View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1877_low_20 (Length: 235)

Name: NF1877_low_20
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1877_low_20
NF1877_low_20
[»] chr4 (22 HSPs)
chr4 (1-221)||(53998965-53999185)
chr4 (13-56)||(25063367-25063410)
chr4 (15-55)||(11314046-11314086)
chr4 (15-56)||(37219861-37219902)
chr4 (15-56)||(42671898-42671939)
chr4 (17-56)||(17655660-17655699)
chr4 (15-56)||(10442582-10442622)
chr4 (15-56)||(21802115-21802155)
chr4 (12-45)||(36073589-36073622)
chr4 (15-55)||(22199490-22199529)
chr4 (12-56)||(36073253-36073297)
chr4 (13-45)||(44893666-44893698)
chr4 (1-45)||(46442084-46442128)
chr4 (15-45)||(31078614-31078644)
chr4 (15-45)||(33530479-33530509)
chr4 (15-45)||(44893008-44893038)
chr4 (15-45)||(47290306-47290336)
chr4 (15-45)||(53123271-53123301)
chr4 (15-56)||(2625067-2625107)
chr4 (15-56)||(7744907-7744947)
chr4 (17-45)||(9089110-9089138)
chr4 (17-45)||(24128479-24128507)
[»] chr6 (13 HSPs)
chr6 (15-56)||(29693675-29693716)
chr6 (16-51)||(34238883-34238918)
chr6 (15-56)||(17175816-17175856)
chr6 (15-56)||(17705264-17705304)
chr6 (14-55)||(18365368-18365408)
chr6 (14-55)||(18370632-18370672)
chr6 (15-56)||(28675378-28675418)
chr6 (15-56)||(33696927-33696967)
chr6 (13-45)||(33695119-33695151)
chr6 (13-52)||(582520-582559)
chr6 (15-45)||(32702445-32702475)
chr6 (7-56)||(2309210-2309258)
chr6 (15-56)||(23290876-23290916)
[»] chr3 (28 HSPs)
chr3 (7-56)||(24343779-24343828)
chr3 (15-56)||(40328061-40328102)
chr3 (12-56)||(47738341-47738385)
chr3 (15-56)||(36864827-36864868)
chr3 (12-51)||(42298086-42298125)
chr3 (16-63)||(46919117-46919164)
chr3 (13-55)||(19650693-19650734)
chr3 (14-55)||(3089650-3089690)
chr3 (15-56)||(3456294-3456334)
chr3 (15-56)||(9796824-9796864)
chr3 (15-56)||(22426140-22426180)
chr3 (15-56)||(33114024-33114064)
chr3 (15-56)||(37216848-37216888)
chr3 (15-55)||(3574321-3574360)
chr3 (15-55)||(6042108-6042147)
chr3 (13-56)||(2754949-2754991)
chr3 (5-52)||(8361824-8361870)
chr3 (13-56)||(26612976-26613019)
chr3 (13-56)||(30385630-30385672)
chr3 (17-56)||(33145942-33145980)
chr3 (14-45)||(37522293-37522324)
chr3 (17-52)||(42921359-42921394)
chr3 (15-45)||(3137209-3137239)
chr3 (15-45)||(34482683-34482713)
chr3 (15-45)||(48161146-48161176)
chr3 (27-56)||(33839765-33839794)
chr3 (15-52)||(41224468-41224504)
chr3 (16-56)||(8320378-8320417)
[»] chr2 (17 HSPs)
chr2 (15-56)||(22592942-22592983)
chr2 (8-45)||(10662128-10662165)
chr2 (12-56)||(9293367-9293410)
chr2 (15-55)||(27847791-27847831)
chr2 (6-40)||(21936313-21936347)
chr2 (12-45)||(7475300-7475333)
chr2 (15-56)||(43331142-43331182)
chr2 (15-55)||(13355079-13355118)
chr2 (13-45)||(33380447-33380479)
chr2 (13-52)||(9723640-9723679)
chr2 (14-45)||(35160999-35161030)
chr2 (15-45)||(23267857-23267887)
chr2 (18-56)||(31174633-31174670)
chr2 (14-51)||(14941169-14941205)
chr2 (19-55)||(3989307-3989342)
chr2 (15-43)||(34320963-34320991)
chr2 (13-45)||(39819287-39819319)
[»] chr8 (28 HSPs)
chr8 (15-59)||(30834850-30834894)
chr8 (17-56)||(37132477-37132516)
chr8 (18-56)||(3890412-3890450)
chr8 (12-56)||(10044578-10044621)
chr8 (13-56)||(24844653-24844696)
chr8 (10-45)||(42754832-42754867)
chr8 (12-45)||(25581031-25581064)
chr8 (15-56)||(31347571-31347611)
chr8 (15-56)||(37985851-37985891)
chr8 (15-55)||(15187791-15187830)
chr8 (13-45)||(17841643-17841675)
chr8 (15-54)||(1645759-1645797)
chr8 (14-45)||(3596835-3596866)
chr8 (17-56)||(20091598-20091636)
chr8 (13-56)||(30055746-30055788)
chr8 (17-56)||(34665611-34665649)
chr8 (17-56)||(38017163-38017201)
chr8 (15-45)||(1503638-1503668)
chr8 (15-45)||(6108028-6108058)
chr8 (17-55)||(24211169-24211206)
chr8 (15-45)||(26041908-26041938)
chr8 (15-45)||(32064986-32065016)
chr8 (15-45)||(40779924-40779954)
chr8 (27-56)||(1886643-1886672)
chr8 (15-52)||(7017653-7017689)
chr8 (15-56)||(7022209-7022249)
chr8 (16-45)||(14129099-14129128)
chr8 (19-63)||(27782134-27782178)
[»] scaffold0204 (1 HSPs)
scaffold0204 (9-45)||(4636-4672)
[»] scaffold0085 (1 HSPs)
scaffold0085 (12-56)||(48079-48122)
[»] chr1 (19 HSPs)
chr1 (4-56)||(32000050-32000101)
chr1 (16-56)||(52064373-52064413)
chr1 (15-56)||(18404678-18404718)
chr1 (15-56)||(20304925-20304965)
chr1 (15-56)||(27523050-27523091)
chr1 (15-56)||(33786426-33786466)
chr1 (15-55)||(3559848-3559887)
chr1 (15-55)||(25463907-25463946)
chr1 (13-45)||(25973647-25973679)
chr1 (16-56)||(40215218-40215257)
chr1 (14-45)||(37821628-37821659)
chr1 (17-56)||(44690818-44690857)
chr1 (15-45)||(6883727-6883757)
chr1 (14-56)||(19722893-19722934)
chr1 (18-56)||(33786659-33786696)
chr1 (15-45)||(36966503-36966533)
chr1 (15-45)||(41876237-41876267)
chr1 (15-45)||(51737745-51737775)
chr1 (15-55)||(44094928-44094967)
[»] chr7 (17 HSPs)
chr7 (10-45)||(35876484-35876519)
chr7 (16-63)||(37476876-37476922)
chr7 (15-55)||(15577642-15577681)
chr7 (13-45)||(24395211-24395243)
chr7 (24-56)||(29737374-29737406)
chr7 (15-55)||(42612042-42612081)
chr7 (15-45)||(3962218-3962248)
chr7 (15-45)||(25167651-25167681)
