View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18780_high_10 (Length: 300)
Name: NF18780_high_10
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_high_10 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 39257567 - 39257851
Alignment:
| Q |
16 |
atgctagaaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggcct |
115 |
Q |
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| T |
39257567 |
atgctagaaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggcct |
39257666 |
T |
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| Q |
116 |
tggttccaccattgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtgtcgccttaaggcaattctcaccaacgatgccttg |
215 |
Q |
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| T |
39257667 |
tggttccaccattgcctagagaaatggtgtataaggcaaggaagaaaacacccttttgcaatggtgtcgccttgaggcaattctcaccaacgatgccttc |
39257766 |
T |
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| Q |
216 |
tgtacatggtggtgggctcaatgatggtagtgaaactgctagagtcaacaaacacatcccctgagtgaaaagaaaacaaaaatca |
300 |
Q |
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| T |
39257767 |
tgtacatggtggtgggctcaatgatggtagtgaaactgctagagtcaacaaacacatcccctgagtgaaaagaaaacaaaaatca |
39257851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 39177878 - 39178133
Alignment:
| Q |
23 |
aaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggccttggttcc |
122 |
Q |
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| T |
39177878 |
aaaaccaccaattgaagaaagaaagcttataggatctctctttgggctcgaactcgtcaaattggtctgctcccattgtagaaatgtttggcttggtccc |
39177977 |
T |
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| Q |
123 |
accattgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtgtcgccttaaggcaattctcaccaacgatgccttgtgtacat |
222 |
Q |
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| T |
39177978 |
ccctgtgcctacggcaatgatatacagggcaaggaagaaaatacccttttgcaatgttgatgccttggggcagttatggtctgctatgcctggtgcacat |
39178077 |
T |
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| Q |
223 |
ggtggtgggctcaatgatggtagtgaaactgctagagtcaacaaacacatcccctg |
278 |
Q |
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| T |
39178078 |
tctggtggcctcaaagatggtagtgaaactgatagagtcaacaagcacattccctg |
39178133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 39239760 - 39239925
Alignment:
| Q |
16 |
atgctagaaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggcct |
115 |
Q |
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| T |
39239760 |
atgctaaaaaaccaccaattgaagaaggacaacttatcggatttctctttgggatcaaagtcatcaaattggtcagctcccatagtagaaatgttgggtt |
39239859 |
T |
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| Q |
116 |
tggttccaccattgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtg |
181 |
Q |
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| T |
39239860 |
tggttccacctgtgcctaaaacaattatgtacaaggcaaggaagaaaatacccttttgcaatggtg |
39239925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 39216343 - 39216595
Alignment:
| Q |
26 |
accaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggccttggttccacc |
125 |
Q |
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||||||||||||| || || || |||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||| || |
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| T |
39216343 |
accaccaattgaagaaggaaagtttataggtgctctctttgggctcgaactcgtcaaattggtctgctcccattgtagaaatgttgggcttggttcctcc |
39216442 |
T |
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| Q |
126 |
attgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtgtcgccttaaggcaattctcaccaacgatgccttgtgtacatggt |
225 |
Q |
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| T |
39216443 |
tgttcctacagcaatgatgtacagggcaaggaagaaaatacccctttgcaatggtgacgctctggggcaattttggtctgcaactccttgtgcacattct |
39216542 |
T |
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| Q |
226 |
ggtgggctcaatgatggtagtgaaactgctagagtcaacaaacacatcccctg |
278 |
Q |
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||||| ||||| |||| || ||| ||||||||||||||||||||||| ||||| |
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| T |
39216543 |
ggtggcctcaaagatgttactgagactgctagagtcaacaaacacattccctg |
39216595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 39223951 - 39224121
Alignment:
| Q |
16 |
atgctagaaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggcct |
115 |
Q |
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|||||| |||||||||||||||| || || ||||||||| |||||||| | || ||||||||||||||||||||||||| ||||||||||||| || |
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| T |
39223951 |
atgctaaaaaaccaccaattgaagaaggaaagcttataggtcctctctttaggctcgaactcgtcaaattggtctgctcccattgtagaaatgttgggct |
39224050 |
T |
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| Q |
116 |
tggttccaccattgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtgtcgcc |
186 |
Q |
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||||||| || | |||| || || | |||||| |||||||||||| | |||| ||||||| |||| |||| |
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| T |
39224051 |
tggttcctcctgttcctacagcaacgatgtatagggcaaggaagaatacacccctttgcaagggtgacgcc |
39224121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 39194644 - 39194896
Alignment:
| Q |
26 |
accaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggccttggttccacc |
125 |
Q |
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||||||||||||| || || || |||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||| | ||| ||||| || |
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| T |
39194644 |
accaccaattgaagaaggaaagtttataggtcctctctttgggctcgaactcgtcaaattggtctgctcccatcgtagaaatgttaggctttgttcctcc |
39194743 |
T |
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| Q |
126 |
attgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtgtcgccttaaggcaattctcaccaacgatgccttgtgtacatggt |
225 |
Q |
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| T |
39194744 |
tgttcctacagcaatgatgtacagggctaggaagaaaatacccctttgcaatggtgatgccctggggcaattttggtctgcaactccttgtgcacattct |
39194843 |
T |
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| Q |
226 |
ggtgggctcaatgatggtagtgaaactgctagagtcaacaaacacatcccctg |
278 |
Q |
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||||| ||||| |||| || ||| || |||||||||||||||||||| ||||| |
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| T |
39194844 |
ggtggcctcaaagatgttactgagacagctagagtcaacaaacacattccctg |
39194896 |
T |
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