View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18780_low_5 (Length: 494)

Name: NF18780_low_5
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18780_low_5
NF18780_low_5
[»] chr1 (14 HSPs)
chr1 (1-478)||(35148537-35149008)
chr1 (315-420)||(35203096-35203202)
chr1 (315-419)||(35192757-35192861)
chr1 (333-420)||(35272855-35272942)
chr1 (335-419)||(35213519-35213603)
chr1 (337-420)||(45534344-45534427)
chr1 (357-420)||(35476953-35477016)
chr1 (337-420)||(45526140-45526223)
chr1 (334-420)||(35265294-35265380)
chr1 (357-420)||(35145186-35145249)
chr1 (209-272)||(35202992-35203051)
chr1 (357-407)||(35206346-35206396)
chr1 (378-420)||(35216951-35216993)
chr1 (333-419)||(35295239-35295325)
[»] chr7 (1 HSPs)
chr7 (49-87)||(40811883-40811921)


Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 35148537 - 35149008
Alignment:
Q  1 ttggttgtcgcaacaattaggaccaaaaaagaaactatgcttatgaagcattacagatgaaggatcttggtgcttcaagcccaacttttggatggaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35148537 ttggttgtcgcaacaattaggaccaaaaaagaaactatgcttatgaagcattccagatgaaggatcttggtgcttcaagcccaacttttggatggaaaat 35148636  T
Q  101 agattgagtgaagcctgaatagcatctggatttattttgatatatgtcgtggcctagaacaccacgcttgcaccttctgtgcaatcattattcttaacta 200  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35148637 agatgg-gtgaagcctgaatagcatctggatttattttgatatatgtcgtggcctagaacaccacgcttgcaccttctgtgcaatcattattcttaacta 35148735  T
Q  201 taacttggttcataaaggtgtatataactggtaatttagatttaattaattaagttaatcaagacatattggctggtaattatagtcttattaacacggn 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35148736 taacttggttcataaaggtgtatataactggtaatttagatttaattaattaagttaatcaagacatattggctggtaattatagtcttattaacacgg- 35148834  T
Q  301 nnnnnnnnnnnnnntagaaaacttaagatctaagctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctga 400  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35148835 ----aaaaaaaaaatagaaaacttaagatctaagctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctga 35148930  T
Q  401 gagatctagcagaaagcatgcaagactctttctttttatctctttttcgctgcgtttcaagatatcaaaggctttatt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35148931 gagatctagcagaaagcatgcaagactctttctttttatctctttttcgctgcgtttcaagatatcaaaggctttatt 35149008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 315 - 420
Target Start/End: Original strand, 35203096 - 35203202
Alignment:
Q  315 tagaaaacttaa-gatctaagctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcaga 413  Q
    |||||||||||| |||||||||||||||||| |||||||||  ||||||||||||||| || | ||||| |||||||||||||  ||||||||||||||     
T  35203096 tagaaaacttaaagatctaagctaacctggaatcaggcatagcaatccagttccaatatcgatcatcattaccccaagcaatggagagagatctagcagc 35203195  T
Q  414 aagcatg 420  Q
    |||||||    
T  35203196 aagcatg 35203202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 419
Target Start/End: Original strand, 35192757 - 35192861
Alignment:
Q  315 tagaaaacttaagatctaagctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaa 414  Q
    |||||||||||| |||||||||||||| || | |||||||  ||||||||||||||||||   |||||||||||||||||||  |||||||||||||| |    
T  35192757 tagaaaacttaatatctaagctaacctagaattaggcatagaaatccagttccaatagcgtcgatcatcaccccaagcaatggagagagatctagcagca 35192856  T
Q  415 agcat 419  Q
    |||||    
T  35192857 agcat 35192861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 420
Target Start/End: Original strand, 35272855 - 35272942
Alignment:
Q  333 agctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcatg 420  Q
    |||||||||||| |||||||||  ||||||||||||||||||  |||||||||||||| ||||    |||||||||||||||||||||    
T  35272855 agctaacctggaatcaggcatagaaatccagttccaatagcgtctatcatcaccccaaacaattgcaagagatctagcagaaagcatg 35272942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 419
