View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1877_low_3 (Length: 524)

Name: NF1877_low_3
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1877_low_3
NF1877_low_3
[»] chr2 (15 HSPs)
chr2 (16-438)||(2321528-2321972)
chr2 (16-258)||(2294213-2294464)
chr2 (16-232)||(2303826-2304046)
chr2 (417-509)||(2322015-2322107)
chr2 (16-137)||(2310544-2310665)
chr2 (16-136)||(2351402-2351522)
chr2 (16-137)||(2327381-2327502)
chr2 (278-398)||(2294512-2294633)
chr2 (278-348)||(2339306-2339375)
chr2 (16-118)||(2331096-2331198)
chr2 (420-509)||(2331566-2331653)
chr2 (278-315)||(2304241-2304278)
chr2 (278-350)||(2331412-2331484)
chr2 (156-261)||(2327562-2327664)
chr2 (478-509)||(2294657-2294688)
[»] chr8 (2 HSPs)
chr8 (49-122)||(41127444-41127517)
chr8 (49-122)||(26507056-26507129)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 2321528 - 2321972
Alignment:
Q  16 ggaatttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttc 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321528 ggaatttcaattggcagcttccggagggtggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttc 2321627  T
Q  116 tcctagggtatag---------gttatgtgtaacgatttggagtatgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacac 206  Q
    |||||||||||||         ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  2321628 tcctagggtatagattatgtgtgttatgtgtaacgatttggagtatgtaatgttgt---gtgaaccactctagattctctgcttgagaatgtcataacac 2321724  T
Q  207 aacaggggaatattatatgtggatttctcatatggtgggattttgtttcatacaat--------------acaatgatc--ccttacttcttatatatct 290  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||              ||| | ||   |||||||||||||||||||    
T  2321725 aacaggggaatattatatgtggatttctcatatggtcggattttgtttcatacaatgatcccttatgcatacattcatatgccttacttcttatatatct 2321824  T
Q  291 tgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatcttgtttttgtaatatcaaagttgtt 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321825 tgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatcttgtttttgtaatatcaaagttgtt 2321924  T
Q  391 ttattttggtcgactgaagaaaaagaagaaatgtatgtcctagctaaa 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321925 ttattttggtcgactgaagaaaaagaagaaatgtatgtcctagctaaa 2321972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 2294213 - 2294464
Alignment:
Q  16 ggaatttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttc 115  Q
    |||||||| ||||| || |||| |||||||| |||||||||||| |||||| | | |||||||| |||||||||||||||||||||||||||||||||||    
T  2294213 ggaatttcgattggaaggttccagagggcgggcatgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatccattgcaagttcatatttc 2294312  T
Q  116 tcctagggtataggttatgtgt---------aacgatttggagtatgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacac 206  Q
    ||||||| ||||| ||||||||         |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2294313 tcctaggatatagattatgtgtgttatatgtaacgatgtggagtatgtaatgttgttgtgtgaaccaccctagattctctgcttgagaatgtcataacac 2294412  T
Q  207 aacaggggaatattatatgtggatttctcatatggtgggattttgtttcata 258  Q
    | ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  2294413 agcaggggagtattatatgtggatttgtcatatggtgggattttgtttcata 2294464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 2303826 - 2304046
Alignment:
Q  16 ggaatttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttc 115  Q
    |||||||| ||||| ||||||| ||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  2303826 ggaatttcgattggaagcttccagagggcggctatgttgatttgtcggaaaaacaagaattcaatatggtgatgaaaaatccattgcaagttcatatttc 2303925  T
Q  116 tcctagggtataggttatgtgtaacgatttggagt-----atgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaaca 210  Q
    ||||||| ||||| |||||| |    || || | |     ||   |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2303926 tcctaggatatagattatgt-tttttatgtgtaatgataaatcgtatgttcctgtgtgaaccactctagattctctgcttgagaatgtcataacacagca 2304024  T
Q  211 ggggaatattatatgtggattt 232  Q
      | ||||||||||||||||||    
T  2304025 aagaaatattatatgtggattt 2304046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 417 - 509
Target Start/End: Original strand, 2322015 - 2322107
Alignment:
Q  417 agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2322015 agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 2322107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 2310544 - 2310665
Alignment:
Q  16 ggaatttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttc 115  Q
    |||||||| ||||| || |||| |||||||| |||||||||||| |||||| | | ||||||||||||||||||||||||||| ||||||||||||||||    
T  2310544 ggaatttcgattggaaggttccagagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccagtgcaagttcatatttc 2310643  T
Q  116 tcctagggtataggttatgtgt 137  Q
    ||||||| ||||| ||||||||    
T  2310644 tcctaggatatagattatgtgt 2310665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 2351402 - 2351522
