View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18780_high_8 (Length: 327)

Name: NF18780_high_8
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18780_high_8
NF18780_high_8
[»] chr6 (6 HSPs)
chr6 (17-152)||(33010663-33010792)
chr6 (214-311)||(33010506-33010603)
chr6 (17-152)||(32683524-32683654)
chr6 (17-152)||(32685234-32685364)
chr6 (246-287)||(4749414-4749455)
chr6 (244-300)||(27434752-27434808)
[»] scaffold0022 (2 HSPs)
scaffold0022 (236-314)||(101126-101204)
scaffold0022 (236-278)||(101123-101165)
[»] scaffold0018 (1 HSPs)
scaffold0018 (236-300)||(67256-67320)
[»] chr8 (9 HSPs)
chr8 (236-314)||(287351-287429)
chr8 (236-300)||(10895907-10895971)
chr8 (236-284)||(12167193-12167241)
chr8 (236-284)||(12411621-12411669)
chr8 (243-287)||(16291972-16292016)
chr8 (236-287)||(17895037-17895088)
chr8 (236-278)||(287348-287390)
chr8 (261-314)||(287390-287443)
chr8 (236-272)||(25113411-25113447)
[»] chr4 (6 HSPs)
chr4 (236-314)||(24091-24169)
chr4 (236-283)||(14288161-14288208)
chr4 (236-278)||(24130-24172)
chr4 (236-278)||(13914751-13914793)
chr4 (261-314)||(13914737-13914790)
chr4 (244-300)||(18066749-18066805)
[»] chr2 (2 HSPs)
chr2 (236-300)||(45049537-45049601)
chr2 (236-284)||(5243273-5243321)
[»] chr3 (6 HSPs)
chr3 (243-300)||(6440879-6440936)
chr3 (236-287)||(6445181-6445232)
chr3 (236-287)||(9270763-9270814)
chr3 (236-300)||(20919306-20919370)
chr3 (236-300)||(20928268-20928332)
chr3 (236-300)||(37197867-37197931)
[»] scaffold0289 (1 HSPs)
scaffold0289 (236-300)||(22132-22196)
[»] chr1 (6 HSPs)
chr1 (236-284)||(3417366-3417414)
chr1 (246-314)||(11440848-11440916)
chr1 (236-287)||(8314035-8314086)
chr1 (261-314)||(8314021-8314074)
chr1 (246-287)||(11440836-11440877)
chr1 (243-314)||(3832194-3832266)
[»] scaffold1113 (1 HSPs)
scaffold1113 (17-78)||(1336-1399)
[»] scaffold0961 (1 HSPs)
scaffold0961 (17-78)||(2218-2281)
[»] chr5 (2 HSPs)
chr5 (236-297)||(19205915-19205976)
chr5 (243-284)||(29857750-29857791)
[»] scaffold0003 (1 HSPs)
scaffold0003 (244-300)||(52555-52611)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 33010792 - 33010663
Alignment:
Q  17 attaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaagagccaagcatg 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      || ||||||||||||||||||||||| ||    
T  33010792 attaagcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtg------agatagatacttgggaagagccaagcttg 33010699  T
Q  117 caaatcttggtctatgcgtgttcggttattatgtac 152  Q
    |||||||||||||||||||||| |||||||||||||    
T  33010698 caaatcttggtctatgcgtgtttggttattatgtac 33010663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 33010603 - 33010506
Alignment:
Q  214 cgtactcgtgagcttagctcagttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaatttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||||||||||||    
T  33010603 cgtactcgtgagcttagctcagttggctgatgaaaaataaataagtcatgatctattttgattaactaataaaatataattgaatcaacatcaatttt 33010506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 32683524 - 32683654
Alignment:
Q  17 attaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaagagccaagcatg 116  Q
    ||||||||||||||| |||||||||| | ||| |||||||||||| |||||||||| |||||||||||     ||||| |||||||||| |||||||  |    
T  32683524 attaggcagttgtgtagagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagt----tttagacacttgggaagtgccaagctcg 32683619  T
Q  117 caaatcttggtctatgcgtgttcggttattatgtac 152  Q
    |||||||| ||||||||||||  |||||||||||||    
T  32683620 caaatctt-gtctatgcgtgtctggttattatgtac 32683654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 32685234 - 32685364
Alignment:
Q  17 attaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaagagccaagcatg 116  Q
    |||||||||||||||  ||||||||| | ||| |||||||||||| |||||||||| |||||||||||     ||||| |||||||||| |||||||  |    
T  32685234 attaggcagttgtgtatagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagt----tttagacacttgggaagtgccaagctcg 32685329  T
Q  117 caaatcttggtctatgcgtgttcggttattatgtac 152  Q
    |||||||| ||||||||||||  |||||||||||||    
T  32685330 caaatctt-gtctatgcgtgtctggttattatgtac 32685364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 4749455 - 4749414
Alignment:
Q  246 aaaaataaatgagttatgatctattttgattggctaataaaa 287  Q
    |||||||||||||| ||||||| |||||||||||||| ||||    
T  4749455 aaaaataaatgagtcatgatctcttttgattggctaagaaaa 4749414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 27434808 - 27434752
Alignment:
Q  244 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  27434808 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 27434752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 101204 - 101126
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttgat 314  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||||||    
T  101204 ttggcttatgaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgat 101126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 101165 - 101123
