || ||||  || |||||||||||||||||  |  ||||||||||||||||||||||||||||||| |||||||||     
T  27315283 atctttatttattaattttgttcggtctgcagcaacttaacctaattttttccactaatttgctttattaggtttgcaattatttaacctaacaaattca 27315382  T
Q  446 atct 449  Q
    ||||    
T  27315383 atct 27315386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 808829 - 808930
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    |||| |||||||||||||| || ||||  ||||||||||||||||||  ||  || |||||||||||||||||||||||||||||||||||||||| |||    
T  808829 ttatctattaattttgttaggtctgcagcaatttaacctaatttttttcccactcatttgctttattaggtttgcaattatttaaccaaacaaatttcat 808928  T
Q  448 ct 449  Q
    ||    
T  808929 ct 808930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 539
Target Start/End: Original strand, 25067962 - 25068151
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||| ||||||||||||| | ||||  |||||||||||||||||| ||| || |||||||||| |||||||||||||||||||  |||||||| ||||    
T  25067962 ttatttgttaattttgttacatctgcagcaatttaacctaatttttttccgctcatttgctttataaggtttgcaattatttaacataacaaattacatc 25068061  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc--gnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
    |          |||||||||||||||||||| ||||||||||||            |||||||||||||||||| ||||||||||||||||||    
T  25068062 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgccttttttttttaaagaaaatattttctacacttatccttatttattaat 25068151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 17202845 - 17202950
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||| |||||||||| || ||||  |||||||||||||||||||| |  | ||||||||||||| ||||||||||||||||| ||||||||    
T  17202845 tatccttatttataaattttgttaggtctgcagcaatttaacctaattttttcccgcccatttgctttattagatttgcaattatttaacctaacaaatt 17202944  T
Q  444 ccatct 449  Q
    ||||||    
T  17202945 ccatct 17202950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 4100424 - 4100280
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaa-ttttttccgttc----ttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    ||||||||||||||||||| || ||||  |||||||||||| ||||||||||||     |||||||||||| |||||||||||||||| | |||||||||    
T  4100424 ttatttattaattttgttaggtctgcagcaatttaacctaatttttttccgttcattaatttgctttattatgtttgcaattatttaagctaacaaattc 4100325  T
Q  445 catctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||          |||||||||||||||||||||||| ||||||||    
T  4100324 catct---aaaaaaatgcatcgcaccaatttcatttctaccctcttgc 4100280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 26832622 - 26832522
Alignment:
Q  351 ttatttattaattttgttacgttgcaaaaatttaacctaattttttccgttctt--ttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||| |||||||  |||||| |||||||||||||||||| |   |||  |||||||||||||||||||||||||||||  |||||||| ||||    
T  26832622 ttatttattaactttgttagattgcaacaatttaacctaatttttttccagcttatttgctttattaggtttgcaattatttaacttaacaaattacatc 26832523  T
Q  449 t 449  Q
    |    
T  26832522 t 26832522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 17202661 - 17202731
Alignment:
Q  381 tttaacctaattttttcc--gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||| |  | || ||||||||||||||||||||||||||||| | ||||||||||||||    
T  17202661 tttaacctaatttttttcacgctcatttgctttattaggtttgcaattatttaatctaacaaattccatct 17202731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 808472 - 808556
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaac 433  Q
    |||||||||||||||||||  | ||||  |||||||| |||||||||| || || ||||||||||||| ||||||||||||||||    
T  808472 ttatttattaattttgttagttctgcagcaatttaacgtaattttttctcgctcatttgctttattagatttgcaattatttaac 808556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 15130899 - 15130995
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatt-ttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattcc 445  Q
    |||||||||||||||||||||| ||||  || ||||| ||| | ||||||  || || |||||||||| ||||||||||||||||| ||||||||||    
T  15130899 ttatttattaattttgttacgtctgcagcaacttaacgtaaatattttccactcattcgctttattagatttgcaattatttaacctaacaaattcc 15130995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 415
Target Start/End: Original strand, 29201552 - 29201624
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaa-ttttttccgttcttttgctttatta 415  Q
    ||||| ||||||||||||||||||| || ||||  |||||||||||| ||||||||| || ||||||||||||    
T  29201552 atatccttatttattaattttgttaggtctgcagcaatttaacctaatttttttccgctcatttgctttatta 29201624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Complemental strand, 4100085 - 4100056
Alignment:
Q  463 atcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||||||||||||||||||||||||    
