View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18780_low_7 (Length: 453)

Name: NF18780_low_7
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18780_low_7
NF18780_low_7
[»] chr4 (29 HSPs)
chr4 (21-423)||(4609202-4609604)
chr4 (39-233)||(42398471-42398660)
chr4 (21-154)||(24637741-24637877)
chr4 (21-79)||(26510422-26510480)
chr4 (37-83)||(54983110-54983156)
chr4 (104-160)||(54983205-54983261)
chr4 (27-70)||(32006976-32007019)
chr4 (21-84)||(47044459-47044522)
chr4 (50-160)||(28808419-28808528)
chr4 (21-70)||(34409967-34410016)
chr4 (21-70)||(53451070-53451119)
chr4 (21-79)||(34035707-34035765)
chr4 (28-70)||(50561448-50561490)
chr4 (27-79)||(34659085-34659137)
chr4 (194-234)||(54983297-54983337)
chr4 (27-78)||(10727236-10727287)
chr4 (27-78)||(10941005-10941056)
chr4 (21-108)||(19545417-19545504)
chr4 (21-79)||(43317445-43317503)
chr4 (196-234)||(47044306-47044344)
chr4 (21-70)||(23019573-23019622)
chr4 (21-70)||(31135078-31135127)
chr4 (21-78)||(37143508-37143565)
chr4 (21-70)||(40314812-40314861)
chr4 (21-70)||(40324888-40324937)
chr4 (104-160)||(18362865-18362920)
chr4 (111-159)||(19545518-19545566)
chr4 (27-79)||(34334770-34334822)
chr4 (104-160)||(36600006-36600061)
[»] chr1 (33 HSPs)
chr1 (37-175)||(32591280-32591416)
chr1 (37-236)||(15474839-15475037)
chr1 (38-231)||(48420336-48420530)
chr1 (46-137)||(777276-777367)
chr1 (27-80)||(13281209-13281262)
chr1 (104-160)||(18115816-18115872)
chr1 (116-230)||(18115891-18116004)
chr1 (27-70)||(13315386-13315429)
chr1 (37-79)||(23773554-23773596)
chr1 (28-122)||(27579553-27579647)
chr1 (37-70)||(15596784-15596817)
chr1 (195-236)||(25182594-25182635)
chr1 (21-69)||(43416086-43416134)
chr1 (27-102)||(17504360-17504435)
chr1 (190-233)||(27579308-27579351)
chr1 (21-79)||(13309236-13309294)
chr1 (21-79)||(36605709-36605767)
chr1 (37-79)||(42676550-42676592)
chr1 (114-160)||(44066555-44066601)
chr1 (21-62)||(898742-898783)
chr1 (21-70)||(8209624-8209673)
chr1 (21-70)||(17580038-17580087)
chr1 (34-83)||(25222765-25222814)
chr1 (29-151)||(43019772-43019888)
chr1 (190-223)||(43879990-43880023)
chr1 (21-70)||(48455120-48455169)
chr1 (27-79)||(12266770-12266822)
chr1 (104-160)||(25182675-25182731)
chr1 (196-236)||(25222661-25222701)
chr1 (39-83)||(27928599-27928643)
chr1 (191-235)||(32591223-32591267)
chr1 (39-79)||(34555283-34555323)
chr1 (193-237)||(43019928-43019972)
[»] chr7 (32 HSPs)
chr7 (29-159)||(22701633-22701762)
chr7 (38-160)||(48103043-48103165)
chr7 (40-160)||(39522800-39522923)
chr7 (21-235)||(7809624-7809840)
chr7 (37-161)||(39465466-39465594)
chr7 (21-79)||(36251528-36251586)
chr7 (40-160)||(27484357-27484466)
chr7 (21-70)||(39786364-39786413)
chr7 (27-79)||(4785646-4785698)
chr7 (27-79)||(4818646-4818698)
chr7 (27-83)||(14553676-14553732)
chr7 (190-230)||(29693294-29693334)
chr7 (28-83)||(1460418-1460473)
chr7 (116-175)||(24034498-24034557)
chr7 (37-79)||(17038346-17038388)
chr7 (39-70)||(3531001-3531032)
chr7 (21-80)||(9334531-9334590)
chr7 (27-78)||(27724956-27725007)
chr7 (37-80)||(29693223-29693266)
chr7 (21-79)||(19396870-19396928)
chr7 (21-79)||(30908436-30908494)
chr7 (21-79)||(48109470-48109528)
chr7 (37-70)||(4996126-4996159)
chr7 (21-70)||(7468647-7468696)
chr7 (21-70)||(9412447-9412496)
chr7 (37-70)||(15994432-15994465)
chr7 (21-70)||(25834354-25834403)
chr7 (28-69)||(26710378-26710419)
chr7 (21-70)||(27250553-27250602)
chr7 (21-70)||(27723083-27723132)
chr7 (39-80)||(40417373-40417414)
chr7 (41-69)||(12328376-12328404)
[»] chr5 (18 HSPs)
chr5 (37-175)||(30841202-30841337)
chr5 (21-167)||(35583297-35583443)
chr5 (111-172)||(25536539-25536600)
chr5 (37-160)||(26620979-26621104)
chr5 (21-78)||(19288990-19289047)
chr5 (27-69)||(16312817-16312859)
chr5 (27-79)||(28400189-28400241)
chr5 (44-135)||(38098946-38099038)
chr5 (28-79)||(25536460-25536511)
chr5 (27-81)||(1093642-1093696)
chr5 (21-79)||(1612169-1612227)
chr5 (21-79)||(8839666-8839724)
chr5 (186-236)||(25536617-25536666)
chr5 (21-78)||(7464281-7464338)
chr5 (38-79)||(15341479-15341520)
chr5 (21-70)||(27174997-27175046)
chr5 (192-225)||(35583236-35583269)
chr5 (30-70)||(10542847-10542887)
[»] chr2 (21 HSPs)
chr2 (21-154)||(31555615-31555746)
chr2 (21-83)||(17640957-17641019)
chr2 (92-160)||(17874429-17874497)
chr2 (35-70)||(19133173-19133208)
chr2 (40-79)||(27912913-27912952)
chr2 (28-79)||(37867467-37867518)
chr2 (28-79)||(39809261-39809312)
chr2 (28-79)||(40301797-40301848)
chr2 (21-80)||(42444399-42444458)
chr2 (21-83)||(5879977-5880038)
chr2 (106-160)||(17873069-17873123)
chr2 (21-83)||(42651710-42651772)
chr2 (21-70)||(15248975-15249024)
chr2 (21-70)||(16039174-16039223)
chr2 (21-70)||(29462612-29462661)
chr2 (39-83)||(740906-740950)
chr2 (37-69)||(3171647-3171679)
chr2 (190-218)||(17640816-17640844)
chr2 (27-79)||(21566032-21566084)
chr2 (27-79)||(25915377-25915429)
chr2 (21-77)||(33134906-33134962)
[»] chr8 (20 HSPs)
chr8 (37-175)||(9788575-9788708)
chr8 (21-160)||(9187392-9187530)
chr8 (37-160)||(24411925-24412048)
chr8 (104-237)||(32345154-32345285)
chr8 (104-237)||(32361762-32361893)
chr8 (21-79)||(11929810-11929868)
chr8 (21-79)||(11941425-11941483)
chr8 (21-79)||(15044473-15044531)
chr8 (21-226)||(31267895-31268096)
chr8 (112-160)||(37370069-37370117)
chr8 (28-79)||(4535793-4535844)
chr8 (28-79)||(42862472-42862523)
chr8 (21-79)||(13369336-13369394)
chr8 (37-78)||(1759738-1759779)
chr8 (21-78)||(16822922-16822979)
chr8 (21-78)||(28969827-28969884)
chr8 (196-236)||(9187569-9187609)
chr8 (27-67)||(13575748-13575788)
chr8 (27-83)||(16243549-16243605)
chr8 (39-79)||(23085788-23085828)
[»] scaffold1017 (1 HSPs)
scaffold1017 (21-160)||(2344-2484)
[»] scaffold0092 (1 HSPs)
scaffold0092 (39-160)||(6515-6637)
[»] chr6 (14 HSPs)
chr6 (37-167)||(14912171-14912301)
chr6 (21-79)||(13240894-13240952)
chr6 (21-160)||(4965643-4965783)
chr6 (37-160)||(19707486-19707612)
chr6 (21-79)||(23124256-23124314)
chr6 (27-70)||(26306456-26306499)
chr6 (22-78)||(2441258-2441314)
chr6 (190-233)||(4965556-4965599)
chr6 (21-79)||(9894596-9894654)
chr6 (21-79)||(14426431-14426489)
chr6 (21-79)||(17942294-17942352)
chr6 (197-233)||(14912079-14912115)
chr6 (27-79)||(17829620-17829672)
chr6 (26-70)||(30591104-30591148)
[»] chr3 (17 HSPs)
chr3 (21-84)||(14770949-14771012)
chr3 (45-160)||(21082630-21082747)
chr3 (21-139)||(21967210-21967319)
chr3 (21-139)||(21989646-21989755)
chr3 (21-79)||(23267847-23267905)
chr3 (112-236)||(13475398-13475524)
chr3 (28-80)||(21495407-21495459)
chr3 (27-79)||(49758590-49758642)
chr3 (21-79)||(19468231-19468289)
chr3 (27-64)||(49429993-49430030)
chr3 (127-175)||(14770866-14770914)
chr3 (21-78)||(17589983-17590040)
chr3 (21-78)||(18875278-18875335)
chr3 (39-84)||(20838039-20838084)
chr3 (21-70)||(45879614-45879663)
chr3 (27-79)||(7791453-7791505)
chr3 (35-79)||(30806075-30806119)
[»] scaffold0013 (2 HSPs)
scaffold0013 (21-124)||(101338-101441)
scaffold0013 (127-175)||(101474-101522)
[»] scaffold0154 (1 HSPs)
scaffold0154 (21-79)||(32809-32867)
[»] scaffold0029 (1 HSPs)
scaffold0029 (116-160)||(72715-72759)
[»] scaffold0734 (1 HSPs)
scaffold0734 (21-83)||(4200-4262)
[»] scaffold0128 (1 HSPs)
scaffold0128 (37-79)||(43308-43350)
[»] scaffold0068 (1 HSPs)
scaffold0068 (39-79)||(57295-57335)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 423
Target Start/End: Original strand, 4609202 - 4609604
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  4609202 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcaaattttatatgtctgaatttttcgttatcattta 4609301  T
Q  121 aaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaannnnnnnnnngtttccacacaaaatatatcgtgtaacaaacatga 220  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||          ||||||||||||||||||| |||| | ||||||||    
T  4609302 aaaaagataatggataagagtgaatttaaatatttaaaaaatgtaacgaacataattttttttttgtttccacacaaaatatattgtgttaaaaacatga 4609401  T
Q  221 tatgaatatatgtccaannnnnnncatttatccttnnnnnnnctgtaacaaactaaatcaagtatattccatcgcaaaagcattttgatttcccaattcc 320  Q
    ||||||||||||||||        |||||||||||         ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4609402 tatgaatatatgtccagtttttttcatttatccttaaaaaaaacgtaacaaactagatcaagtatattccatcgcaaaagcattttgatttcccaattcc 4609501  T
Q  321 atgtgagctttgataataagtactttgtatgttccaatttggtttcgcgttgctcttccatgaatggtttcacgatgctgccttttccatcgatactctc 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4609502 atgtgagctttgataataagtactttgtatgttccaatttggtttcacgatgctcttccatgaatggtttcacgatgctgccttttccatcgatactctc 4609601  T
Q  421 tct 423  Q