chr7 (15-45)||(35445637-35445667)
chr7 (15-45)||(48880722-48880752)
chr7 (15-56)||(18037207-18037247)
chr7 (12-45)||(30848809-30848842)
chr7 (15-56)||(34483068-34483108)
chr7 (15-56)||(45637941-45637981)
chr7 (17-45)||(4974532-4974560)
chr7 (12-56)||(36790268-36790312)
chr7 (14-42)||(40880640-40880668)
[»] chr5 (14 HSPs)
chr5 (14-56)||(8145603-8145644)
chr5 (14-55)||(2477867-2477907)
chr5 (15-56)||(12614532-12614573)
chr5 (15-56)||(22912852-22912892)
chr5 (12-45)||(38899517-38899550)
chr5 (13-45)||(6043305-6043337)
chr5 (13-45)||(33584122-33584154)
chr5 (17-48)||(12614480-12614511)
chr5 (15-45)||(3521802-3521832)
chr5 (15-45)||(4892442-4892472)
chr5 (15-45)||(25398478-25398508)
chr5 (15-45)||(37321588-37321618)
chr5 (16-45)||(3363019-3363048)
chr5 (15-56)||(14138897-14138937)
[»] scaffold0096 (1 HSPs)
scaffold0096 (14-55)||(41241-41281)
[»] scaffold0228 (2 HSPs)
scaffold0228 (15-45)||(16224-16254)
scaffold0228 (15-45)||(26176-26206)
[»] scaffold0471 (1 HSPs)
scaffold0471 (17-45)||(13082-13110)
[»] scaffold0041 (1 HSPs)
scaffold0041 (14-42)||(85615-85643)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 53998965 - 53999185
Alignment:
Q  1 aataaataaataatggaaaatgctagatatcaagaatgattttatcaagaaagattaaataattataacaaagagtgcaatgatggttatgtcggacgaa 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53998965 aataaataaataatggaaaatattagatatcaagaatgattttatcaagaaagattaaataattataacaaagagtgcaatgatggttatgtcggacgaa 53999064  T
Q  101 gacggggtgacaatgaagacagcggcggcattgatgatggtgacaaaaggtgcaatgatggccatgctggaacgacgacaagcgtggctgtcgaaacgga 200  Q
    || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  53999065 gatggggtgacaatgaagacagtggcgacattgatgatggtgacaaaaggtgcaatgatggccatgctggaacgacgacaagcgtggcagtcgaaatgga 53999164  T
Q  201 ggcaacgtcaaagttgatgat 221  Q
    |||||| ||||||||||||||    
T  53999165 ggcaacatcaaagttgatgat 53999185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 25063367 - 25063410
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25063367 atggaaaatgctagatatcaagaatgattttatcaagaaagatt 25063410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 11314046 - 11314086
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11314046 ggaaaatgctagatatcaagaatgattttatcaagaaagat 11314086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 37219902 - 37219861
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  37219902 ggaaaatgttagatatcaagaatgattttatcaagaaagatt 37219861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 42671939 - 42671898
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  42671939 ggaaaatgttagatatcaagaatgattttatcaagaaagatt 42671898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 17655699 - 17655660
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  17655699 aaaatgctagatattaagaatgattttatcaagaaagatt 17655660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 10442582 - 10442622
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  10442582 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 10442622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 21802115 - 21802155
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  21802115 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 21802155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 36073622 - 36073589
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||||    
T  36073622 aatggaaaatgctagatatcaagaatgattttat 36073589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 22199529 - 22199490
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  22199529 ggaaaatgctagatatcaagaatgattttat-aagaaagat 22199490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 36073253 - 36073297
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||  || ||||||||||||||||||||||    
T  36073253 aatggaaaatgctagatactaaaaatgattttatcaagaaagatt 36073297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 44893698 - 44893666
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||    
T  44893698 atggaaaatgctagatatcaagaatgattttat 44893666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46442128 - 46442084
Alignment:
Q  1 aataaataaataatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||| | | |||||||||||||||||||||||||||||||    
T  46442128 aataaataatttaaggaaaatgctagatatcaagaatgattttat 46442084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 31078614 - 31078644
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  31078614 ggaaaatgctagatatcaagaatgattttat 31078644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 33530479 - 33530509
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  33530479 ggaaaatgctagatatcaagaatgattttat 33530509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 44893008 - 44893038
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  44893008 ggaaaatgctagatatcaagaatgattttat 44893038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 47290336 - 47290306
