View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18780_low_1 (Length: 567)
Name: NF18780_low_1
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 30626358 - 30626522
Alignment:
| Q |
79 |
cttgtacataaatttacactatattaatgtatgatttagaccgataagtagctcacttgta----tgagttgagttgagatattgattagttattcgacc |
174 |
Q |
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| T |
30626358 |
cttgtgcataaattttcactatattaatgtatgatttagaccgataagtagctcacttgtatgtatgagttgagttgagatattgattagttattcgacc |
30626457 |
T |
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| Q |
175 |
ctagtaacatttttcgtccccctaacaatttaagtgtgctgtttgctcgaatagttgcatatgtc |
239 |
Q |
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| T |
30626458 |
ctagtaacatttttcgtccccctaacaatttaagtgtgctgtttgctcgaatagttgcatgtgtc |
30626522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 299 - 550
Target Start/End: Original strand, 30626582 - 30626832
Alignment:
| Q |
299 |
ctgacatgcatggtttctcagtatctgctattttcctttgttttattgacaatgtttcctcttgtttatatataatcgcctnnnnnnnnnnnnnnnnnnn |
398 |
Q |
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| T |
30626582 |
ctgacatgcatggcttctcagtatctactattttcctttgttttattgacaatgtttcctcttgtttatatataatcgcct----taaataaaataaaaa |
30626677 |
T |
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| Q |
399 |
nnctcaat--atatataatctctagtcnnnnnnnnacatctatgtaaaaatttaacagtctataatgttaaattgatgactaaacttaatcaataagaga |
496 |
Q |
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| T |
30626678 |
aactcaatatatatataatctctagtcttttttttacatctatgtaaaaatttaacagtctataatgttaaattgatgactaaacttaatcaataagaga |
30626777 |
T |
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| Q |
497 |
gtactcctatatgacc-nnnnnnnttgctactagttaattaataagcacgtaatt |
550 |
Q |
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| T |
30626778 |
gtactcctatatgaccaaaaaaaattgctactagttaattaataagcacgtaatt |
30626832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 30626282 - 30626326
Alignment:
| Q |
5 |
tgtccaagaatatttatctcccgcataaacattgacctctataat |
49 |
Q |
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| T |
30626282 |
tgtccaataatatttatctcccgcataaacattgacctctataat |
30626326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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