T  4100085 atcgcaccaatttcatttctatcctcttgc 4100056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 32208539 - 32208502
Alignment:
Q  502 gaagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  32208539 gaagaaaatattttttacacttatccttatttattaat 32208502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 23902615 - 23902647
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    ||||| |||||||||||||||||||||||||||    
T  23902615 tgcattgcaccaatttcatttctatcctcttgc 23902647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 32208645 - 32208577
Alignment:
Q  381 tttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||| || |||||||| |  ||||||| ||||| ||| ||||||||||||  ||||||||||||||    
T  32208645 tttaaccaaaatttttccgctgatttgcttgattagatttccaattatttaacttaacaaattccatct 32208577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 347 - 491
Target Start/End: Original strand, 4941674 - 4941817
Alignment:
Q  347 atctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||||||||||||||||||||||| | | ||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||     
T  4941674 atctttatttattaattttgttacatctacaataatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattt 4941773  T
Q  445 catctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
    |||||          |||||||||||||||||||| |||||||||||    
T  4941774 catct---aaaaaaatgcatcgcaccaatttcattgctatcctcttg 4941817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 48076185 - 48076290
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  ||||||| |||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||    
T  48076185 tatccttatttattaattttgttacgtctgcagcaatttaatctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 48076284  T
Q  444 ccatct 449  Q
    ||||||    
T  48076285 ccatct 48076290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 23952610 - 23952471
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||| || || ||||||||||||||||||||||||||||||| || |||||||||     
T  23952610 ttatttattaattttgttacgtctgcagcaatttaacctaattttttcacgctcatttgctttattaggtttgcaattatttaacctaaaaaattccatt 23952511  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  23952510 t----aaaaaatgcatcgcaccaatttcattcctatcctcttgc 23952471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 28813220 - 28813324
Alignment:
Q  346 tatctttatttattaattttgttacgttg-caaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||| ||||||||||||||||||| |||  ||| ||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||||||||     
T  28813220 tatccttatttattaattttgttaggtttacaacaatttaatctaattttttccgctcatttgctttattaggtttgtaattatttaaccaaacaaattt 28813319  T
Q  445 catct 449  Q
    |||||    
T  28813320 catct 28813324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 43161851 - 43161746
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||| ||||||||| ||||| |||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| ||||||||    
T  43161851 tatccttatttattaatcttgttacgtctgcaacaatttaacctaattttttcccgctcatttgcattattaggtttgcaattatttaacctaacaaatt 43161752  T
Q  444 ccatct 449  Q
     |||||    
T  43161751 tcatct 43161746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 47768947 - 47769052
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||||||||||||||||||||| ||||  |||||||||||||||||| ||| || ||||||| ||||||||||||||||||||||| ||||||||    
T  47768947 tatccttatttattaattttgttacgtctgcagcaatttaacctaatttttttccgctcatttgcttcattaggtttgcaattatttaacctaacaaatt 47769046  T
Q  444 ccatct 449  Q
     |||||    
T  47769047 tcatct 47769052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 354 - 539
Target Start/End: Original strand, 48076371 - 48076556
Alignment:
Q  354 tttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnn 451  Q
    ||||||||||||||||||| ||||  ||||||||||||||||| || | || ||||||||||||||||||||||||||||||| |||||||| |||||      
T  48076371 tttattaattttgttacgtctgcagcaatttaacctaatttttccccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct-- 48076468  T
Q  452 nnnnnnnntgcatcgcaccaatttcatttctatcctcttg-cgnnnnnnnngaagaaaatattttctacatttatccttatttattaat 539  Q
            ||||||||||||||||||||  |||||| ||| |         ||||||||||||||||||| ||||||||||||||||||    
T  48076469 -aaaaaaatgcatcgcaccaatttcattcttatccttttgcctttttttttgaagaaaatattttctacaattatccttatttattaat 48076556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 48076540 - 48076645
Alignment:
Q  346 tatctttatttattaattttgttacgtt-gcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||||||| |||  |||||||||||||||||| ||| |  ||||||||||||||||| ||||||||||||| ||||||||    