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  47290336 ggaaaatgctagatatcaagaatgattttat 47290306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 53123301 - 53123271
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  53123301 ggaaaatgctagatatcaagaatgattttat 53123271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 2625107 - 2625067
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  2625107 ggaaaatgttagatatcaagaatgattttat-aagaaagatt 2625067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 7744907 - 7744947
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  7744907 ggaaaatgttagatatcaagaatgattttat-aagaaagatt 7744947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 9089138 - 9089110
Alignment:
Q  17 aaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||    
T  9089138 aaaatgctagatatcaagaatgattttat 9089110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 24128507 - 24128479
Alignment:
Q  17 aaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||    
T  24128507 aaaatgctagatatcaagaatgattttat 24128479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 29693716 - 29693675
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29693716 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 29693675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 34238883 - 34238918
Alignment:
Q  16 gaaaatgctagatatcaagaatgattttatcaagaa 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  34238883 gaaaatgctagatatcaagaatgattttatcaagaa 34238918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 17175816 - 17175856
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  17175816 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 17175856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 17705264 - 17705304
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  17705264 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 17705304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 18365368 - 18365408
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  18365368 tggaaaatgctagatatcaagaatgattttat-aagaaagat 18365408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 18370632 - 18370672
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  18370632 tggaaaatgctagatatcaagaatgattttat-aagaaagat 18370672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 28675418 - 28675378
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  28675418 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 28675378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 33696967 - 33696927
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  33696967 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 33696927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 33695119 - 33695151
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||    
T  33695119 atggaaaatgctagatatcaagaatgattttat 33695151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 582520 - 582559
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaa 52  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  582520 atggaaaatgttagatatcaagaatgattttattaagaaa 582559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 32702475 - 32702445
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  32702475 ggaaaatgctagatatcaagaatgattttat 32702445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 2309210 - 2309258
Alignment:
Q  7 taaataatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||| |||||||||||||||||||||  |||||||||| ||||||||||    
T  2309210 taaattatggaaaatgctagatatcaacgatgattttat-aagaaagatt 2309258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 23290876 - 23290916
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  23290876 ggaaaatgctagatatcaaaaatgattttat-aagaaagatt 23290916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24343828 - 24343779
Alignment:
Q  7 taaataatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  24343828 taaataatggaaaatgttagatatcaagaatgattttatcaaaaaagatt 24343779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 40328102 - 40328061
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40328102 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 40328061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 47738385 - 47738341
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  47738385 aatggaaaatgttagatatcaagaatgattttatcaagaaagatt 47738341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 36864827 - 36864868
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  36864827 ggaaaatgctagatatcaagaatgattttatcaaaaaagatt 36864868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 42298125 - 42298086
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttatcaagaa 51  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  42298125 aatggaaaatgctaaatatcaagaatgattttatcaagaa 42298086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 46919164 - 46919117
Alignment:
Q  16 gaaaatgctagatatcaagaatgattttatcaagaaagattaaataat 63  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  46919164 gaaaatgttagatatcaagaatgattttatcaaaaaagattcaataat 46919117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 19650693 - 19650734