    |||    
T  4609602 tct 4609604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 233
Target Start/End: Complemental strand, 42398660 - 42398471
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatgag 138  Q
    |||||||||||||||||||  ||| ||||||| |||||||||||| |  ||||| ||||||||| |||||  |||| ||||||||||||||||  | |||    
T  42398660 ataacaaatagataagagtgtatttaaatattaaaacaaaatgtaacaaattttgtatgtctgatttttttcttataatttaaaaaagataattaaagag 42398561  T
Q  139 agtgaatttaaatattgaaaaagtgtaacgaacacaannnnnnnnnngtttccacacaaaatatatcgtgtaacaaacatgatatgaatatatgt 233  Q
    |||| ||| ||||||  ||||| |||||| ||||||            || |||||||||||||||||||| ||||||| ||||||| |||||||    
T  42398560 agtggattcaaatatcaaaaaaatgtaacaaacaca-----cttttttttgccacacaaaatatatcgtgtgacaaacacgatatgagtatatgt 42398471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 24637741 - 24637877
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttt-tcattatcattt 119  Q
    ||||| |||||| || ||| |||||||||||||||||||||||||||||| ||||  |||||| |  ||| ||||| ||||| |||| || |||||||||    
T  24637741 tcaatacaaataacacatacaacaaatagataagagtaaattcaaatattgaaacccaatgtaacaaattgtatatctctgatttttatccttatcattt 24637840  T
Q  120 aaaaaagataatgga--tgagagtgaatttaaatatt 154  Q
    |||||||||| ||||  ||||| |||||| |||||||    
T  24637841 aaaaaagatagtggatgtgagaatgaattcaaatatt 24637877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 26510480 - 26510422
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  26510480 tcaatacaaatatcacatataacaaatagataagagtaaattcaaatattaaaataaaa 26510422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 54983110 - 54983156
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  54983110 atataacaaatagataagagtaaattcaaatattaaaacaaaatgta 54983156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 54983205 - 54983261
Alignment:
Q  104 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  54983205 tttttccttatcatttaaaaaagataatggatgagagttaattcaaatattaaaaaa 54983261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 32007019 - 32006976
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  32007019 caaataacatatataacaaatagataagagtaaattcaaatatt 32006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 47044522 - 47044459
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtat 84  Q
    ||||| |||||| || |||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  47044522 tcaatacaaatagcacatataacaaatatataagagtaaattcaaatattaaaacaaattgtat 47044459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 28808419 - 28808528
Alignment:
Q  50 ataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatgagagtgaatttaa 149  Q
    ||||||| ||||||||||||| ||||||| ||||    | | |||||||| |  |||||| ||||||||||||||||||||||||||| ||| |||| ||    
T  28808419 ataagagaaaattcaaatattaaaacaaa-tgtaataaactgtatatgtccgtttttttccttatcatttaaaaaagataatggatgaaagtaaattcaa 28808517  T
Q  150 atattgaaaaa 160  Q
    ||||| |||||    
T  28808518 atattaaaaaa 28808528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 34410016 - 34409967
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  34410016 tcaatacaaataacacatataacaaatagataagagtaaattcaaatatt 34409967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 53451070 - 53451119
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  53451070 tcaatacaaataacacatataacaaatagataagagtaaattcaaatatt 53451119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 34035707 - 34035765
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||||||||| || ||||||||||||||||||  |||||||||||||| ||| ||||    
T  34035707 tcaattcaaataacacatataacaaatagataaggataaattcaaatattaaaataaaa 34035765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 50561490 - 50561448
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  50561490 aaatatcatatataataaatagataagagtaaatttaaatatt 50561448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 34659085 - 34659137
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || |||||||||||||||||| ||||||||||||||| ||| ||||    
T  34659085 caaataacacatataacaaatagataagtgtaaattcaaatattgaaataaaa 34659137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 54983297 - 54983337
Alignment:
Q  194 acaaaatatatcgtgtaacaaacatgatatgaatatatgtc 234  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  54983297 acaaaatatatcgtgtaacaaacacgatattaatatatgtc 54983337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 10727236 - 10727287
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    |||||| ||||| ||||||||| ||||||||||||| ||||||| |||||||    
T  10727236 caaataacatatgtaacaaatatataagagtaaatttaaatattaaaacaaa 10727287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 10941005 - 10941056
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    |||||| ||||| ||||||||| ||||||||||||| ||||||| |||||||    
T  10941005 caaataacatatgtaacaaatatataagagtaaatttaaatattaaaacaaa 10941056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 19545417 - 19545504
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaattttt 108  Q
    ||||| |||||| || |||||| ||||| ||||||||||||| ||||||| ||| |||||||| |  | | ||||||||||| |||||    
T  19545417 tcaatgcaaatagcacatataagaaatatataagagtaaatttaaatattaaaataaaatgtaacaaactgtatatgtctgatttttt 19545504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 43317445 - 43317503
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || || |||||||||||||||| |||||| ||||||| ||||||||    
T  43317445 tcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaaa 43317503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 47044344 - 47044306
Alignment:
Q  196 aaaatatatcgtgtaacaaacatgatatgaatatatgtc 234  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  47044344 aaaatatatcgtataacaaacatgatatgagtatatgtc 47044306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 23019622 - 23019573
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  23019622 tcaatacaaataacacatataacaaatagataagaataaatttaaatatt 23019573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 31135078 - 31135127
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| ||||||||| || |||||||||||||||| |||||| |||||||    
T  31135078 tcaatacaaatatcacatgtaacaaatagataagaataaatttaaatatt 31135127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 37143565 - 37143508
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    ||||| |||||| || || |||||||||||||||| |||||| ||||||| |||||||    
T  37143565 tcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaa 37143508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 40314861 - 40314812
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  40314861 tcaatacaaataacacatataacaaatagataagaataaatttaaatatt 40314812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 40324937 - 40324888
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  40324937 tcaatacaaataacacatataacaaatagataagaataaatttaaatatt 40324888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 18362920 - 18362865
Alignment:
Q  104 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||| |||||||||||||| ||||| ||||||||||||||| || |||| |||||    
T  18362920 tttttccttatcatttaaaaa-gataacggatgagagtgaattcaactattaaaaaa 18362865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 19545518 - 19545566
Alignment:
Q  111 ttatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaa 159  Q
    |||||||| ||| ||||||||||||||| ||||||| ||||||| ||||    
T  19545518 ttatcattcaaagaagataatggatgagtgtgaattcaaatattaaaaa 19545566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 34334770 - 34334822
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || |||||| |||||||||| |||||||||||||||| ||| ||||    
T  34334770 caaataacaaatataataaatagataaaagtaaattcaaatattaaaataaaa 34334822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 36600006 - 36600061
Alignment:
Q  104 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||| |||||||||||||| ||||| ||||||||||||||| || |||| |||||    
T  36600006 tttttccttatcatttaaaaa-gataacggatgagagtgaattcaactattaaaaaa 36600061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 32591416 - 32591280
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 136  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||    |||||||||||  || |||||| ||||||||||||||| ||||||||||    
T  32591416 atataacaaatagataaaagtaaattcaaatattaaaacaaaatgtaataaattttatatgttcgattttttctttatcatttaaaaaa-ataatggatg 32591318  T
Q  137 agagtgaatttaaatattgaaaaagtgtaacgaacacaa 175  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  32591317 agagtgaatttaaatatt-aaaaagtgtaacaaacacaa 32591280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 15474839 - 15475037
