View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18780_low_6 (Length: 479)
Name: NF18780_low_6
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 14738233 - 14738411
Alignment:
| Q |
18 |
ctaattgaataccaacagggtttgagtatctcccataacgtggcgaaccaatgtctgaatctcggctgggagaggtacc-tcattttagtgttgacgtga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
14738233 |
ctaattgaataccaacagggtttgagtatctcctataacgtggcaaaccaatgtctgaatctcggctggaagaggtaccctcattttagtgttgacgtga |
14738332 |
T |
|
| Q |
117 |
attaaataagattacctccaatggtgggaacatatagaaaaccaaaataaaaattgagttatcccactaccatgctttt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14738333 |
attaaataagattacctccaatggtgggaacatatagaaaaccaaaataaaaattgagttatcccactaccatgctttt |
14738411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 14738469 - 14738591
Alignment:
| Q |
207 |
tatatatatatttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14738469 |
tatatatatatttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaggtttggaaacaatgactatttcatttttgtact |
14738568 |
T |
|
| Q |
307 |
tgttaatgaagttgtagtagaat |
329 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14738569 |
tgttaatgaagttgtagtagaat |
14738591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 14739005 - 14739133
Alignment:
| Q |
334 |
tttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgct |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14739005 |
tttttaatatcataacaattgtgtcacttatggtactagcttttaggcataaagtttcaagctaatttctttattattcttttcaaaaaagaatgttgct |
14739104 |
T |
|
| Q |
434 |
ccacttttgagaaatatgcattctttgca |
462 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14739105 |
gcacttttgagaaatatgcattctttgca |
14739133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 188 - 348
Target Start/End: Original strand, 19780662 - 19780820
Alignment:
| Q |
188 |
atgcttttgcaaataattctatatatatatttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatg |
287 |
Q |
| |
|
||||||||| |||||||| ||||| ||| ||||||||||| ||||||||||||||||||||| | ||||||| |||| |||||| ||||||||||||| |
|
|
| T |
19780662 |
atgcttttgtaaataattgtatatgtat--ttgatattcttcttggtttagttttgtttatactagttcaagtttatccaaactaattttggaaacaatg |
19780759 |
T |
|
| Q |
288 |
actatttcatttttgtacttgttaatgaagttgtagtagaatctaatttttaatatcataa |
348 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
19780760 |
gttattacatttttgtacttgataatgatattgtagtataatctattttttaatatcataa |
19780820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 411
Target Start/End: Original strand, 19723520 - 19723704
Alignment:
| Q |
215 |
tatttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatg |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| || ||| | ||||| ||||| || || | ||||| |
|
|
| T |
19723520 |
tatttgatattcttcttggtttagttttgtttataccagttcaagtatattcaaact---------aataattattattttattttggttctagataatg |
19723610 |
T |
|
| Q |
315 |
aagttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattatt |
411 |
Q |
| |
|
| |||||||| ||||||||||| ||||| ||| | ||||||||||| || |||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
19723611 |
atattgtagtaaaatctaatttt---tatcacaaccgtcgtgtcacttattgtgctagattttaggcatcaaggttgaagctaatctctttattatt |
19723704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 456
Target Start/End: Complemental strand, 19886565 - 19886367
Alignment:
| Q |
258 |
agtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaagttgtagtagaatctaatttttaatatcataacaattgtgt |
357 |
Q |
| |
|
|||||||| |||||| |||| | || |||| | ||| ||||||||||||| |||||| ||||||| |||||| |||| |||||||||| | ||| |
|
|
| T |
19886565 |
agtatatccaaactaattttgaacacgatgatttttttatttttgtacttgataatgatattgtagtcaaatctacctttttatatcataactgtcttgt |
19886466 |
T |
|
| Q |
358 |
cacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgctccacttttgagaaatatgcattc |
456 |
Q |
| |
|
||| | ||||| | ||||||||||||||| || ||||| |||||| | ||||| |||||| || |||||| ||| |||||||||| | ||||||||| |
|
|
| T |
19886465 |
cacctgtggtattggcttttaggcatcaaacttgaagctgatttctctcttatttttttcacaatggaatgtggcttcacttttgaggattatgcattc |
19886367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 446
Target Start/End: Original strand, 19781180 - 19781275
Alignment:
| Q |
354 |
gtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttct---ttattattcttttcaaaaaagaatgttgctccacttttgagaa |