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  19650693 atggaaaatgctagatatcaagaatgattttat-aagaaagat 19650734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 3089690 - 3089650
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  3089690 tggaaaatgctagatatcaagaatgattttat-aagaaagat 3089650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 3456334 - 3456294
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  3456334 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 3456294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 9796824 - 9796864
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  9796824 ggaaaatgctagatatcaagaatga-tttatcaagaaagatt 9796864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 22426140 - 22426180
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  22426140 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 22426180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 33114064 - 33114024
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  33114064 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 33114024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 37216848 - 37216888
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  37216848 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 37216888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 3574321 - 3574360
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  3574321 ggaaaatgctagatatcaagaatgattttat-aagaaagat 3574360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 6042147 - 6042108
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  6042147 ggaaaatgctagatatcaagaatgattttat-aagaaagat 6042108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 2754991 - 2754949
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||    
T  2754991 atggaaaatgctagatatcaagaatcattttat-aagaaagatt 2754949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 8361824 - 8361870
Alignment:
Q  5 aataaataatggaaaatgctagatatcaagaatgattttatcaagaaa 52  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  8361824 aataaattaaggaaaatgctagatatcaagaatga-tttatcaagaaa 8361870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 26613019 - 26612976
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||    
T  26613019 atggaaaatgttagatatcaataatgattttattaagaaagatt 26612976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 30385672 - 30385630
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||    
T  30385672 atggaaaatgctaaatatcaagaatgattttat-aagaaagatt 30385630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 33145980 - 33145942
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  33145980 aaaatgctagatatcaagaatgattttat-aagaaagatt 33145942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 37522324 - 37522293
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||    
T  37522324 tggaaaatgctagatatcaagaatgattttat 37522293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 42921394 - 42921359
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaa 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  42921394 aaaatgctagatattaagaatgattttatcaagaaa 42921359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 3137209 - 3137239
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  3137209 ggaaaatgctagatatcaagaatgattttat 3137239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 34482683 - 34482713
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  34482683 ggaaaatgctagatatcaagaatgattttat 34482713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 48161176 - 48161146
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  48161176 ggaaaatgctagatatcaagaatgattttat 48161146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 33839794 - 33839765
Alignment:
Q  27 atatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||    
T  33839794 atatcaagaatgattttatcaagaaagatt 33839765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 41224504 - 41224468
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaa 52  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  41224504 ggaaaatgctagatatcaagaatga-tttatcaagaaa 41224468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 8320378 - 8320417
Alignment:
Q  16 gaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  8320378 gaaaatgctagatatcaataatgattttat-aagaaagatt 8320417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 22592983 - 22592942
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22592983 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 22592942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 10662165 - 10662128
Alignment:
Q  8 aaataatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10662165 aaataatggaaaatgctagatatcaagaatgattttat 10662128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 9293367 - 9293410
