View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18780_low_12 (Length: 321)
Name: NF18780_low_12
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 29503666 - 29503955
Alignment:
| Q |
16 |
atctaggcctgcacttgtcgaggcgatgttacttgtgaagaaagaaaacgtctttgggaagaaaagtttctctacgaaggcgaggtttgatgagaagaga |
115 |
Q |
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| T |
29503666 |
atctaggcctgcacttgtcgaggcgatgttacttgttaagaaagaaaacgtttttgggaagaaaagtttctctacgaaggcgaggtttgatgagaagaga |
29503765 |
T |
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| Q |
116 |
aaagagaatgagattgttgttgatagtttaacaggtaatagtactaatgatcctgaaatgtggattagcattgatggaattgttttgattcatgttaaga |
215 |
Q |
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| T |
29503766 |
aaagagaatgagattgttgttgatagtttaacaggtaatagtactaatgatcctgaaatgtggattagcattgatggaattgttttgattcatgttaaga |
29503865 |
T |
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| Q |
216 |
atttgcagtggaagtttagagggaatcaaacagttatggttaataaacaacctgtgcaagttttttgggatgttcatgattggttgttta |
305 |
Q |
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| T |
29503866 |
atttgcagtggaaatttagagggaatcaaactgttatggttaataaacaacctgtgcaagttttttgggatgttcatgattggttgttta |
29503955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 29509685 - 29509835
Alignment:
| Q |
16 |
atctaggcctgcacttgtcgaggcgatgttacttgtgaagaaagaaaacgtctttgggaagaaaagtttctctacgaaggcgaggtttgatgagaagaga |
115 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||| |||| | || ||||||||||||||||||| ||||| |||||| ||||||||| | |
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| T |
29509685 |
atctaggcctgcacttgtcaaggcgatgtttcttgtgaagaaagtaaacattttctggaagaaaagtttctctacaaaggcaaggtttaatgagaagaaa |
29509784 |
T |
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| Q |
116 |
aaagagaatgagattgttgttgatagtttaacaggtaatagtactaatgat |
166 |
Q |
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| T |
29509785 |
agacataatgagattgttgttgataggttaacaggtaatagtactaatgat |
29509835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 29493274 - 29493370
Alignment:
| Q |
16 |
atctaggcctgcacttgtcgaggcgatgttacttgtgaagaaagaaaacgtctttgggaagaaaagtttctctacgaaggcgaggtttgatgagaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29493274 |
atctaggcctgcacttgtcgaggcgatgttacttctgaagaaagaaaacatttttgggaagaaaagtttctctacgaaggcgaggtttgatgagaag |
29493370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 42230095 - 42230016
Alignment:
| Q |
224 |
tggaagtttagagggaatcaaacagttatggttaataaacaacctgtgcaagttttttgggatgttcatgattggttgtt |
303 |
Q |
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| T |
42230095 |
tggaaatttagaggaaatgaaatagtaatggtgaataatttacctgtgcaaatcttttgggatgtgcatgattggttgtt |
42230016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 53 - 305
Target Start/End: Original strand, 37208784 - 37209033
Alignment:
| Q |
53 |
aagaaagaaaacgtctttgggaagaaaagtttctctacgaaggcgaggtttgatgagaagagaaaagagaatgagattgttgttgatagtttaacaggta |
152 |
Q |
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|||| |||||| || |||| |||||||||||||| || ||||| | |||||||||||||||||||||| ||| ||||||||||| |||| ||| | | |
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| T |
37208784 |
aagagagaaaatgtttttgcaaagaaaagtttctcaacaaaggctaaatttgatgagaagagaaaagagagtgatattgttgttgaaagttcaactgctg |
37208883 |
T |
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| Q |
153 |
atagtactaatgatcctgaaatgtggattagcattgatggaattgttttgattcatgttaagaatttgcagtggaagtttagagggaatcaaacagttat |
252 |
Q |
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| T |
37208884 |
---gcaacaaagatcctgaaatgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttat |
37208980 |
T |
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| Q |
253 |
ggttaataaacaacctgtgcaagttttttgggatgttcatgattggttgttta |
305 |
Q |
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||||||||||||||||||||| || ||||||||||| ||||||||||||||| |
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| T |
37208981 |
ggttaataaacaacctgtgcatgtgttttgggatgtatatgattggttgttta |
37209033 |
T |
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