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 136  Q
    |||||| ||||| |||||| |||||| ||||||| |||||||||||| |  ||| |||||||| || |||||| |||||||||||||| ||||| |||||    
T  15474839 atataagaaatatataagaataaatttaaatattaaaacaaaatgtaacaaattatatatgtccgattttttccttatcatttaaaaatgataacggatg 15474938  T
Q  137 agagtgaatttaaatattgaaaaagtgtaacgaacacaannnnnnnnnngtttccacacaaaatatatcgtgtaacaaacatgatatgaatatatgtcca 236  Q
    |||||||||| ||||||| ||||| | |||| |||||||          | | | ||| ||||||||||||||||||||||||||||||  |||||||||    
T  15474939 agagtgaattcaaatattaaaaaaat-taacaaacacaatattatttttggtacaacaaaaaatatatcgtgtaacaaacatgatatgagcatatgtcca 15475037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 231
Target Start/End: Original strand, 48420336 - 48420530
Alignment:
Q  38 tataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgt-ctgaatttttcattatcattt-aaaaaagataatggat 135  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |  ||   |||||| |    |||||| ||||||||| ||||||||||||||||    
T  48420336 tataacaaatagataagagtaaattcaaatattaaaacaaaatgtaacagatagcatatgtccattttttttccttatcatttaaaaaaagataatggat 48420435  T
Q  136 gagagtgaatttaaatatt-gaaaaagtgtaacgaacacaannnnnnnnnngtttccacacaaaatatatcgtgtaacaaacatgatatgaatatat 231  Q
    |||||  || | |||||||  |||||||||||| |||| ||          ||| ||| |||||||||||||||||||||||| ||||||| |||||    
T  48420436 gagagcaaagtcaaatattaaaaaaagtgtaacaaacataa--ttttttttgttaccagacaaaatatatcgtgtaacaaacacgatatgagtatat 48420530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 777367 - 777276
Alignment:
Q  46 atagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatga 137  Q
    |||||||| |||||||||||||||| |||||||||||| |  | | ||||| || || |||||| ||||||||||||||| |||||||||||    
T  777367 atagataaaagtaaattcaaatattaaaacaaaatgtaacaaactatatatatccgattttttctttatcatttaaaaaaaataatggatga 777276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 13281262 - 13281209
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaat 80  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  13281262 caaatatcatatataacaaataaataagagtaaattcaaatattaaaataaaat 13281209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 18115816 - 18115872
Alignment:
Q  104 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  18115816 tttttcctcatcattcaaaaaagataatggatgagagtgaatttaaatattaaaaaa 18115872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 18115891 - 18116004
Alignment:
Q  116 atttaaaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaannnnnnnnnngtttccacacaaaatatatcgtgtaacaaa 215  Q
    ||||||||||||||||||||||||||||||| |||||   ||||| | |||| ||||| |          ||| ||||||||||||||||||||||||||    
T  18115891 atttaaaaaagataatggatgagagtgaattcaaatagaaaaaaaatctaacaaacactattatttttt-gttgccacacaaaatatatcgtgtaacaaa 18115989  T
Q  216 catgatatgaatata 230  Q
    || ||||||||||||    
T  18115990 cacgatatgaatata 18116004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 13315429 - 13315386
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  13315429 caaataacatatataacaaatagataagagtaaatttaaatatt 13315386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 23773596 - 23773554
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  23773596 atataacaaatagataagagtaaattcaaatattaaaataaaa 23773554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 27579647 - 27579553
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaa 122  Q
    ||||| || |||||| |||||||||||||| |||| ||||||| || ||||||||| |  | | |||||||| || |||||| ||||||||||||    
T  27579647 aaataacacatataataaatagataagagtgaatttaaatattaaagcaaaatgtaacaaactgtatatgtccgattttttccttatcatttaaa 27579553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 15596784 - 15596817
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatatt 70  Q
    ||||||||||||||||||||||||||||||||||    
T  15596784 atataacaaatagataagagtaaattcaaatatt 15596817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 25182635 - 25182594
Alignment:
Q  195 caaaatatatcgtgtaacaaacatgatatgaatatatgtcca 236  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  25182635 caaaatatatcgtgtaataaacatgatatgagtatatgtcca 25182594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 43416134 - 43416086
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatat 69  Q
    ||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  43416134 tcaatgcaaataacacatataacaaattgataagagtaaattcaaatat 43416086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 17504360 - 17504435
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctga 102  Q
    |||||| || ||||||||||||||||| | |||| ||||||||| ||| |||||||| |  ||| |||||||||||    
T  17504360 caaataacacatataacaaatagataaaaataaactcaaatattaaaataaaatgtaacaaattgtatatgtctga 17504435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 27579351 - 27579308
Alignment:
Q  190 ccacacaaaatatatcgtgtaacaaacatgatatgaatatatgt 233  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||    
T  27579351 ccacacaaaatatatcgtgcaacaaacataatatgagtatatgt 27579308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 13309236 - 13309294
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||| ||||||||||||| ||||||||||||| ||| ||||    
T  13309236 tcaatacaaataacacatataataaatagataagagaaaattcaaatattaaaataaaa 13309294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 36605767 - 36605709
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||||||||||||||||| |||| |||||||| ||| ||||    
T  36605767 tcaatacaaataacacatataacaaatagataagaggaaatgcaaatattaaaataaaa 36605709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 42676550 - 42676592
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||    
T  42676550 atataacaaatagataagggtaaattcaaatattaaaataaaa 42676592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 44066601 - 44066555
Alignment:
Q  114 tcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||    
T  44066601 tcatttaaaaaagataacagatgagagtgaattcaaatattaaaaaa 44066555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 898742 - 898783
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaatt 62  Q
    ||||| |||||| || ||||||||||||||||||||||||||    
T  898742 tcaatacaaatagcacatataacaaatagataagagtaaatt 898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 8209673 - 8209624
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || |||||||||||| |||||| ||||||||||||||    
T  8209673 tcaatacaaatagcacatataacaaatacataagaataaattcaaatatt 8209624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 17580087 - 17580038
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| ||||| |||||||||||||||| |||||| |||||||    
T  17580087 tcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt 17580038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 25222814 - 25222765
Alignment:
Q  34 catatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    ||||||||||||| |||||||  |||||||||||||| || |||||||||    
T  25222814 catatataacaaacagataagtataaattcaaatattaaaccaaaatgta 25222765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 43019772 - 43019888
Alignment:
Q  29 aatatcatatataacaaatagataagagtaaattcaaa---tattcaaacaaaatgtatcctattttatatgtctga-atttttcattatcatttaaaaa 124  Q
    ||||||| |||||| ||||||||||||||||||| |||   |||| ||||||||||          |||||||||||  |||||  ||||||||||||||    
T  43019772 aatatcacatataataaatagataagagtaaatttaaatactattaaaacaaaatg----------tatatgtctgatttttttgcttatcatttaaaaa 43019861  T
Q  125 agataatggatgagagtgaatttaaat 151  Q
    | ||||| |||||||||||||| ||||    
T  43019862 aaataattgatgagagtgaattcaaat 43019888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 43879990 - 43880023
Alignment:
Q  190 ccacacaaaatatatcgtgtaacaaacatgatat 223  Q
    |||||||||||||||||||||||||||| |||||    
T  43879990 ccacacaaaatatatcgtgtaacaaacacgatat 43880023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 48455120 - 48455169
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    |||||||||||| ||||| | |||||||||||||| |||||| |||||||    
T  48455120 tcaattcaaataacatatgtgacaaatagataagaataaatttaaatatt 48455169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 12266770 - 12266822
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || |||||||||||||||||||||||| | ||||||| ||| ||||    
T  12266770 caaataacacatataacaaatagataagagtaaacttaaatattaaaataaaa 12266822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 25182731 - 25182675
Alignment:
Q  104 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||| ||||||||||||||||||||| ||||| || ||||| |||| || |||||    