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  9293367 aatggaaaatgctagatatcaagaatgattttat-aagaaagatt 9293410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 27847831 - 27847791
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  27847831 ggaaaatgctagatatcaagaataattttatcaagaaagat 27847791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 21936347 - 21936313
Alignment:
Q  6 ataaataatggaaaatgctagatatcaagaatgat 40  Q
    |||||||||||||||||||||||||||||||||||    
T  21936347 ataaataatggaaaatgctagatatcaagaatgat 21936313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 7475300 - 7475333
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||||    
T  7475300 aatggaaaatgctagatatcaagaatgattttat 7475333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 43331182 - 43331142
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  43331182 ggaaaatgctagatatcaagaatga-tttatcaagaaagatt 43331142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 13355118 - 13355079
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  13355118 ggaaaatgctagatatcaagaatgattttat-aagaaagat 13355079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 33380479 - 33380447
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||    
T  33380479 atggaaaatgctagatatcaagaatgattttat 33380447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 9723679 - 9723640
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaa 52  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  9723679 atggaaaatgttagatatcaagaatgatttgatcaagaaa 9723640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 35161030 - 35160999
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||    
T  35161030 tggaaaatgctagatatcaagaatgattttat 35160999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 23267857 - 23267887
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  23267857 ggaaaatgctagatatcaagaatgattttat 23267887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 31174633 - 31174670
Alignment:
Q  18 aaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  31174633 aaatgctagatatcaagaatgattttat-aagaaagatt 31174670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 14941169 - 14941205
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttatcaagaa 51  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  14941169 tggaaaatgctagatatcaag-atgattttatcaagaa 14941205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 3989342 - 3989307
Alignment:
Q  19 aatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3989342 aatgctagatatcaagaatgattttat-aagaaagat 3989307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 34320963 - 34320991
Alignment:
Q  15 ggaaaatgctagatatcaagaatgatttt 43  Q
    |||||||||||||||||||||||||||||    
T  34320963 ggaaaatgctagatatcaagaatgatttt 34320991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 39819319 - 39819287
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||| ||||||||||||||||||||||    
T  39819319 atggaaaatgttagatatcaagaatgattttat 39819287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 30834850 - 30834894
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagattaaa 59  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  30834850 ggaaaatgatagatatcaagaatgattttatcaagaaagattaaa 30834894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 37132477 - 37132516
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37132477 aaaatgctagatatcaagaatgattttatcaagaaagatt 37132516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 3890412 - 3890450
Alignment:
Q  18 aaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3890412 aaatgctagatatcaagaatgattttatcaagaaagatt 3890450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 10044621 - 10044578
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  10044621 aatggaaaatgctagatatcaagaatgattttat-aagaaagatt 10044578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 24844653 - 24844696
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||| |||||||||| ||||||||||||||||||||||    
T  24844653 atggaaaatgttagatatcaataatgattttatcaagaaagatt 24844696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 42754832 - 42754867
Alignment:
Q  10 ataatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  42754832 ataatggaaaatgctagatatcaagaatgattttat 42754867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 25581031 - 25581064
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||||    
T  25581031 aatggaaaatgctagatatcaagaatgattttat 25581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 31347571 - 31347611
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  31347571 ggaaaatgctagatatcaagaatga-tttatcaagaaagatt 31347611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 37985851 - 37985891
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  37985851 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 37985891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 15187830 - 15187791
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  15187830 ggaaaatgctagatatcaagaatgattttat-aagaaagat 15187791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 17841643 - 17841675
