View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18780_high_14 (Length: 250)
Name: NF18780_high_14
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_high_14 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 18791894 - 18792128
Alignment:
| Q |
16 |
ataatcaagcctagtgaaattaacacacctggaaatgcaaattatagaagactctccctccaaaggtctttgatgaagaaacattaagcagcaaaaggcc |
115 |
Q |
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| T |
18791894 |
ataatcaagcctagtgaaattaacacacctggaaatgcaaattatagaagaccctccctccaaaggtctttgatgaagaaacattaagcagcaaaaggcc |
18791993 |
T |
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| Q |
116 |
atcattttccaaacaaatcaagatctcagaaagtggaatcttttggacagtgtaacatgaaatctgaatggtaatttcactatcattgagcctactactt |
215 |
Q |
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| T |
18791994 |
atcattttccaaacaaatcaagatctcagaaagtggaatcttttggacagtgtaacatgaaatctgaatggtaatttcactatcattgagcctactaatt |
18792093 |
T |
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| Q |
216 |
gaaactacaaaaccagagttgtaactatgcttctt |
250 |
Q |
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| T |
18792094 |
gaaactacaaaaccagagttgtaactatgcttctt |
18792128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 18782434 - 18782652
Alignment:
| Q |
32 |
aaattaacacacctggaaatgcaaattatagaagactctccctccaaaggtctttgatgaagaaacattaagcagcaaaaggccatcattttccaaacaa |
131 |
Q |
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| T |
18782434 |
aaattaacacacctggaaatgcaaattatagaagactctccctccaaaggtctgagatgaagaaagattaagcagcaaaaggccatcattttccaaacac |
18782533 |
T |
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| Q |
132 |
atcaagatctcagaaagtggaatcttttggacagtgtaacatgaaatctgaatggtaatttcactatcattgagcctactacttgaaactacaaaaccag |
231 |
Q |
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| T |
18782534 |
atcaagatctcagaaagtggaatcttgtggacagtgtaacatgaaatctgaatggtaatttcactatcattgagccaacttgttgaaactacaaaaccag |
18782633 |
T |
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| Q |
232 |
agttgtaactatgcttctt |
250 |
Q |
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| T |
18782634 |
agttgtaactatgcttctt |
18782652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 18803368 - 18803586
Alignment:
| Q |
32 |
aaattaacacacctggaaatgcaaattatagaagactctccctccaaaggtctttgatgaagaaacattaagcagcaaaaggccatcattttccaaacaa |
131 |
Q |
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| T |
18803368 |
aaattaacacacctgaaaatgtaaattgtagaagatcctctctccaaaggtttgcgacgaagaaacatttagcaacaaaattccatcattttctaaacat |
18803467 |
T |
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| Q |
132 |
atcaagatctcagaaagtggaatcttttggacagtgtaacatgaaatctgaatggtaatttcactatcattgagcctactacttgaaactacaaaaccag |
231 |
Q |
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| T |
18803468 |
agcaaaatctcagaaagtggaatcttgtggacagtgtaacatgaaatctgaatagcaacttcactatcatttagccaacttgttgaaactacaaaaccag |
18803567 |
T |
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| Q |
232 |
agttgtaactatgcttctt |
250 |
Q |
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| T |
18803568 |
agttgtaactatgtttctt |
18803586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 35564462 - 35564347
Alignment:
| Q |
42 |
acctggaaatgcaaattatagaagactctccctccaaaggtctttgatgaagaaacattaagcagcaaaaggccatcattttccaaacaaatcaagatct |
141 |
Q |
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| T |
35564462 |
acctgaaaatgcaagttatagaagagcctccctccaaaggttttagaagaagaagagttaagtagaagaagaccattattttctaaacacatcaagatct |
35564363 |
T |
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| Q |
142 |
cagaaagtggaatctt |
157 |
Q |
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| T |
35564362 |
cagatagaggaatctt |
35564347 |
T |
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