Target Start/End: Original strand, 35213519 - 35213603
Alignment:
Q  335 ctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcat 419  Q
    ||||||| || ||||||| || ||||||||| ||||| || | |||||||||||||||||||| |||||||||||||| ||||||    
T  35213519 ctaacctagaatcaggcacatcaatccagttgcaatatcgatcatcatcaccccaagcaatgccgagagatctagcagcaagcat 35213603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 45534344 - 45534427
Alignment:
Q  337 aacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcatg 420  Q
    |||||||| |||||||||  |||||||||||| ||||| || ||||||||||||| ||||  |||||||||||||| |||||||    
T  45534344 aacctggaatcaggcatagcaatccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatg 45534427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 35476953 - 35477016
Alignment:
Q  357 aatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcatg 420  Q
    ||||||||| ||||| || | |||||||||||||||||||  |||||||||||||| |||||||    
T  35476953 aatccagttgcaatatcgatcatcatcaccccaagcaatggcgagagatctagcagcaagcatg 35477016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 45526140 - 45526223
Alignment:
Q  337 aacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcatg 420  Q
    |||||||| |||||||||  | ||||| |||||||||| | |||||||||||||  ||||  |||||||||||||| |||||||    
T  45526140 aacctggaatcaggcatagcagtccagatccaatagcggtcatcatcaccccaaataatgtggagagatctagcagcaagcatg 45526223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 420
Target Start/End: Original strand, 35265294 - 35265380
Alignment:
Q  334 gctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcatg 420  Q
    ||||||||||| ||||||| |  |||||||||||| ||| |||||  |||||||||| ||||    |||||||||||||||||||||    
T  35265294 gctaacctggaatcaggcaaaggaatccagttccagtagtgcttagtatcaccccaaacaattgcaagagatctagcagaaagcatg 35265380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 35145186 - 35145249
Alignment:
Q  357 aatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcatg 420  Q
    ||||||||| ||||| || | |||||||| ||||||||||  ||||||||||||||||| ||||    
T  35145186 aatccagttgcaatatcgatcatcatcactccaagcaatggcgagagatctagcagaaaccatg 35145249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 35202992 - 35203051
Alignment:
Q  209 ttcataaaggtgtatataactggtaatttagatttaattaattaagttaatcaagacatattgg 272  Q
    |||||||||||||||||||||| ||||| ||    | |||||||||||||| ||||||||||||    
T  35202992 ttcataaaggtgtatataactgttaattaag----agttaattaagttaatgaagacatattgg 35203051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 35206346 - 35206396
Alignment:
Q  357 aatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatct 407  Q
    ||||||||| ||||| || | |||||||||||||||||||| |||||||||    
T  35206346 aatccagttgcaatatcgatcatcatcaccccaagcaatgccgagagatct 35206396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 420
Target Start/End: Original strand, 35216951 - 35216993
Alignment:
Q  378 atcatcaccccaagcaatgctgagagatctagcagaaagcatg 420  Q
    ||||||||| |||||||||  ||||||||||||||||||||||    
T  35216951 atcatcaccgcaagcaatggagagagatctagcagaaagcatg 35216993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 419
Target Start/End: Complemental strand, 35295325 - 35295239
Alignment:
Q  333 agctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcat 419  Q
    |||||||||||| ||| |||||  |||||||||||||| ||||| |   |||||||||  |||  ||||||||||||||| ||||||    
T  35295325 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcat 35295239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 40811883 - 40811921
Alignment:
Q  49 cattacagatgaaggatcttggtgcttcaagcccaactt 87  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  40811883 cattacagatgaatgatcttggtgcttcaagccgaactt 40811921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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