T  48076540 tatccttatttattaattttgttacgtttgcagcaatttaacctaatttttttccgctaatttgctttattaggtttacaattatttaacctaacaaatt 48076639  T
Q  444 ccatct 449  Q
    ||||||    
T  48076640 ccatct 48076645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 8118378 - 8118481
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||| |||||||||||||| ||||||| ||||| |||||||| ||||||||| || || ||||||||||||||||||||||||||||||| ||||||||     
T  8118378 tatccttatttattaattt-gttacgtctgcaacaatttaacttaatttttttcgctcatttgctttattaggtttgcaattatttaacctaacaaattt 8118476  T
Q  445 catct 449  Q
    |||||    
T  8118477 catct 8118481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 23952886 - 23952786
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||| ||| || |||| |||||||||||||||||||||||||  |||||||||||||    
T  23952886 ttatttattaattttgttacgtctgcagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaacttaacaaattccatc 23952787  T
Q  449 t 449  Q
    |    
T  23952786 t 23952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 36639172 - 36639272
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||| ||||    
T  36639172 ttatttattaattttgttacgtttgtagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 36639271  T
Q  449 t 449  Q
    |    
T  36639272 t 36639272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 54653755 - 54653655
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||| | || |||||||||||||||||||| |||||||||| ||||||||| |||    
T  54653755 ttatttattaattttgttacgtctgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcagttatttaacctaacaaattcaatc 54653656  T
Q  449 t 449  Q
    |    
T  54653655 t 54653655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 344 - 449
Target Start/End: Complemental strand, 28379874 - 28379768
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| ||||||||||||||||||| || ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||| ||    
T  28379874 catatccttatttattaattttgttaggtctgcatcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaac-aa 28379776  T
Q  442 ttccatct 449  Q
    ||||||||    
T  28379775 ttccatct 28379768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 347 - 492
Target Start/End: Complemental strand, 2481758 - 2481617
Alignment:
Q  347 atctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| | || ||||||||||||||||||||   |||||||| |||||||||    
T  2481758 atctttatctattaattttgttacgtctgcaacaacttaacctaattttttcccgctcatttgctttattaggtttgca---atttaacctaacaaattc 2481662  T
Q  445 catctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||          |||||||||||||||||||| ||||||||||||    
T  2481661 catct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 2481617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 444
Target Start/End: Original strand, 22292891 - 22292993
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| |||||||||||||||| || || ||||  |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||    
T  22292891 catatccttatttattaattttgctaggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaa 22292990  T
Q  442 ttc 444  Q
    |||    
T  22292991 ttc 22292993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 44500666 - 44500772
Alignment:
Q  345 atatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaat 442  Q
    ||||| || |||||||||||||||| || ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||  |||||||    
T  44500666 atatccttgtttattaattttgttaggtctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacgtaacaaat 44500765  T
Q  443 tccatct 449  Q
    |||||||    
T  44500766 tccatct 44500772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 444
Target Start/End: Original strand, 47631539 - 47631633
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    ||||||||||||||||| | || ||||  ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||||||||    
T  47631539 ttatttattaattttgtcaggtctgcatcaatttaacctaatttattctgctcttttgctttattaggtttgcaattatttaacctaacaaattc 47631633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 346 - 492
Target Start/End: Complemental strand, 52689729 - 52689584
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||||||||||||||||||| ||| || ||||  |||||| ||||||||||||| | || |||||||||||||||||| |||||||||||| ||||||||    
T  52689729 tatctttatttattaattttattaggtctgcattaatttatcctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatt 52689630  T
Q  444 ccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
     |||||          |||||||||||||||||||| ||||||||||||    