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||    
T  17841643 atggaaaatgctagatatcaagaatgattttat 17841675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 1645759 - 1645797
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaaga 54  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  1645759 ggaaaatgctagatatcaagaatgattttat-aagaaaga 1645797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 3596835 - 3596866
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||    
T  3596835 tggaaaatgctagatatcaagaatgattttat 3596866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 20091598 - 20091636
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  20091598 aaaatgctagatatcaagaatgattttat-aagaaagatt 20091636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 30055788 - 30055746
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||| |||||||||||||| ||||||||||    
T  30055788 atggaaaatgctagatattaagaatgattttat-aagaaagatt 30055746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 34665649 - 34665611
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  34665649 aaaatgctagatatcaagaatgattttat-aagaaagatt 34665611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 38017201 - 38017163
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  38017201 aaaatgctagatatcaagaatgattttat-aagaaagatt 38017163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 1503638 - 1503668
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  1503638 ggaaaatgctagatatcaagaatgattttat 1503668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 6108028 - 6108058
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  6108028 ggaaaatgctagatatcaagaatgattttat 6108058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 24211169 - 24211206
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  24211169 aaaatgctagatatcaagaatgattttat-aagaaagat 24211206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 26041908 - 26041938
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  26041908 ggaaaatgctagatatcaagaatgattttat 26041938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 32065016 - 32064986
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  32065016 ggaaaatgctagatatcaagaatgattttat 32064986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 40779924 - 40779954
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  40779924 ggaaaatgctagatatcaagaatgattttat 40779954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 1886672 - 1886643
Alignment:
Q  27 atatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||    
T  1886672 atatcaagaatgattttatcaagaaagatt 1886643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 7017653 - 7017689
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaa 52  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  7017653 ggaaaatgctagatatcaagaatga-tttatcaagaaa 7017689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 7022249 - 7022209
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  7022249 ggaaaatgctagatatcaacaatga-tttatcaagaaagatt 7022209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 14129128 - 14129099
Alignment:
Q  16 gaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||    
T  14129128 gaaaatgctagatatcaagaatgattttat 14129099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 27782178 - 27782134
Alignment:
Q  19 aatgctagatatcaagaatgattttatcaagaaagattaaataat 63  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||    
T  27782178 aatgctatatatcaagaaatattttatcaagaaagattcaataat 27782134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 4672 - 4636
Alignment:
Q  9 aataatggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||||||    
T  4672 aataatggaaaatgctagatatcaagaatgattttat 4636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 48122 - 48079
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  48122 aatggaaaatgctagatatcaagaatgattttat-aagaaagatt 48079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 32000050 - 32000101
Alignment:
Q  4 aaataaataatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  32000050 aaataaaatatggaaaatgctagatatcaagaatga-tttatcaagaaagatt 32000101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 52064373 - 52064413
Alignment:
Q  16 gaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  52064373 gaaaatgctagatatcaaaaatgattttatcaagaaagatt 52064413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 18404718 - 18404678
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  18404718 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 18404678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 20304925 - 20304965
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  20304925 ggaaaatgctagatatcaagaatgattttat-aagaaagatt 20304965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 27523050 - 27523091
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  27523050 ggaaaatgttatatatcaagaatgattttatcaagaaagatt 27523091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 33786426 - 33786466