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattgg 278  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  101165 ttggctaataaaaaataaatgagtcatgatctattttgattgg 101123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 67256 - 67320
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||    
T  67256 ttggctaatgaaaaataaatgagttatgatccattttgatttgctaataaaaaataaatgagtca 67320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 287429 - 287351
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttgat 314  Q
    |||||| || |||||||||||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||||||    
T  287429 ttggctaataaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgat 287351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 10895971 - 10895907
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    |||||| ||||||||||||||||| |||||| |||||||||| ||||||||| |||| |||||||    
T  10895971 ttggctaatgaaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagtca 10895907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 12167193 - 12167241
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 284  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  12167193 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12167241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 12411621 - 12411669
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 284  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  12411621 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12411669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 16292016 - 16291972
Alignment:
Q  243 atgaaaaataaatgagttatgatctattttgattggctaataaaa 287  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  16292016 atgaaaaataaatgagtcatgatccattttgattggataataaaa 16291972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 17895037 - 17895088
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 287  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||| ||||    
T  17895037 ttggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaa 17895088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 287390 - 287348
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattgg 278  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  287390 ttggctaataaaaaataaatgagtcatgatctattttgattgg 287348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 287443 - 287390
Alignment:
Q  261 atgatctattttgattggctaataaaatataattgagtcaacatcaattttgat 314  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||||||    
T  287443 atgatcaattttgattggctaataaaaaataaatgagtcatgatccattttgat 287390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 25113411 - 25113447
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctatttt 272  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  25113411 ttggctaatgaaaaataaatgagtcatgatctatttt 25113447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 24091 - 24169
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttgat 314  Q
    |||||| ||||||||||||||||| || ||| |||||||||||||||||||| |||| |||||||  ||| ||||||||    
T  24091 ttggctaatgaaaaataaatgagtcattatccattttgattggctaataaaaaataaatgagtcatgatctattttgat 24169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 14288161 - 14288208
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaat 283  Q
    |||||| ||||||||||||||||| |||||  ||||||||||||||||    
T  14288161 ttggctaatgaaaaataaatgagtcatgattcattttgattggctaat 14288208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 24130 - 24172
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattgg 278  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  24130 ttggctaataaaaaataaatgagtcatgatctattttgattgg 24172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 13914751 - 13914793
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattgg 278  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  13914751 ttggctaataaaaaataaatgagtcatgatctattttgattgg 13914793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 13914737 - 13914790
Alignment:
Q  261 atgatctattttgattggctaataaaatataattgagtcaacatcaattttgat 314  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||||||    
T  13914737 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgat 13914790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 18066749 - 18066805
Alignment:
Q  244 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  18066749 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 18066805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 45049601 - 45049537
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||  ||| |||||||    
T  45049601 ttggctaatgaaaaataaatgagtcatgatccattttgattggctaataaaaattaaatgagtca 45049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 5243273 - 5243321
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 284  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  5243273 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 5243321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 6440879 - 6440936
Alignment:
Q  243 atgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    ||||||||||||||||| |||||  |||||||||||| ||||||| ||||||||||||    