T  52689629 tcatct---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 52689584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 21585662 - 21585562
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||| | | || ||||||||||||||||||||||||||||||  |||||||| ||||    
T  21585662 ttatttattaattttgttacgtctgcaacaatttaacttaatttttttcctctcatttgctttattaggtttgcaattatttaacttaacaaatttcatc 21585563  T
Q  449 t 449  Q
    |    
T  21585562 t 21585562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 24049565 - 24049665
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||| |||| ||||    
T  24049565 ttatttattaattttgttaggtgtgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacgaatttcatc 24049664  T
Q  449 t 449  Q
    |    
T  24049665 t 24049665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 343 - 446
Target Start/End: Complemental strand, 28380085 - 28379981
Alignment:
Q  343 acatatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    ||||||| ||||||||||||||||||| || ||||  |||||||||||||||||   | || |||| |||||||||||||||||||||||||| ||||||    
T  28380085 acatatccttatttattaattttgttaggtctgcaccaatttaacctaatttttcttgctcatttgttttattaggtttgcaattatttaacctaacaaa 28379986  T
Q  442 ttcca 446  Q
    |||||    
T  28379985 ttcca 28379981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 361 - 449
Target Start/End: Original strand, 22292701 - 22292791
Alignment:
Q  361 attttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||| || ||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  22292701 attttgttaggtctgcaataatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaataccatct 22292791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 36639340 - 36639445
Alignment:
Q  346 tatctttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| |||| |||||||||||||| ||| |||  |||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||| ||||||||    
T  36639340 tatccttatatattaattttgttaggtttgcagcaatttaacctaattttttcccgttcattttctttattaggattgcaattatttaacctaacaaatt 36639439  T
Q  444 ccatct 449  Q
     |||||    
T  36639440 tcatct 36639445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 53144951 - 53144851
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||  | ||||  |||||||||||||||||||| | || |||||||||||||||||| |||||||||||| |||||||| ||||    
T  53144951 ttatttattaattttgttagatctgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatttcatc 53144852  T
Q  449 t 449  Q
    |    
T  53144851 t 53144851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 7796780 - 7796879
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  |||||||||||||||||| ||| || |||||||||||||| ||| |||||||||||| ||||||||    
T  7796780 tatccttatttattaattttgttaggtctgcagcaatttaacctaatttttttccgctcatttgctttattaggattgtaattatttaacctaacaaatt 7796879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 8118620 - 8118697
Alignment:
Q  373 tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||| |||||||||||||||||| ||| || |||||||||||||| |||||||||||||||| |||||||| |||||    
T  8118620 tgcaacaatttaacctaatttttttccgctcatttgctttattagggttgcaattatttaacctaacaaatttcatct 8118697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 8397853 - 8397748
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  |||||||||||||||||| | | || |||| |||||||||||||||||||||||||  ||||||||    
T  8397853 tatccttatttattaattttgttaggtctgcagcaatttaacctaatttttttctgctcgtttgttttattaggtttgcaattatttaacttaacaaatt 8397754  T
Q  444 ccatct 449  Q
     |||||    
T  8397753 tcatct 8397748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 21581351 - 21581282
Alignment:
Q  381 tttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||||||||| |||||||| |||||    
T  21581351 tttaacctaattttttctcgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 21581282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 32010789 - 32010688
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaacc-aaacaaattccat 447  Q
    |||||||||||||||||||||| ||||  ||||||| |||||||||| ||| || ||| |||||||||||||| |||||||| ||| |||||||||||||    
T  32010789 ttatttattaattttgttacgtctgcagtaatttaaactaatttttttccgctcattttctttattaggtttgtaattattttacctaaacaaattccat 32010690  T
Q  448 ct 449  Q
    ||    
T  32010689 ct 32010688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 7821303 - 7821443
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  |||||||||||||||||||| |  | ||||||||||||   |||||||||||||||| || ||||||||||    
T  7821303 ttatttattaattttgttaggtatgcagcaatttaacctaattttttcccgcccatttgctttattaatgttgcaattatttaacctaataaattccatc 7821402  T