Alignment:
Q  16 ggaatttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttc 115  Q
    |||||||| ||||| || |||| || || || ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||    
T  2351402 ggaatttcgattggaaggttccagaaggtgggcatgttgatttgtcggaaaaacaagaattcactgtggtgatgaaaaatccattgcaagttcgtatttc 2351501  T
Q  116 tcctagggtataggttatgtg 136  Q
    ||||||| ||||| |||||||    
T  2351502 tcctaggatatagtttatgtg 2351522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 2327381 - 2327502
Alignment:
Q  16 ggaatttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttc 115  Q
    |||||||| ||||| || |||||||||| |||||||| |||||||| ||||||  |||||||||  ||||||||||||||||||||||||||||||||||    
T  2327381 ggaatttcgattggaaggttccggagggtggccatgtcgatttgtcagaaaaatttgaattcaccgtggtgatgaaaaatccattgcaagttcatatttc 2327480  T
Q  116 tcctagggtataggttatgtgt 137  Q
    || |||  ||||| ||||||||    
T  2327481 tcatagaatatagattatgtgt 2327502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 398
Target Start/End: Original strand, 2294512 - 2294633
Alignment:
Q  278 ttcttatatatcttgtttcttgtataaaataaaacat-gtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatc-ttgtttttgt 375  Q
    ||||||||||||||||||| ||||||||  ||||| | | |||||||||||||||||||||||||||||| |||| |||| |||||||| ||||| | ||    
T  2294512 ttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgta-aaaatatatgatctttgttgtagt 2294610  T
Q  376 aatatcaaagttgttttattttg 398  Q
    |||||  |||||| |||||||||    
T  2294611 aatattgaagttggtttattttg 2294633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 2339306 - 2339375
Alignment:
Q  278 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaat 348  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||    
T  2339306 ttcttatatatctcgtttcttgtataaaataaaacatgtttggcattctggtaag-caagatactttcaat 2339375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 2331096 - 2331198
Alignment:
Q  16 ggaatttcaattggcagcttccggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttc 115  Q
    |||||||| ||||| || |||| ||||| || |  ||||||||||| || ||| | |||||||||||||| ||||||||||||||||| | |||||||||    
T  2331096 ggaatttcgattggaaggttcccgagggtggtcgcgttgatttgtcagagaaacaggaattcactatggtcatgaaaaatccattgcaggctcatatttc 2331195  T
Q  116 tcc 118  Q
    |||    
T  2331196 tcc 2331198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 2331566 - 2331653
Alignment:
Q  420 aatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 509  Q
    |||||||||||||||| | ||  |||||||||||||||| | ||| | |||||||||||||||||| ||  |||||||||||||| ||||    
T  2331566 aatgtatgtcctagctgagac--ggaaattatgtttaggtttataatatctcatacaatatagattgtgcatcctccctaaacatttgtg 2331653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 2304241 - 2304278
Alignment:
Q  278 ttcttatatatcttgtttcttgtataaaataaaacatg 315  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304241 ttcttatatatcttgtttcttgtataaaataaaacatg 2304278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 2331412 - 2331484
Alignment:
Q  278 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgt 350  Q
    |||||| |||||||||||||| ||||||||||||||||  || | |||||| ||| |||||||| ||||||||    
T  2331412 ttcttacatatcttgtttcttatataaaataaaacatgcatgaccttcttgcaagccaagatacattcaatgt 2331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 2327562 - 2327664
Alignment:
Q  156 atgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcata-tggtgggattttgttt 254  Q
    ||||||||||||||||||  ||||||||||| ||||  |||||||||||   |||| |||||||||||||| ||||| ||| | ||||  ||||||| ||    
T  2327562 atgttgttgtgtgaaccatcctagattctct-cttggcaatgtcataac---acagcggaatattatatgtagatttgtcacattggtaagattttgctt 2327657  T
Q  255 catacaa 261  Q
    |||||||    
T  2327658 catacaa 2327664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 509
Target Start/End: Original strand, 2294657 - 2294688
Alignment:
Q  478 tatagattatgtttcctccctaaacatctgtg 509  Q
    ||||||||||||||||||||||||||||||||    
T  2294657 tatagattatgtttcctccctaaacatctgtg 2294688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 41127444 - 41127517
Alignment:
Q  49 atgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagg 122  Q
    ||||||||||||||||||||  |||||||||  |||| |||||||||||| |||||||||||||||||||||||    
T  41127444 atgttgatttgtcggaaaaaactgaattcaccgtggttatgaaaaatccactgcaagttcatatttctcctagg 41127517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 26507056 - 26507129
Alignment:
Q  49 atgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagg 122  Q
    ||||||||||||| |||||| | ||||| ||||||||||||||| |||||||| ||| ||| || |||||||||    
T  26507056 atgttgatttgtcagaaaaacaggaatttactatggtgatgaaatatccattggaagctcaaatatctcctagg 26507129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University