T  25182731 tttttccttatcatttaaaaaagataatagatgaaagcgaattcaaatgttaaaaaa 25182675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 25222701 - 25222661
Alignment:
Q  196 aaaatatatcgtgtaacaaacatgatatgaatatatgtcca 236  Q
    |||||||||||||||| ||||||||||||  ||||||||||    
T  25222701 aaaatatatcgtgtaataaacatgatatgtgtatatgtcca 25222661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 27928643 - 27928599
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    |||||||||| ||||||||||||| ||||||| ||| ||||||||    
T  27928643 ataacaaataaataagagtaaattaaaatattaaaaaaaaatgta 27928599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 32591267 - 32591223
Alignment:
Q  191 cacacaaaatatatcgtgtaacaaacatgatatgaatatatgtcc 235  Q
    |||||||||||| ||  |||||||||| |||||||||||||||||    
T  32591267 cacacaaaatatttcaagtaacaaacacgatatgaatatatgtcc 32591223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 34555283 - 34555323
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||||||| ||||||||||||||||||||| ||| ||||    
T  34555283 ataacaaatacataagagtaaattcaaatattaaaataaaa 34555323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 43019928 - 43019972
Alignment:
Q  193 cacaaaatatatcgtgtaacaaacatgatatgaatatatgtccaa 237  Q
    ||||||||||||| |||||| | || |||||||||||||||||||    
T  43019928 cacaaaatatatcatgtaacgagcacgatatgaatatatgtccaa 43019972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 22701633 - 22701762
Alignment:
Q  29 aatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagat 128  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |  ||| ||||||||||  |||||| ||||| ||||||||||||    
T  22701633 aatatcacatataacaaatagataagagtaaattcaaatattaaaataaaatgtaacaaattgtatatgtctg-ttttttccttatcgtttaaaaaagat 22701731  T
Q  129 aatggatgagagtgaatttaaatattgaaaa 159  Q
    |||||||||||||||||| ||||||| ||||    
T  22701732 aatggatgagagtgaattcaaatatttaaaa 22701762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 48103043 - 48103165
Alignment:
Q  38 tataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatga 137  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||  |  ||| ||||| ||  | |||||| ||||||||| ||||||||||| || ||    
T  48103043 tataaaaaatagataagagtaaattcaaatattaaaacaaaatgtgacaaattatatatatcctattttttccttatcattttaaaaagataatagacga 48103142  T
Q  138 gagtgaatttaaatattgaaaaa 160  Q
    ||||||||| ||||||| |||||    
T  48103143 gagtgaattcaaatattaaaaaa 48103165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 39522800 - 39522923
Alignment:
Q  40 taacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctg---aatttttcattatcatttaaaaaagataatggatg 136  Q
    |||||||||||||||||||| |||||||||  |||||||||||| | |||| ||||| ||||   | |||||| || |||||||||||||| ||||||||    
T  39522800 taacaaatagataagagtaatttcaaatatcaaaacaaaatgtaacatattgtatatttctgattattttttccttttcatttaaaaaagacaatggatg 39522899  T
Q  137 agagtgaatttaaatattgaaaaa 160  Q
    | |||||||| ||||||| |||||    
T  39522900 aaagtgaattcaaatattaaaaaa 39522923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 7809624 - 7809840
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatccta----ttttatatgtctgaatttttcattatca 116  Q
    ||||| ||||||  |||||||||||| ||||||||||||||| ||||||| ||| ||||| || |  |    || ||||| ||||| |||||| ||||||    
T  7809624 tcaatacaaataatatatataacaaacagataagagtaaatttaaatattaaaa-aaaatataacaaacaaattctatatatctgattttttccttatca 7809722  T
Q  117 tttaaaaaagataatggatgagagtgaatttaaatattgaaaaa-gtgtaacgaacacaannnnnnnnnngtttccacacaaaatatatcgtgtaacaaa 215  Q
    |||||||||||||| |||||||| |||||||||||||| |||||  |||||  |||||||          ||| || |||||||||||| ||||||||||    
T  7809723 tttaaaaaagataaaggatgagactgaatttaaatattaaaaaatttgtaataaacacaa--ttgtttttgttaccgcacaaaatatatggtgtaacaaa 7809820  T
Q  216 catgatatgaatatatgtcc 235  Q
    ||| |||||| |||||||||    
T  7809821 cataatatgagtatatgtcc 7809840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 39465594 - 39465466
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaattttt----cattatcatttaaaaaagataatg 132  Q
    ||||||||||||||||| |||||||||||||||| |||| |||| |     ||| ||||||| ||| |||||    | ||||||||||||||||||||||    
T  39465594 atataacaaatagataaaagtaaattcaaatattaaaacgaaatcttaaaaattgtatatgtttgattttttttttccttatcatttaaaaaagataatg 39465495  T
Q  133 gatgagagtgaatttaaatattgaaaaag 161  Q
     | ||||||||||| ||||||| ||||||    
T  39465494 tacgagagtgaattcaaatattaaaaaag 39465466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 36251528 - 36251586
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  36251528 tcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 36251586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 27484466 - 27484357
Alignment:
Q  40 taacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatgaga 139  Q
    |||||||||||||||| |||||||||||||| ||||||||||          ||| |||| || |||||| ||||| ||||||||||||||||||||| |    
T  27484466 taacaaatagataagattaaattcaaatattaaaacaaaatg----------tatgtgtccgattttttc-ttatcgtttaaaaaagataatggatgaaa 27484378  T
Q  140 gtgaatttaaatattgaaaaa 160  Q
    || |||| ||||||| |||||    
T  27484377 gtaaattcaaatattaaaaaa 27484357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 39786364 - 39786413
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  39786364 tcaatacaaataacacatataacaaatagataagagtaaattcaaatatt 39786413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 4785698 - 4785646
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||| ||||    
T  4785698 caaatagcacatataataaatagataagagtaaattcaaatattcaaataaaa 4785646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 4818698 - 4818646
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||| ||||    
T  4818698 caaatagcacatataataaatagataagagtaaattcaaatattcaaataaaa 4818646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 14553732 - 14553676
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    |||||| || ||||||||||||||||| |||||||||||||||||||| | ||||||    
T  14553732 caaatagcacatataacaaatagataaaagtaaattcaaatattcaaaaataatgta 14553676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 29693294 - 29693334
Alignment:
Q  190 ccacacaaaatatatcgtgtaacaaacatgatatgaatata 230  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  29693294 ccacacaaaatatatcgtgtaacaaacacgatatgaatata 29693334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 1460418 - 1460473
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    ||||| || |||||||||||| |||| |||||||||||||||| ||||||||||||    
T  1460418 aaataacacatataacaaatatataatagtaaattcaaatatttaaacaaaatgta 1460473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 24034557 - 24034498
Alignment:
Q  116 atttaaaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaa 175  Q
    |||||||||| |||||| ||||||| ||||| ||||||| |||||||||||| |||||||    
T  24034557 atttaaaaaatataatgaatgagagcgaattcaaatattaaaaaagtgtaacaaacacaa 24034498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 17038346 - 17038388
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  17038346 atataacaaatagataagagtaaattcaaatattaaaataaaa 17038388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 3531001 - 3531032
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatatt 70  Q
    ||||||||||||||||||||||||||||||||    
T  3531001 ataacaaatagataagagtaaattcaaatatt 3531032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 9334531 - 9334590
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaat 80  Q
    ||||| ||||||  ||||||||||||||||||| |||| ||||||||||| ||| |||||    
T  9334531 tcaatacaaataatatatataacaaatagataaaagtagattcaaatattaaaagaaaat 9334590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 27725007 - 27724956
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    |||||| ||||| |||||||||||||||| |||||| ||||||| |||||||    
T  27725007 caaataacatatgtaacaaatagataagaataaatttaaatattaaaacaaa 27724956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 29693223 - 29693266
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaat 80  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||    
T  29693223 atataacgaatagatgagagtaaattcaaatattaaaacaaaat 29693266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 19396870 - 19396928
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||||||||| || || |||||||||||||||| |||||| ||||||| ||| ||||    
T  19396870 tcaattcaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 19396928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 30908436 - 30908494
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||| |||||||||| |||||||||||||||| ||| ||||    
