View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1877_low_21 (Length: 226)
Name: NF1877_low_21
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 2622734 - 2622880
Alignment:
| Q |
19 |
ggttactatgttgaaaagaaaatttctggagcagtccttgatgcacaattttattgcatatgctgtgaagtaacataatgcagtaataaaaataataaga |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2622734 |
ggttcctatgttgaaaagaaaatttctggagcagtccttgatgcacaattttattgcatatgctgtgaagtaacataatgcagtaataaaaataataaga |
2622833 |
T |
|
| Q |
119 |
acaaagaatggactagctttgcgaccactctcttccgattcttcccg |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2622834 |
acaaagaatggactagctttgcgaccactctcttccgattcttcccg |
2622880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University