Q  449 tnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |          |||||||||||||||||||| ||||||||||||    
T  7821403 t---aaaaaaatgcatcgcaccaatttcattcctatcctcttgc 7821443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 12796226 - 12796126
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||| ||| || || |  |||||||||||||||||| ||| || |||| |||||||||||||||||||||||| | |||||||||||||    
T  12796226 ttatttattaattttattaggtatgtagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaatctaacaaattccatc 12796127  T
Q  449 t 449  Q
    |    
T  12796126 t 12796126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 28389877 - 28389777
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| ||| |||  |||| | |||||| |||||| | || |||||||||||||||||||| |||||||||| |||||||||||||    
T  28389877 ttatttattaattttgttaggtttgcagtaattcatcctaatattttcccgctcatttgctttattaggtttgcatttatttaacctaacaaattccatc 28389778  T
Q  449 t 449  Q
    |    
T  28389777 t 28389777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 29967179 - 29967279
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| ||| |||  || ||||||||||||||||| | || |||| |||||||| ||||||||||| ||||| |||||||||||||    
T  29967179 ttatttattaattttgttaggtttgcagcaacttaacctaattttttcccgctcatttgttttattagatttgcaattatataacctaacaaattccatc 29967278  T
Q  449 t 449  Q
    |    
T  29967279 t 29967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 47631360 - 47631460
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattt-tttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||||||||||||||||| || ||||  ||||||||||||||| |||| | |  |||||||| |||||||||||||||||||||| |||||||| ||||    
T  47631360 ttatttattaattttgttaggtatgcatcaatttaacctaatttatttctgctaatttgctttgttaggtttgcaattatttaacctaacaaatttcatc 47631459  T
Q  449 t 449  Q
    |    
T  47631460 t 47631460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 491
Target Start/End: Original strand, 7821512 - 7821658
Alignment:
Q  344 catatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    |||||| ||||||||||||||||||| || || |  |||||||||||||||||| | | || |||||||||||||||||| |||||||||||| |  |||    
T  7821512 catatccttatttattaattttgttaggtctggagcaatttaacctaattttttactgctcatttgctttattaggtttgtaattatttaacctacaaaa 7821611  T
Q  442 ttccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctcttg 491  Q
    || |||||          |||||||||||||||||||| |||||||||||    
T  7821612 tttcatct---aaaaaaatgcatcgcaccaatttcattcctatcctcttg 7821658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 347 - 449
Target Start/End: Original strand, 2177260 - 2177364
Alignment:
Q  347 atctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattc 444  Q
    ||||||||||||||||| |||||  | ||||  |||||||  ||||||||||| | || |||||||||||||||||||||||| |||||| ||||||||     
T  2177260 atctttatttattaattctgttagatctgcagcaatttaatttaattttttcccgctcatttgctttattaggtttgcaattacttaacctaacaaattt 2177359  T
Q  445 catct 449  Q
    |||||    
T  2177360 catct 2177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 7809348 - 7809448
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    ||||| ||||||||||||| || ||||| |||| ||||||||||||| | | || |||||||||||||||||| |||||||||||| || ||||| ||||    
T  7809348 ttattcattaattttgttaggtatgcaacaattgaacctaatttttttctgctcatttgctttattaggtttgtaattatttaacctaaaaaatttcatc 7809447  T
Q  449 t 449  Q
    |    
T  7809448 t 7809448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 8079354 - 8079395
Alignment:
Q  408 ctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  8079354 ctttattaggtttgcaattatttaacctaacaaattccatct 8079395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 43162002 - 43161933
Alignment:
Q  379 aatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    |||||||| ||| |||||| || || ||||||||||||||||||||||||||||||  ||||||||||||    
T  43162002 aatttaacttaactttttcacgctcatttgctttattaggtttgcaattatttaacttaacaaattccat 43161933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 492
Target Start/End: Complemental strand, 8479208 - 8479110
Alignment:
Q  389 aattttttccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttcatttctatcctc 488  Q
    ||||||||||| || ||||||||||||| |||||||||| |||||| |||||||| |||||          |||||||||||||||||||| ||||||||    
T  8479208 aattttttccgctcatttgctttattagatttgcaatta-ttaacctaacaaatttcatct----aaaaaatgcatcgcaccaatttcattcctatcctc 8479114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 24049338 - 24049383
Alignment:
Q  404 tttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||||||||||||||||  ||||||| |||||    
T  24049338 tttgctttattaggtttgcaattatttaacctgacaaatttcatct 24049383  T