T  30908436 tcaatacaaataacacatataataaatagataaaagtaaattcaaatattaaaataaaa 30908494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 48109470 - 48109528
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| ||||| ||| |||||||||| | |||||||||||||||||| ||||    
T  48109470 tcaatacaaataacatatttaaaaaatagataaaaataaattcaaatattcaaataaaa 48109528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 4996126 - 4996159
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatatt 70  Q
    |||||||||||||||||||||||||| |||||||    
T  4996126 atataacaaatagataagagtaaatttaaatatt 4996159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 7468647 - 7468696
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| ||||| |||||||||||||||| |||||| |||||||    
T  7468647 tcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt 7468696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 9412447 - 9412496
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  9412447 tcaatacaaataacacatataacaaatagataagaataaatttaaatatt 9412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 15994465 - 15994432
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatatt 70  Q
    ||||||||||||||||| ||||||||||||||||    
T  15994465 atataacaaatagataaaagtaaattcaaatatt 15994432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 25834354 - 25834403
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| ||||| |||||||||||||||| |||||| |||||||    
T  25834354 tcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt 25834403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 26710419 - 26710378
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatat 69  Q
    ||||| || ||||||||||||||||||| |||||||||||||    
T  26710419 aaataacacatataacaaatagataagaataaattcaaatat 26710378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 27250553 - 27250602
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  27250553 tcaatacaaataacacatataacaaatagataagaataaatttaaatatt 27250602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 27723132 - 27723083
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| ||||| |||||||||||||||| |||||| |||||||    
T  27723132 tcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt 27723083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 40417373 - 40417414
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaat 80  Q
    ||||||||||||||||||||||| |||||||| ||| |||||    
T  40417373 ataacaaatagataagagtaaatgcaaatattaaaataaaat 40417414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 12328404 - 12328376
Alignment:
Q  41 aacaaatagataagagtaaattcaaatat 69  Q
    |||||||||||||||||||||||||||||    
T  12328404 aacaaatagataagagtaaattcaaatat 12328376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 30841337 - 30841202
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 136  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||| |  ||| ||||||||||| |||||  ||| ||||||||||||||||||||||    
T  30841337 atataacaaatag-taagagtaaatttaaatattaaaacaaaatgtaacaaattgtatatgtctgattttttt-ttaccatttaaaaaagataatggatg 30841240  T
Q  137 agagtgaatttaaatattgaaaaagtgtaacgaacacaa 175  Q
    | |||||||| ||||||| |||||||||||| |||||||    
T  30841239 acagtgaattcaaatatt-aaaaagtgtaacaaacacaa 30841202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 35583443 - 35583297
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 120  Q
    ||||| |||||| || |||||||||| |||||||| ||||||||||||||  ||||||||||| |    | | ||||||    |||||| |||| |||||    
T  35583443 tcaatacaaataacacatataacaaaaagataagattaaattcaaatattataacaaaatgtaacaagctgtttatgtccatttttttccttattattta 35583344  T
Q  121 aaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaac 167  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  35583343 aaaaagataatggatgagaatgaattcaaatattaaaaaagtgtaac 35583297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 25536539 - 25536600
Alignment:
Q  111 ttatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaagtgtaacgaaca 172  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||| ||||    
T  25536539 ttatcatttaaaaaagataatagatgagagtgaattcaaatattaaaaaaatgtaacaaaca 25536600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 26621104 - 26620979
Alignment:
Q  37 atataacaaatagataagagtaaattcaaata-ttcaaacaaaatgtatcctattttatatgtctgaattttt-cattatcatttaaaaaagataatgga 134  Q
    |||||||||||| |||| |||||||  ||| | || ||||||||||||    ||| ||||||||||| ||||| | ||||||||||||||||||||||||    
T  26621104 atataacaaatatataacagtaaataaaaaaaattaaaacaaaatgtaaaaaattgtatatgtctgatttttttccttatcatttaaaaaagataatgga 26621005  T
Q  135 tgagagtgaatttaaatattgaaaaa 160  Q
    | |||| ||||| ||||||| |||||    
T  26621004 taagagagaattcaaatattaaaaaa 26620979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 19289047 - 19288990
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    ||||| |||||| |||||||||||||||||||||| |||||| ||||||| |||||||    
T  19289047 tcaatacaaataacatatataacaaatagataagaataaatttaaatattaaaacaaa 19288990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 16312817 - 16312859
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatat 69  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  16312817 caaataacatatataacaaatagataaaagtaaattcaaatat 16312859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 28400189 - 28400241
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| ||||||||||| |||||||| |||||||||||||||| ||| ||||    
T  28400189 caaataacatatataacatatagataaaagtaaattcaaatattaaaaaaaaa 28400241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 38099038 - 38098946
Alignment:
Q  44 aaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaattttt-cattatcatttaaaaaagataatggat 135  Q
    ||||||||||||||||||||||||||| ||| |||||||| |  ||  ||||| ||  | ||||| | ||||| |||||||||||||||||||    
T  38099038 aaatagataagagtaaattcaaatattaaaataaaatgtaacgaatcatatatatccaattttttcccttatcgtttaaaaaagataatggat 38098946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 25536460 - 25536511
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| || |||||||||||| |||||| |||||||||||||| ||||||||    
T  25536460 aaataacacatataacaaataaataagaataaattcaaatattaaaacaaaa 25536511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 1093642 - 1093696
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatg 81  Q
    |||||| || |||||||||||||||| ||||||||| ||||||| ||| ||||||    
T  1093642 caaataacacatataacaaatagatatgagtaaatttaaatattaaaataaaatg 1093696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 1612227 - 1612169
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||||||||||| |||| |||||||||||||| ||| ||||    
T  1612227 tcaatacaaataacacatataacaaatagacaagattaaattcaaatattaaaataaaa 1612169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 8839666 - 8839724
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || || ||||||||||||||||||||||| ||||||| ||| ||||    
T  8839666 tcaatacaaataacacatgtaacaaatagataagagtaaatttaaatattaaaataaaa 8839724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 25536617 - 25536666
Alignment:
Q  186 gtttccacacaaaatatatcgtgtaacaaacatgatatgaatatatgtcca 236  Q
    ||||||||||||| ||||||||||||||||||  |||||| ||||||||||    
T  25536617 gtttccacacaaa-tatatcgtgtaacaaacactatatgagtatatgtcca 25536666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 7464338 - 7464281
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    ||||| |||||| || || |||||||||||||||| |||||| ||||||| |||||||    
T  7464338 tcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaa 7464281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 15341479 - 15341520
Alignment:
Q  38 tataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||    
T  15341479 tataacaaataaataagagtaaattcaaatattaaaaaaaaa 15341520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 27174997 - 27175046
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||| |||||||| |||||||    
T  27174997 tcaatacaaatagcacatataacaaatagataaaagtaaatttaaatatt 27175046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 35583269 - 35583236
Alignment:
Q  192 acacaaaatatatcgtgtaacaaacatgatatga 225  Q
    |||||||||||||||||||||||||| |||||||    
T  35583269 acacaaaatatatcgtgtaacaaacacgatatga 35583236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 10542847 - 10542887
Alignment:
Q  30 atatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    |||||| || |||||||||||||| ||||||||||||||||    
T  10542847 atatcacatgtaacaaatagataatagtaaattcaaatatt 10542887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 31555746 - 31555615
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 120  Q
    ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||| |  |||  ||  ||| || |||||| ||||||||||    
T  31555746 tcaatacaaataacatatataacaaataaataagtgtaaattcaaatattaaaacaaaatgtaacaaattgaat--gtccgattttttccttatcattta 31555649  T
Q  121 aaaaagataatggatgagagtgaatttaaatatt 154  Q
    |||||||||||||||||||||||||| |||||||    
T  31555648 aaaaagataatggatgagagtgaattcaaatatt 31555615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 17641019 - 17640957
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    ||||| |||||| ||| | ||||||||||| ||||||||||||||||||| ||||||||||||    
T  17641019 tcaatacaaataacatttgtaacaaatagacaagagtaaattcaaatattaaaacaaaatgta 17640957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 17874429 - 17874497
Alignment:
Q  92 tatatgtctgaatttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||||| || |||||| |||||||||| ||||||||||||| || ||| |||| |||||||||||||    
T  17874429 tatatgtccgattttttccttatcatttagaaaagataatggaagaaagtaaattcaaatattgaaaaa 17874497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 19133173 - 19133208
Alignment:
Q  35 atatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19133173 atatataacaaatagataagaataaattcaaatatt 19133208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 27912913 - 27912952
Alignment:
Q  40 taacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  27912913 taacaaatagataagagtaaattcaaatattaaaataaaa 27912952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 37867467 - 37867518
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| || |||||||||||| ||||||||||||||||||||  ||||||||    
T  37867467 aaataacacatataacaaataaataagagtaaattcaaatatcaaaacaaaa 37867518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 39809312 - 39809261
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| || ||||| |||||||||||||||||||||||||||| ||| ||||    
T  39809312 aaatagcacatatatcaaatagataagagtaaattcaaatattaaaaaaaaa 39809261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 40301848 - 40301797
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| || |||| ||||||||||||||||||||||||||||| ||| ||||    
T  40301848 aaatagcacatatgacaaatagataagagtaaattcaaatattaaaataaaa 40301797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 42444399 - 42444458
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaat 80  Q
    ||||| |||||| || |||||||||||| ||||||||||||| ||||||| ||| |||||    
T  42444399 tcaatacaaatagcacatataacaaataaataagagtaaatttaaatattaaaataaaat 42444458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 5879977 - 5880038
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    ||||| |||||| ||||| |||||||||||||||| |||||| ||||||| ||| ||||||||    
T  5879977 tcaatacaaataacatatgtaacaaatagataagaataaatttaaatatt-aaaaaaaatgta 5880038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 17873069 - 17873123
Alignment:
Q  106 tttcattatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||| ||||| |||| ||||||||||||| || |||||||||||||||| |||||    
T  17873069 tttctttatcttttagaaaagataatggaagaaagtgaatttaaatattaaaaaa 17873123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 42651710 - 42651772
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    |||||||||||| ||||| |||||| || |||||| |||||| ||||||| ||| ||||||||    
T  42651710 tcaattcaaataacatatgtaacaagtaaataagaataaatttaaatatttaaaaaaaatgta 42651772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 15248975 - 15249024
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  15248975 tcaatacaaataacacatataacaaatagataagaataaatttaaatatt 15249024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 16039174 - 16039223
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| |||||| || ||||||||||| |||||||||| |||||||||||    
T  16039174 tcaatacaaataacacatataacaaattgataagagtagattcaaatatt 16039223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 29462612 - 29462661
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    |||||||||||| ||||| ||| |||||||||||| |||||| |||||||    
T  29462612 tcaattcaaataacatatgtaagaaatagataagaataaatttaaatatt 29462661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 740950 - 740906
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    |||||| ||||||||||||||||||||||||| ||| ||| ||||    
T  740950 ataacacatagataagagtaaattcaaatatttaaaaaaattgta 740906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 3171679 - 3171647
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatat 69  Q
    |||||||||||| ||||||||||||||||||||    
T  3171679 atataacaaataaataagagtaaattcaaatat 3171647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 17640844 - 17640816
Alignment:
Q  190 ccacacaaaatatatcgtgtaacaaacat 218  Q
    |||||||||||||||||||||||||||||    
T  17640844 ccacacaaaatatatcgtgtaacaaacat 17640816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 21566084 - 21566032
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || |||||||||||| |||| |||||||||||||||| ||| ||||    
T  21566084 caaataacacatataacaaataaataatagtaaattcaaatattaaaataaaa 21566032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 25915429 - 25915377
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || |||||| |||||||||||| |||||||||||||| ||| ||||    
T  25915429 caaataacacatataataaatagataagaataaattcaaatattaaaataaaa 25915377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 33134962 - 33134906
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaa 77  Q
    ||||| |||||| || ||||||||||| ||||||| |||||| ||||||| ||||||    
T  33134962 tcaatacaaataacacatataacaaatggataagaataaatttaaatattaaaacaa 33134906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 9788575 - 9788708
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 136  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||| |  ||| |||||| |||| |||||| |||||||||||||||||||||         
T  9788575 atataacaaatagataatagtaaattcaaataataaaacaaaatgtaacaaattgtatatgcctgattttttctttatcatttaaaaaagataat----- 9788669  T
Q  137 agagtgaatttaaatattgaaaaagtgtaacgaacacaa 175  Q
    |||||||||||||||||| ||||| | |||| |||||||    
T  9788670 agagtgaatttaaatattaaaaaattataacaaacacaa 9788708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 9187392 - 9187530
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 120  Q
    ||||| |||||| ||||||||||||||||||||  ||||||||||||||| ||| |||||||| |  | | |||||||| | |||||| |||||||||||    
T  9187392 tcaatacaaataacatatataacaaatagataaaggtaaattcaaatattaaaataaaatgtaacaaactgtatatgtccg-attttttattatcattta 9187490  T
Q  121 aaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||||||||| ||||| || |||| ||||||| |||||    
T  9187491 aaaaagataatgaatgagtgtaaattcaaatattaaaaaa 9187530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 24412048 - 24411925
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 136  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||    ||| |||| ||  || |||||  |||||||||||||||||||||||||     
T  24412048 atataacaaatagataagggtaaattcaaatattaaaacaaaatgtaataaattgtataagttcgatttttttcttatcatttaaaaaagataatggatc 24411949  T
Q  137 agagtgaatttaaatattgaaaaa 160  Q
    | ||| |||| ||||||| |||||    
T  24411948 aaagttaattcaaatattaaaaaa 24411925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 32345285 - 32345154
Alignment:
Q  104 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattga-aaaagtgtaacgaacacaannnnnnnnnngtttccacacaaaatat 202  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||          ||| ||||  |||||||    
T  32345285 tttttccttatcatttaaaaaagataatggatgagagtgaattcaaatattaacaaaagtgtaacaaacacaa---tttttttgttaccacgaaaaatat 32345189  T
Q  203 atcgtgtaacaaacatgatatgaatatatgtccaa 237  Q
    ||||||||||||| | ||||||| |||||||||||    
T  32345188 atcgtgtaacaaataagatatgagtatatgtccaa 32345154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 32361893 - 32361762
Alignment:
Q  104 tttttcattatcatttaaaaaagataatggatgagagtgaatttaaatattga-aaaagtgtaacgaacacaannnnnnnnnngtttccacacaaaatat 202  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||          ||| ||||  |||||||    
T  32361893 tttttccttatcatttaaaaaagataatggatgagagtgaattcaaatattaacaaaagtgtaacaaacacaa---tttttttgttaccacgaaaaatat 32361797  T
Q  203 atcgtgtaacaaacatgatatgaatatatgtccaa 237  Q
    ||||||||||||| | ||||||| |||||||||||    
T  32361796 atcgtgtaacaaataagatatgagtatatgtccaa 32361762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 11929868 - 11929810
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  11929868 tcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 11929810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 11941425 - 11941483
