View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18780_low_10 (Length: 357)
Name: NF18780_low_10
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 18782653 - 18782849
Alignment:
| Q |
1 |
cctttgagattctttgcttagaataaactcttctacttgtggagaaagtctcaataagatctcatcctttctcttaattagtccctctacttgattctgt |
100 |
Q |
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| T |
18782653 |
cctttgagattctttgcttagaataaactcttctacttgtggagaaagtcccaataagatctcatcctttctcttaattagtccctctacttgattctgt |
18782752 |
T |
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| Q |
101 |
aattcaggtatgtatttcaagactcttgaaattgttcccggaatgcttaatttcttctgcaacatataggtatacatcaacaaatatattaatacaa |
197 |
Q |
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| T |
18782753 |
aattcaggtatgtatttcaggactctagaaattgttcccggaatgcttaatttcttctacaacatataggtatacatcaacaaatatattaatacaa |
18782849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 18792129 - 18792302
Alignment:
| Q |
1 |
cctttgagattctttgcttagaataaactcttctacttgtggagaaagtctcaataagatctcatcctttctcttaattagtccctctacttgattctgt |
100 |
Q |
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| T |
18792129 |
cctttgagattctttgcttagaataaactcttctacttgtggagaaagtctcaataagatctcatcctttctcttaattagtccctctacttgattctgt |
18792228 |
T |
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| Q |
101 |
aattcaggtatgtatttcaagactcttgaaattgttcccggaatgcttaatttcttctgcaacatataggtata |
174 |
Q |
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| T |
18792229 |
aattcaggtatgtattttaggactcttgaaattgttgctggaatgctcaatttcttctgaaacatttatgtata |
18792302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 18803620 - 18803754
Alignment:
| Q |
34 |
tacttgtggagaaagtctcaataagatctcatcctttctcttaattagtccctctacttgattctgtaattcaggtatgtatttcaagactcttgaaatt |
133 |
Q |
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| T |
18803620 |
tacttgtggagaaagtctcaataagatctcttcttttctcttaactagtccttccacatgtttctgtatttctggtatgtattttaggactcttgaaatt |
18803719 |
T |
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| Q |
134 |
gttcccggaatgcttaatttcttctgcaacatata |
168 |
Q |
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| T |
18803720 |
gttgctggaatgctcaactttttctgcaacatata |
18803754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 35564156 - 35564089
Alignment:
| Q |
98 |
tgtaattcaggtatgtatttcaagactcttgaaattgttcccggaatgcttaatttcttctgcaacat |
165 |
Q |
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| T |
35564156 |
tgtaaatcagggatgtattttaagacacgtgaaattgttaccggaatgctcatttttttctgcaacat |
35564089 |
T |
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