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Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 21585509 - 21585473
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||| ||||||||||||||||||    
T  21585509 aagaaaatattttctacacttatccttatttattaat 21585473  T

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Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 43161871 - 43161835
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||| ||||||||||||||||||    
T  43161871 aagaaaatattttctacacttatccttatttattaat 43161835  T

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Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 54653813 - 54653845
Alignment:
Q  460 tgcatcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||||||||||||||||    
T  54653813 tgcatcgcaccaatttcatttctatcctcttgc 54653845  T

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Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 7809561 - 7809632
Alignment:
Q  379 aatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaattccatct 449  Q
    |||||||||||||||||| | | || ||||||||||||| |||| |||||||||||| || ||||| |||||    
T  7809561 aatttaacctaatttttttctgctcatttgctttattagatttgtaattatttaacctaaaaaatttcatct 7809632  T

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Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Complemental strand, 8397407 - 8397378
Alignment:
Q  463 atcgcaccaatttcatttctatcctcttgc 492  Q
    ||||||||||||||||||||||||||||||    
T  8397407 atcgcaccaatttcatttctatcctcttgc 8397378  T

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Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 23952658 - 23952613
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttt 395  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||    
T  23952658 ttatttattaattttgttacgtctgcagtaatttaacctaattttt 23952613  T

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Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 23952706 - 23952661
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaattttt 395  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||    
T  23952706 ttatttattaattttgttacgtctgcagtaatttaacctaattttt 23952661  T

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Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 24046060 - 24046113
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc 398  Q
    |||| ||||||||||||||||||| || ||||  ||||||||||||||||||||    
T  24046060 tatccttatttattaattttgttaggtgtgcagcaatttaacctaattttttcc 24046113  T

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Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 41852188 - 41852151
Alignment:
Q  412 attaggtttgcaattatttaaccaaacaaattccatct 449  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  41852188 attaggtttgcaattatttaacctaacaaatttcatct 41852151  T

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Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 48076343 - 48076379
Alignment:
Q  503 aagaaaatattttctacatttatccttatttattaat 539  Q
    |||||||||||||||||| |||||||| |||||||||    
T  48076343 aagaaaatattttctacacttatccttctttattaat 48076379  T

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Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 492
Target Start/End: Complemental strand, 52689209 - 52689181
Alignment:
Q  464 tcgcaccaatttcatttctatcctcttgc 492  Q
    |||||||||||||||||||||||||||||    
T  52689209 tcgcaccaatttcatttctatcctcttgc 52689181  T