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  11941425 tcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 11941483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 15044531 - 15044473
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || ||||||||||||||||||| |||||||||||||| ||| ||||    
T  15044531 tcaatacaaataacacatataacaaatagataagattaaattcaaatattaaaataaaa 15044473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 31268096 - 31267895
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 120  Q
    ||||| ||| || ||||||||| ||||| || | |||||||||||||||| ||||||||||||    ||| ||||  | | || ||||  |||||||||     
T  31268096 tcaatacaagtagcatatataagaaataaattaaagtaaattcaaatattaaaacaaaatgtaataaattgtataaat-tcaactttt--ttatcattt- 31268001  T
Q  121 aaaaagataatggatgagagtgaatttaaatattgaaaa-agtgtaacgaacacaannnnnnnnnngtttccacacaaaatatatcgtgtaacaaacatg 219  Q
     |||||||||| ||| ||||| |||| ||||||| |||| |||||||| |||||||          ||| ||||| |||||||||||||||||||||| |    
T  31268000 -aaaagataatagattagagttaattcaaatattaaaaatagtgtaacaaacacaattatttttttgttaccacaaaaaatatatcgtgtaacaaacaag 31267902  T
Q  220 atatgaa 226  Q
    |||||||    
T  31267901 atatgaa 31267895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 37370069 - 37370117
Alignment:
Q  112 tatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||| |||||    
T  37370069 tatcatttaaaaaagataatggatgagagagaattcaaaaattaaaaaa 37370117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 4535793 - 4535844
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| || |||||| ||||||||||||||||||||||||||| ||| ||||    
T  4535793 aaataacacatataataaatagataagagtaaattcaaatattaaaataaaa 4535844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 42862472 - 42862523
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| || |||||||||||| ||||||||||||||||||||| ||| ||||    
T  42862472 aaataacacatataacaaataaataagagtaaattcaaatattaaaataaaa 42862523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 13369394 - 13369336
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||| ||||||||||||||| ||||||||||| ||| ||||    
T  13369394 tcaatacaaataacacatataataaatagataagagtacattcaaatattaaaataaaa 13369336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 1759779 - 1759738
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    
T  1759779 atataacaaatagataagaataaatttaaatattaaaacaaa 1759738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 16822979 - 16822922
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    ||||| |||||| || || |||||||||||||||| |||||| ||||||| |||||||    
T  16822979 tcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaa 16822922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 28969884 - 28969827
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    ||||| |||||| || ||||||||||||||||||| ||| || ||||||| |||||||    
T  28969884 tcaatacaaataacacatataacaaatagataagaataagtttaaatattaaaacaaa 28969827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 9187569 - 9187609
Alignment:
Q  196 aaaatatatcgtgtaacaaacatgatatgaatatatgtcca 236  Q
    ||||||||| |||||||||||| ||||||| ||||||||||    
T  9187569 aaaatatattgtgtaacaaacacgatatgagtatatgtcca 9187609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 13575788 - 13575748
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaat 67  Q
    |||||| |||||||||||| || ||||||||||||||||||    
T  13575788 caaataacatatataacaagtatataagagtaaattcaaat 13575748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 16243549 - 16243605
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    |||||| || || ||| ||||||||||||||||||||||||||| ||| ||| ||||    
T  16243549 caaataacacatgtaaaaaatagataagagtaaattcaaatattaaaataaagtgta 16243605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 23085788 - 23085828
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||||||||||||||||| |||||||||||| ||| ||||    
T  23085788 ataacaaatagataagagtcaattcaaatattaaaataaaa 23085828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 2484 - 2344
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaattttt-cattatcattt 119  Q
    ||||| |||||| || ||||||||||||||||| | ||||| |||||||| |||||||||||| |  |||  ||||||| || ||||| | |||||||||    
T  2484 tcaatacaaataacacatataacaaatagataaaaataaatacaaatattaaaacaaaatgtaacaaattgcatatgtccgatttttttccttatcattt 2385  T
Q  120 aaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||||||||||| ||||| |||||||| ||||||| |||||    
T  2384 aaaaaagataatagatgaaagtgaattcaaatattaaaaaa 2344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 6515 - 6637
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttt-tcattatcatttaaaaaagataatggatga 137  Q
    ||||||||| | |||||||||||||||||||| |||||||||||  |  | | ||||||||  | |||| ||||||||||||||||||||||||| ||||    
T  6515 ataacaaatgggtaagagtaaattcaaatattaaaacaaaatgttacgaaatgtatatgtcaaatttttttcattatcatttaaaaaagataatgcatga 6614  T
Q  138 gagtgaatttaaatattgaaaaa 160  Q
    ||||||||| ||||||| |||||    
T  6615 gagtgaattcaaatattaaaaaa 6637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 14912301 - 14912171
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatggatg 136  Q
    |||||| ||||||||||||||||||||||||||| |||||| || ||    | | ||||||||||  |||||| ||||||||  ||||||| ||||||||    
T  14912301 atataataaatagataagagtaaattcaaatattaaaacaagatataataaactgtatatgtctgtttttttccttatcattctaaaaagaaaatggatg 14912202  T
Q  137 agagtgaatttaaatattgaaaaagtgtaac 167  Q
    |||||||||| ||||||| ||||| ||||||    
T  14912201 agagtgaattcaaatattaaaaaactgtaac 14912171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 13240952 - 13240894
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  13240952 tcaatacaaataacatatataacaaatagataagagtaaattcaaatattaaaataaaa 13240894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 4965783 - 4965643
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattt- 119  Q
    ||||| |||||| || ||||||||||||||||| | |||| | ||||||| ||| | ||||||    ||| |||||||     |||||| |||||||||     
T  4965783 tcaatacaaatagcacatataacaaatagataaaactaaacttaaatattaaaatagaatgtaataaattgtatatgttcagttttttccttatcatttt 4965684  T
Q  120 aaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  4965683 aaaaaagataatggatgtgagtgaatttaaatattaaaaaa 4965643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 19707612 - 19707486
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatat----tcaaacaaaatgtatcctattttatatgtctgaatttttcattatcatttaaaaaagataatg 132  Q
    |||| ||||||||||||||||||  ||||||||    | ||||||||| || |  ||| |||||||| ||  ||||| || ||||||||||||||||||     
T  19707612 atatgacaaatagataagagtaatatcaaatatatattaaaacaaaatataacaaattatatatgtc-gatgttttccttttcatttaaaaaagataata 19707514  T
Q  133 gatgagagtgaatttaaatattgaaaaa 160  Q
    ||||||||||||||| |||||| |||||    
T  19707513 gatgagagtgaatttgaatattaaaaaa 19707486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 23124256 - 23124314
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  23124256 tcaatacaaatagcacatataacaaatagataagagtaaattcaaatattgaaataaaa 23124314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 26306499 - 26306456
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    |||||| || ||||||||||||||||||||||||||||||||||    
T  26306499 caaataacaaatataacaaatagataagagtaaattcaaatatt 26306456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 2441258 - 2441314
Alignment:
Q  22 caattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    |||| |||||| |||||||||||||||||||| | |||||| ||||||| |||||||    
T  2441258 caatacaaataacatatataacaaatagataataataaatttaaatattaaaacaaa 2441314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 4965599 - 4965556
Alignment:
Q  190 ccacacaaaatatatcgtgtaacaaacatgatatgaatatatgt 233  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||    
T  4965599 ccacacaaaatatatcgggtaacaaacacgatatgagtatatgt 4965556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 9894654 - 9894596
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| ||| ||||| |||||| |||||||||| |||||||||||||||| ||| ||||    
T  9894654 tcaatacaactatcacatataagaaatagataaaagtaaattcaaatattaaaataaaa 9894596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 14426431 - 14426489
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || || ||||||||||||||||||||||||| ||||| ||| ||||    
T  14426431 tcaatacaaataacacatgtaacaaatagataagagtaaattcatatattaaaataaaa 14426489  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 17942294 - 17942352
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||| |||||||||||||| |||||||||||| ||| ||||    
