View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18780_low_19 (Length: 241)
Name: NF18780_low_19
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 9180232 - 9180386
Alignment:
| Q |
1 |
catctctaaactctatcaatcgattataaaatttaataatttaaaaacataacataaataaacccaacttaatagagtaattgatatttaatcaactcct |
100 |
Q |
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| T |
9180232 |
catctctaaactctatcaatcgattataaaatttaataatttaaaaacataacataaataaacccaacttaatagagtaattgatatttaatcaactact |
9180331 |
T |
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| Q |
101 |
atccaataataaattaactaattaattttacaaaaacattataaacattgatgtg |
155 |
Q |
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| T |
9180332 |
atccaataataaattaactaattaattttacaaaaacattataaacattgatgtg |
9180386 |
T |
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