View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18780_low_17 (Length: 250)
Name: NF18780_low_17
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 25026188 - 25026415
Alignment:
| Q |
9 |
ttataatattgttatgtctctattataactttggtcaacttaattagtttgtaactaatctcattagtatctcccctaactataaccaaagaagtaaaaa |
108 |
Q |
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| T |
25026188 |
ttataatattgttatgtctctattataactttggtcaacttaattagtttgtaactaatctcattagtatctcccctaactataaccaaagaagtaaaaa |
25026287 |
T |
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| Q |
109 |
cgacatcatatgacaacaaattggaaaagagtaatatactagcaaaatgggtaacgtaagttgatatacttggtacaacaaattttaaatcagatacatt |
208 |
Q |
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| T |
25026288 |
cgacatcatatgataacaaattggaaaagagtaatatac--acaaaatcggtaacttaagttgatatatttagtacaacaaattttgaatcagatacatt |
25026385 |
T |
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| Q |
209 |
aatttttgtagattaaattttacttatatt |
238 |
Q |
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|||||||||||| |||||||||||| |||| |
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| T |
25026386 |
aatttttgtagaataaattttacttgtatt |
25026415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 35310304 - 35310354
Alignment:
| Q |
188 |
aaattttaaatcagatacattaatttttgtagattaaattttacttatatt |
238 |
Q |
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| T |
35310304 |
aaattttaaatcaaatacattaatttttgttgaccaatttttacttatatt |
35310354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 30693395 - 30693343
Alignment:
| Q |
186 |
acaaattttaaatcagatacattaatttttgtagattaaattttacttatatt |
238 |
Q |
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| T |
30693395 |
acaaattttgaatcaaatacattaatttttgttgatcaatttttatttatatt |
30693343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 8437824 - 8437876
Alignment:
| Q |
186 |
acaaattttaaatcagatacattaatttttgtagattaaattttacttatatt |
238 |
Q |
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| T |
8437824 |
acaaattttgaatcaaatacattaatttttgttgactaaattttacttatatt |
8437876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 9829951 - 9829899
Alignment:
| Q |
186 |
acaaattttaaatcagatacattaatttttgtagattaaattttacttatatt |
238 |
Q |
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|||||||||||| | |||||||||||||||| || ||| ||||||||||||| |
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| T |
9829951 |
acaaattttaaacaaaatacattaatttttgttgactaatttttacttatatt |
9829899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 24788696 - 24788646
Alignment:
| Q |
186 |
acaaattttaaatcagatacattaatttttgtagattaaattttacttata |
236 |
Q |
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|||||||| |||| | |||||||||||||||| |||||| ||||||||||| |
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| T |
24788696 |
acaaatttcaaattaaatacattaatttttgttgattaatttttacttata |
24788646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 24819564 - 24819614
Alignment:
| Q |
186 |
acaaattttaaatcagatacattaatttttgtagattaaattttacttata |
236 |
Q |
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|||||||| |||| | |||||||||||||||| |||||| ||||||||||| |
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| T |
24819564 |
acaaatttcaaattaaatacattaatttttgttgattaatttttacttata |
24819614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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