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  33786426 ggaaaatgctagatatcaagaatga-tttatcaagaaagatt 33786466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 3559887 - 3559848
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  3559887 ggaaaatgctagatatcaagaatgattttat-aagaaagat 3559848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 25463946 - 25463907
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  25463946 ggaaaatgctagatatcaagaatgattttat-aagaaagat 25463907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 25973679 - 25973647
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||    
T  25973679 atggaaaatgctagatatcaagaatgattttat 25973647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 40215257 - 40215218
Alignment:
Q  16 gaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  40215257 gaaaatgctagatatcaagaatgattttat-aagaaagatt 40215218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 37821628 - 37821659
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||    
T  37821628 tggaaaatgctagatatcaagaatgattttat 37821659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 44690818 - 44690857
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  44690818 aaaatgttagatatcaataatgattttatcaagaaagatt 44690857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 6883757 - 6883727
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  6883757 ggaaaatgctagatatcaagaatgattttat 6883727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 19722893 - 19722934
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  19722893 tggaaaatgttagatatcaagaatgattttat-aagaaagatt 19722934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 33786696 - 33786659
Alignment:
Q  18 aaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  33786696 aaatgctagatatcaagaatga-tttatcaagaaagatt 33786659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 36966503 - 36966533
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  36966503 ggaaaatgctagatatcaagaatgattttat 36966533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 41876237 - 41876267
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  41876237 ggaaaatgctagatatcaagaatgattttat 41876267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 51737775 - 51737745
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  51737775 ggaaaatgctagatatcaagaatgattttat 51737745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 44094967 - 44094928
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  44094967 ggaaaatgctagatatcaagaattattttat-aagaaagat 44094928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 35876519 - 35876484
Alignment:
Q  10 ataatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  35876519 ataatggaaaatgctagatatcaagaatgattttat 35876484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 37476876 - 37476922
Alignment:
Q  16 gaaaatgctagatatcaagaatgattttatcaagaaagattaaataat 63  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  37476876 gaaaatgctagatatcaagaatga-tttatcaagaaagatttaataat 37476922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 15577642 - 15577681
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  15577642 ggaaaatgctagatatcaagaatgattttat-aagaaagat 15577681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 24395243 - 24395211
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||    
T  24395243 atggaaaatgctagatatcaagaatgattttat 24395211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 29737406 - 29737374
Alignment:
Q  24 tagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||||||||    
T  29737406 tagatatcaagaatgattttatcaagaaagatt 29737374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 42612081 - 42612042
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  42612081 ggaaaatgctagatatcaagaatgattttat-aagaaagat 42612042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 3962248 - 3962218
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  3962248 ggaaaatgctagatatcaagaatgattttat 3962218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 25167651 - 25167681
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  25167651 ggaaaatgctagatatcaagaatgattttat 25167681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 35445667 - 35445637
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  35445667 ggaaaatgctagatatcaagaatgattttat 35445637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 48880722 - 48880752
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  48880722 ggaaaatgctagatatcaagaatgattttat 48880752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 18037247 - 18037207
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  18037247 ggaaaatgctagatatcaacaatga-tttatcaagaaagatt 18037207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 30848842 - 30848809
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||| ||||||    
