View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1877_low_22 (Length: 226)
Name: NF1877_low_22
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_low_22 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 9084182 - 9084363
Alignment:
| Q |
45 |
attgaaaaactgagaatatgttaattatgggcattcctcgccaacagaatatactaggtgaaacaaatgttaatttgaaagtcttattttgtgttcttga |
144 |
Q |
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| T |
9084182 |
attgaaaaactgagaatatgttaattatgggcattcctcgccaacagaatatactaggtgaaacaaatgttaatttgaaagtcttattttgtgttcttga |
9084281 |
T |
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| Q |
145 |
tttaatcagataactttaaatatactaatgggttaagaagatatacaacaacttctattaatgtttctgagtcgttctcaaa |
226 |
Q |
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| T |
9084282 |
tttaatcagataactttaaatatactaatgggttaagaagatatacaacaacttctattaatgtttctgagtcgttctcaaa |
9084363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 9079132 - 9079291
Alignment:
| Q |
67 |
aattatgggcattcctcgccaacagaatatactaggtgaaacaaatgttaatttgaaagtcttattttgtgttcttgatttaatcagataactttaaata |
166 |
Q |
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| T |
9079132 |
aattgtgggcattcatctccaacaaaatatgatagcttaaataaatgttaatgtgaaagtcttattttgtgttcttgatttaatcagataaatttaatta |
9079231 |
T |
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| Q |
167 |
tactaatgggttaagaagatatacaacaacttctattaatgtttctgagtcgttctcaaa |
226 |
Q |
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| T |
9079232 |
tacttatgggtggagacgatatacaacaacttctattaatgtttctgagtcattctcaaa |
9079291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 10457383 - 10457334
Alignment:
| Q |
69 |
ttatgggcattcctcgccaacagaatatactaggtgaaacaaatgttaat |
118 |
Q |
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| T |
10457383 |
ttatgggcattcctctccaacaaaatatgctaggtaaaacaaatgttaat |
10457334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 10482909 - 10482865
Alignment:
| Q |
69 |
ttatgggcattcctcgccaacagaatatactaggtgaaacaaatg |
113 |
Q |
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| T |
10482909 |
ttatgggcattcctctcgaacaaaatatgctaggtgaaacaaatg |
10482865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 24051010 - 24051066
Alignment:
| Q |
72 |
tgggcattcctcgccaacagaatatactaggtgaaacaaatgttaatttgaaagtct |
128 |
Q |
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| T |
24051010 |
tgggcattcctctccaacaaaatatgctaggtgaaacaattcttaatgtgacagtct |
24051066 |
T |
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