View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1877_low_7 (Length: 377)
Name: NF1877_low_7
Description: NF1877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1877_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 42393313 - 42393662
Alignment:
| Q |
12 |
agaagcaaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaa |
111 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393313 |
agaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaa |
42393412 |
T |
|
| Q |
112 |
gggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcatta |
211 |
Q |
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| T |
42393413 |
gggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgagacatta |
42393512 |
T |
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| Q |
212 |
gaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttccc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393513 |
gaagtggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttccc |
42393612 |
T |
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| Q |
312 |
aaccactgcttctaattcctcttgaaccttcctcattactcctggtttgt |
361 |
Q |
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| T |
42393613 |
aaccactgcttccaattcctcttgaaccttcctcattactcctggtttgt |
42393662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 42376766 - 42377110
Alignment:
| Q |
17 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtc |
116 |
Q |
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| T |
42376766 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtc |
42376865 |
T |
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| Q |
117 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagt |
216 |
Q |
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||||||||||||||||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || |||| |
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| T |
42376866 |
tctatgaatagcccaaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagt |
42376965 |
T |
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| Q |
217 |
ggaagtgatgggtgcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaacca |
316 |
Q |
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||||||| ||||| |||||||| ||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42376966 |
ggaagtgcagggtgtaaacgaagagtttctttcatcactgcatgtaagtaggttagcttgtgaatatgagactcttctactaagttatcttttccaacca |
42377065 |
T |
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| Q |
317 |
ctgcttctaattcctcttgaaccttcctcattactcctggtttgt |
361 |
Q |
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| | |||||| |||||||||||||||||||| ||| ||||||||| |
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| T |
42377066 |
cagtttctaactcctcttgaaccttcctcatcacttctggtttgt |
42377110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 130 - 358
Target Start/End: Original strand, 42387228 - 42387456
Alignment:
| Q |
130 |
caaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggt |
229 |
Q |
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|||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||| |
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| T |
42387228 |
caaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgttgggt |
42387327 |
T |
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| Q |
230 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttctaattc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
42387328 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttttgaatatgagactcttctactaagttatctttcccaaccacgatttccagttc |
42387427 |
T |
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| Q |
330 |
ctcttgaaccttcctcattactcctggtt |
358 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
42387428 |
ctcttgaaccttcctcattacttctggtt |
42387456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 42387162 - 42387220
Alignment:
| Q |
17 |
caaaggggaaataattaaagtcattccctttataatcccatttaccatccaagaacctt |
75 |
Q |
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|||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42387162 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaacctt |
42387220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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