T  17942294 tcaatacaaataacaaatataataaatagataagagtgaattcaaatattaaaataaaa 17942352  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 14912115 - 14912079
Alignment:
Q  197 aaatatatcgtgtaacaaacatgatatgaatatatgt 233  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  14912115 aaatatatcgtgtaacaaacacgatatgagtatatgt 14912079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 17829620 - 17829672
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || ||||||||||||||||| | |||||||||||||| ||| ||||    
T  17829620 caaataacacatataacaaatagataaaaataaattcaaatattaaaataaaa 17829672  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 30591104 - 30591148
Alignment:
Q  26 tcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||||| || |||||||||||| |||| ||||||||||||||||    
T  30591104 tcaaataacacatataacaaataaataaaagtaaattcaaatatt 30591148  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 14771012 - 14770949
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtat 84  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14771012 tcaatgcaaataacatatataacaaatagataagagtaaattcaaatattaaaacaaaatgtat 14770949  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 21082630 - 21082747
Alignment:
Q  45 aatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctga---atttttcattatcatttaaaaaagataatggatgagagt 141  Q
    |||||| | ||| ||||||||||||| |||||||||||| |  ||| || || |||||   ||||||| |||| |||||||||||||||||||||| |||    
T  21082630 aatagacatgagaaaattcaaatattaaaacaaaatgtaacaaattgtacatatctgatttatttttccttattatttaaaaaagataatggatga-agt 21082728  T
Q  142 gaatttaaatattgaaaaa 160  Q
    ||||| ||||||| |||||    
T  21082729 gaattcaaatatttaaaaa 21082747  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 21967210 - 21967319
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 120  Q
    ||||| |||||| || ||||||||||||||||| |||||||||||||| | |||||||||||||  ||||| || |       ||||||| |||||||||    
T  21967210 tcaatacaaataacacatataacaaatagataaaagtaaattcaaataataaaacaaaatgtat-atatttgattt-------tttttca-tatcattta 21967300  T
Q  121 aaaaagataatggatgaga 139  Q
    |||||||||||||||||||    
T  21967301 aaaaagataatggatgaga 21967319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 21989646 - 21989755
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 120  Q
    ||||| |||||| || ||||||||||||||||| |||||||||||||| | |||||||||||||  ||||| || |       ||||||| |||||||||    
T  21989646 tcaatacaaataacacatataacaaatagataaaagtaaattcaaataataaaacaaaatgtat-atatttgattt-------tttttca-tatcattta 21989736  T
Q  121 aaaaagataatggatgaga 139  Q
    |||||||||||||||||||    
T  21989737 aaaaagataatggatgaga 21989755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 23267847 - 23267905
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  23267847 tcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 23267905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 13475524 - 13475398
Alignment:
Q  112 tatcatttaaaaaagataatggatgagagtgaatttaaatattgaaaaag--tgtaacgaacacaannnnnnnnnngtttccacacaaaatatatcgtgt 209  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||||   |||||| |||| ||          |||  |||||||| ||||||||||    
T  13475524 tatcatttaaaaaagataatgaatgagagtaaattcaaatattaaaaaaaaatgtaacaaacataatattacttttgttatcacacaaattatatcgtgt 13475425  T
Q  210 aacaaacatgatatgaatatatgtcca 236  Q
    |||||||| | ||||||||||||||||    
T  13475424 aacaaacacggtatgaatatatgtcca 13475398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 21495407 - 21495459
Alignment:
Q  28 aaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaat 80  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  21495407 aaataacatatgtaacaaatagataagagtaaatttaaatattaaaacaaaat 21495459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 49758642 - 49758590
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||| || |||||||||||||||||||||||||||||||||| ||| ||||    
T  49758642 caaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 49758590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 19468289 - 19468231
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || ||||||||| |||||||||||||||||||||||| ||| ||||    
T  19468289 tcaatacaaatagcacatataacaattagataagagtaaattcaaatattaaaataaaa 19468231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 49429993 - 49430030
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattca 64  Q
    |||||||||||||||||||||| |||||||||||||||    
T  49429993 caaatatcatatataacaaatacataagagtaaattca 49430030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 14770914 - 14770866
Alignment:
Q  127 ataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaa 175  Q
    |||||||||||||| ||||| ||||||| |||||||||||| |||||||    
T  14770914 ataatggatgagagcgaattcaaatattaaaaaagtgtaacaaacacaa 14770866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 17589983 - 17590040
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    ||||| |||||| ||||| ||| |||||||||||| |||||| ||||||| |||||||    
T  17589983 tcaatacaaataacatatgtaataaatagataagaataaatttaaatattaaaacaaa 17590040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 18875335 - 18875278
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaa 78  Q
    ||||| |||||| || || |||||||||||||||| |||||| ||||||| |||||||    
T  18875335 tcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaa 18875278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 20838039 - 20838084
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaatgtat 84  Q
    |||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  20838039 ataacaaatagataagagtagattcaaatatttaaaaaaaaagtat 20838084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 45879614 - 45879663
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatatt 70  Q
    ||||| ||||||  |||||||||||||| || ||||||||||||||||||    
T  45879614 tcaatacaaatagtatatataacaaatatattagagtaaattcaaatatt 45879663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 7791505 - 7791453
Alignment:
Q  27 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||||||| |||| ||||||| ||||||||||||| ||||||| ||| ||||    
T  7791505 caaatatcacatatgacaaatatataagagtaaattgaaatattaaaataaaa 7791453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 30806119 - 30806075
Alignment:
Q  35 atatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||||||||||| ||||||||||||| ||||||| ||| ||||    
T  30806119 atatataacaaataaataagagtaaattaaaatattaaaataaaa 30806075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 101338 - 101441
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgtatcctattttatatgtctgaatttttcattatcattta 120  Q
    ||||| |||||| || ||||||||||||||||| |||||||||||||||  ||| |||||||| |  ||| ||||||| ||| |||||| ||||||| ||    
T  101338 tcaatacaaataacacatataacaaatagataatagtaaattcaaatatctaaataaaatgtaacaaattatatatgtttgattttttccttatcatcta 101437  T
Q  121 aaaa 124  Q
    ||||    
T  101438 aaaa 101441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 101474 - 101522
Alignment:
Q  127 ataatggatgagagtgaatttaaatattgaaaaagtgtaacgaacacaa 175  Q
    ||||| |||||||||||||| ||||||| |||||||||||  |||||||    
T  101474 ataattgatgagagtgaattcaaatattaaaaaagtgtaataaacacaa 101522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 32867 - 32809
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||| |||||| || |||||| ||||||||||||||||||||||||||| ||| ||||    
T  32867 tcaatacaaataacacatataataaatagataagagtaaattcaaatattaaaataaaa 32809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 72715 - 72759
Alignment:
Q  116 atttaaaaaagataatggatgagagtgaatttaaatattgaaaaa 160  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||    
T  72715 atttgaaaaagataatggatgagagtgaattcaaatattaaaaaa 72759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 4262 - 4200
Alignment:
Q  21 tcaattcaaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaatgta 83  Q
    ||||| |||||| || ||||||||||||||||||| |||||| ||||||| ||| ||| ||||    
T  4262 tcaatacaaataacacatataacaaatagataagaataaatttaaatattaaaataaagtgta 4200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 43350 - 43308
Alignment:
Q  37 atataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||    
T  43350 atataacaaataaataagagtaaattcaaatattaaaataaaa 43308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 57335 - 57295
Alignment:
Q  39 ataacaaatagataagagtaaattcaaatattcaaacaaaa 79  Q
    ||||||||||||||| | |||||||||||||| ||||||||    
T  57335 ataacaaatagataataataaattcaaatatttaaacaaaa 57295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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