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Target: scaffold0018 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 163913 - 163808
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    |||| ||||||||||||||||||| || ||||  ||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||| || |||||    
T  163913 tatccttatttattaattttgttaggtctgcagcaatttaacctactttttttccgctcatttgctttattaggtttgcaattatttaacctaataaatt 163814  T
Q  444 ccatct 449  Q
    ||||||    
T  163813 ccatct 163808  T

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Target: scaffold0013 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 102700 - 102803
Alignment:
Q  346 tatctttatttattaattttgttacgt-tgcaaaaatttaacctaattttttcc-gttcttttgctttattaggtttgcaattatttaaccaaacaaatt 443  Q
    ||||||||||||||||||||||||  | ||||| ||||  |||||||||||||| | || |||||||||||| |||||||||||||||||| ||||||||    
T  102700 tatctttatttattaattttgttagatatgcaataatt--acctaattttttcccgctcatttgctttattaagtttgcaattatttaacctaacaaatt 102797  T
Q  444 ccatct 449  Q
    ||||||    
T  102798 ccatct 102803  T

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Target: scaffold0294 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 441
Target Start/End: Complemental strand, 12491 - 12399
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaa 441  Q
    ||||||||||||||||||| ||| |||  |||||||||||||||||| ||| || |||| |||||||||||||||||||||||||| ||||||    
T  12491 ttatttattaattttgttaggtttgcagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaacctaacaaa 12399  T

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Target: scaffold0240 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 351 - 449
Target Start/End: Original strand, 13092 - 13192
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt-ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||| |||  || ||||| |||||||||||||||||| ||| || |||| |||||||||||||| ||||||||||| |||||||||||||    
T  13092 ttatttattaatttcgtttggtctgcaacaatttaacctaatttttttccgctcatttggtttattaggtttgccattatttaacctaacaaattccatc 13191  T
Q  449 t 449  Q
    |    
T  13192 t 13192  T

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Target: scaffold0240; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 492
Target Start/End: Original strand, 13285 - 13391
Alignment:
Q  384 aacctaattttttccgt-tcttttgctttattaggtttgcaattatttaaccaaacaaattccatctnnnnnnnnnntgcatcgcaccaatttcatttct 482  Q
    ||||||||||||||| | || |||||||||||||| |||||||||||||||| |||||||| |||||          |||||||||||||||||||| ||    
T  13285 aacctaattttttccctctcatttgctttattagggttgcaattatttaacctaacaaatttcatct---aaaaaaatgcatcgcaccaatttcattcct 13381  T
Q  483 atcctcttgc 492  Q
    ||||||||||    
T  13382 atcctcttgc 13391  T

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Target: scaffold0504 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 1640 - 1539
Alignment:
Q  351 ttatttattaattttgttacgt-tgcaaaaatttaacctaatttttt--ccgttcttttgctttattaggtttgcaattatttaaccaaacaaattccat 447  Q
    |||||||||||||||||||||| ||||  ||||||| |||| |||||  ||  || |||||||||||| |||||||||||||||||| || |||||||||    
T  1640 ttatttattaattttgttacgtctgcagcaatttaatctaaattttttcccactcatttgctttattaagtttgcaattatttaacctaataaattccat 1541  T
Q  448 ct 449  Q
    ||    
T  1540 ct 1539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 14686 - 14586
Alignment:
Q  351 ttatttattaattttgttacgtt-gcaaaaatttaacctaattttttc-cgttcttttgctttattaggtttgcaattatttaaccaaacaaattccatc 448  Q
    |||||||||||||||||||| || |||  |||||||| |||||| ||| || || |||| |||||||| ||||||||||||||||| ||||||||| |||    
T  14686 ttatttattaattttgttacatttgcatcaatttaacttaatttattctcgctcatttgttttattagatttgcaattatttaacctaacaaattctatc 14587  T
Q  449 t 449  Q
    |    
T  14586 t 14586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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