446 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| |||| |||||||||||| |||||||| |||||| ||| |||||| ||| |||||||||||| |
|
|
| T |
19781180 |
gtgtcagttatggtactagtttttaggaatcacggttgaagctaatttctttattattatttttttcagaaaggaatgtggcttcacttttgagaa |
19781275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 17588474 - 17588273
Alignment:
| Q |
20 |
aattgaataccaacagggttt-gagtatctcccataacgtggcgaaccaatgtctgaatctcggctgggagaggta-cctcattttagtgttgacg-tga |
116 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |
|
|
| T |
17588474 |
aattgaataccaatagggttttgagtatctcccataacgtggcgaaccaatgtctgaatctcgactgggagaggtatcctcattttagtgttgaccatga |
17588375 |
T |
|
| Q |
117 |
attaaataagattacctccaatggtgggaacatatagaaaa-ccaaaataaaaattgagttatcccactaccatgcttttgcaaataattctatatatat |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17588374 |
agtaaataagattacctccaatggtgggaacctaaaaaaaaaccaaaataaaaattgagttatcccactaccatgcttttgcaaataattatatatatat |
17588275 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
|
|
| T |
17588274 |
at |
17588273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 342 - 476
Target Start/End: Complemental strand, 17587198 - 17587064
Alignment:
| Q |
342 |
atcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgctccactttt |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
17587198 |
atcataacaattgtgtcacttatggtactagcttttaggcatcaagtttcaagctaatttctttattactcttttcaaaaaagaatgttgctgcactttt |
17587099 |
T |
|
| Q |
442 |
gagaaatatgcattctttgcaatattcttcgacat |
476 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||| |
|
|
| T |
17587098 |
gagaaatatgcattctttgcatttttcttctacat |
17587064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 17588195 - 17588119
Alignment:
| Q |
224 |
ttctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttt |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17588195 |
ttctttttggttttgttttgtttataccaatttaagtatatgagaactaagtttggaaacaatgactatttcatttt |
17588119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 325
Target Start/End: Complemental strand, 17587228 - 17587199
Alignment:
| Q |
296 |
atttttgtacttgttaatgaagttgtagta |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17587228 |
atttttgtacttgttaatgaagttgtagta |
17587199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 188 - 411
Target Start/End: Complemental strand, 32577801 - 32577580
Alignment:
| Q |
188 |
atgcttttgcaaataattctatatatatatttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatg |
287 |
Q |
| |
|
||||||||| |||||||| ||||| ||| ||||||||||| ||||||||||||||||||||| | ||||||| |||| |||||| |||||| |||||| |
|
|
| T |
32577801 |
atgcttttgtaaataattgtatatgtat--ttgatattcttcttggtttagttttgtttatactagttcaagtttatccaaactaactttggagacaatg |
32577704 |
T |
|
| Q |
288 |
actatttcatttttgtacttgttaatgaagttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaag |
387 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||| |||||| ||||||||||||||| |||||||| ||||||||||||| |||||| |||| | |
|
|
| T |
32577703 |
gttattacatttttgtacttgataatgatattgtagtataatctattttttaatatcataagcgttgtgtcagttatggtactagcatttaggaatcatg |
32577604 |
T |
|
| Q |
388 |
gttcaagctaatttctttattatt |
411 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
32577603 |
gttggagctaatttctttattatt |
32577580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 12733624 - 12733565
Alignment:
| Q |
352 |
ttgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattatt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
12733624 |
ttgtgtcacttatggtactagcttttaggcatcaaggttgaagctaatttgtttattatt |
12733565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 18912442 - 18912342
Alignment:
| Q |
318 |
ttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttc |
417 |
Q |
| |
|
|||||||||||||||| | |||||||||||| | ||||||| | ||| | | ||||||||||||| ||||| |||||||||||| ||||||| ||||| |
|
|
| T |
18912442 |
ttgtagtagaatctaaactataatatcataaccgtggtgtcacctgtggcattggcttttaggcatcgaggttgaagctaatttctctattattattttc |
18912343 |
T |
|
| Q |
418 |
a |
418 |
Q |
| |
|
| |
|
|
| T |
18912342 |
a |
18912342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 14750376 - 14750408
Alignment:
| Q |
47 |
ctcccataacgtggcgaaccaatgtctgaatct |
79 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
14750376 |
ctcccataacgtggagaaccaatgtctgaatct |
14750408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University