T  6440879 atgaaaaataaatgagtcatgattcattttgattggcaaataaaaaataattgagtca 6440936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 6445181 - 6445232
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 287  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||| ||||    
T  6445181 ttggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaa 6445232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 9270763 - 9270814
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 287  Q
    |||||| ||||||||||||||||| ||||| |||||| |||||| |||||||    
T  9270763 ttggctaatgaaaaataaatgagtcatgatttattttaattggcaaataaaa 9270814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 20919370 - 20919306
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    ||||||| |||||| |||||| || ||||   |||||||||||||||||||| |||| |||||||    
T  20919370 ttggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtca 20919306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 20928332 - 20928268
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    ||||||| |||||| |||||| || ||||   |||||||||||||||||||| |||| |||||||    
T  20928332 ttggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtca 20928268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 37197931 - 37197867
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    |||||||||||||| |||||| || ||||   ||||||||||| |||||||| |||| |||||||    
T  37197931 ttggctgatgaaaactaaatgtgtcatgaatcattttgattggttaataaaaaataaatgagtca 37197867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 22132 - 22196
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| | ||||||| |||| |||||||    
T  22132 ttggctaatgaaaaataaatgagtcatgatttattttgattgacaaataaaaaataaatgagtca 22196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 3417414 - 3417366
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 284  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  3417414 ttggctgatgaaaaataaatgagtcatgatccattttgattgactaata 3417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 11440916 - 11440848
Alignment:
Q  246 aaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttgat 314  Q
    |||||||||||||| |||||| |||||||||| ||||||||| |||| ||||| || ||| ||||||||    
T  11440916 aaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagttaagatccattttgat 11440848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 8314035 - 8314086
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 287  Q
    |||||| || |||||||||||||| |||||||||||||||||| | ||||||    
T  8314035 ttggctaataaaaaataaatgagtcatgatctattttgattggttgataaaa 8314086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 8314021 - 8314074
Alignment:
Q  261 atgatctattttgattggctaataaaatataattgagtcaacatcaattttgat 314  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||||||    
T  8314021 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgat 8314074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 11440877 - 11440836
Alignment:
Q  246 aaaaataaatgagttatgatctattttgattggctaataaaa 287  Q
    |||||||||||||||| |||| ||||||||||| ||||||||    
T  11440877 aaaaataaatgagttaagatccattttgattggttaataaaa 11440836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 3832266 - 3832194
Alignment:
Q  243 atgaaaaataaatgagttat-gatctattttgattggctaataaaatataattgagtcaacatcaattttgat 314  Q
    ||||||||||||||||| || |||| | ||||||||||||||||||  ||| ||| |||| ||| ||||||||    
T  3832266 atgaaaaataaatgagtcattgatccaatttgattggctaataaaaagtaaatgattcaatatctattttgat 3832194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1113 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 1399 - 1336
Alignment:
Q  17 attaggcagttgtgtg--gagtaagaaaaggaaattgaactatgttccgttttatcctcaagtt 78  Q
    ||||||||||||||||  ||||||||||  ||||||||| ||||||  ||||||||||||||||    
T  1399 attaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 2218 - 2281
Alignment:
Q  17 attaggcagttgtgtg--gagtaagaaaaggaaattgaactatgttccgttttatcctcaagtt 78  Q
    ||||||||||||||||  ||||||||||  ||||||||| ||||||  ||||||||||||||||    
T  2218 attaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt 2281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 19205915 - 19205976
Alignment:
Q  236 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgag 297  Q
    |||||| |||||||||| |||||| |||||| |||| |||||||||||| || |||| ||||    
T  19205915 ttggctcatgaaaaatagatgagtcatgatccatttagattggctaatataaaataagtgag 19205976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 29857791 - 29857750
Alignment:
Q  243 atgaaaaataaatgagttatgatctattttgattggctaata 284  Q
    ||||||||||||||||| |||||| ||||||||||| |||||    
T  29857791 atgaaaaataaatgagtcatgatccattttgattggataata 29857750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 52555 - 52611
Alignment:
Q  244 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 300  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  52555 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 52611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University