T  30848842 aatggaaaatgctagatatcaagaatgcttttat 30848809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 34483108 - 34483068
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  34483108 ggaaaatgttagatatcaagaatgattttat-aagaaagatt 34483068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 45637981 - 45637941
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  45637981 ggaaaatgctagatattaagaatgattttat-aagaaagatt 45637941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 4974532 - 4974560
Alignment:
Q  17 aaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||    
T  4974532 aaaatgctagatatcaagaatgattttat 4974560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 36790268 - 36790312
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||| ||||||| |||| ||||||||| |||||||    
T  36790268 aatggaaaatgctaaatatcaataatggttttatcaacaaagatt 36790312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 40880640 - 40880668
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattt 42  Q
    |||||||||||||||||||||||||||||    
T  40880640 tggaaaatgctagatatcaagaatgattt 40880668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 8145644 - 8145603
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  8145644 tggaaaatgctagatatcaagaatgattttat-aagaaagatt 8145603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 2477907 - 2477867
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  2477907 tggaaaatgctagatatcaagaatgattttat-aagaaagat 2477867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 12614532 - 12614573
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  12614532 ggaaaatgctagatatcaagtatgattttatcaaaaaagatt 12614573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 22912852 - 22912892
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  22912852 ggaaaatgctagatatcaagaatga-tttatcaagaaagatt 22912892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 38899517 - 38899550
Alignment:
Q  12 aatggaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||||||    
T  38899517 aatggaaaatgctagatatcaagaatgattttat 38899550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 6043305 - 6043337
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||    
T  6043305 atggaaaatgctagatatcaagaatgattttat 6043337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 33584122 - 33584154
Alignment:
Q  13 atggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||||    
T  33584122 atggaaaatgctagatatcaagaatgattttat 33584154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 12614511 - 12614480
Alignment:
Q  17 aaaatgctagatatcaagaatgattttatcaa 48  Q
    ||||||||||||||||||||||||||||||||    
T  12614511 aaaatgctagatatcaagaatgattttatcaa 12614480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 3521802 - 3521832
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  3521802 ggaaaatgctagatatcaagaatgattttat 3521832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 4892472 - 4892442
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  4892472 ggaaaatgctagatatcaagaatgattttat 4892442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 25398508 - 25398478
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  25398508 ggaaaatgctagatatcaagaatgattttat 25398478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 37321588 - 37321618
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  37321588 ggaaaatgctagatatcaagaatgattttat 37321618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 3363048 - 3363019
Alignment:
Q  16 gaaaatgctagatatcaagaatgattttat 45  Q
    ||||||||||||||||||||||||||||||    
T  3363048 gaaaatgctagatatcaagaatgattttat 3363019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 14138937 - 14138897
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttatcaagaaagatt 56  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  14138937 ggaaaatgctagatattaagaatgattttat-aagaaagatt 14138897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 41281 - 41241
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattttatcaagaaagat 55  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  41281 tggaaaatgctagatatcaagaatgattttat-aagaaagat 41241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 16254 - 16224
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  16254 ggaaaatgctagatatcaagaatgattttat 16224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 26206 - 26176
Alignment:
Q  15 ggaaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||||    
T  26206 ggaaaatgctagatatcaagaatgattttat 26176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 13110 - 13082
Alignment:
Q  17 aaaatgctagatatcaagaatgattttat 45  Q
    |||||||||||||||||||||||||||||    
T  13110 aaaatgctagatatcaagaatgattttat 13082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 85643 - 85615
Alignment:
Q  14 tggaaaatgctagatatcaagaatgattt 42  Q
    |||||||||||||||||||||||||||||    
T  85643 tggaaaatgctagatatcaagaatgattt 85615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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