View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18780_low_8 (Length: 447)
Name: NF18780_low_8
Description: NF18780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18780_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 7553675 - 7554107
Alignment:
| Q |
1 |
ctaaaatgtagaacttacttttcctaaaataattannnnnnnatcgtaaagctgtggagaattataagttgatgcaaggtagtaaaaatgagaagtctaa |
100 |
Q |
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| T |
7553675 |
ctaaaatgtagaacttacttttcctaaaataattatttttttatcgtaaagctgtggagaattataagttgatgcaaggtagtaaaaatgagaagtctaa |
7553774 |
T |
|
| Q |
101 |
attgatattatccaaagtaagtggtttaaannnnnnnnnnnnnnnnnnacgtgaataattaattactcactacttgtcaaaaacaaaattaattactcac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7553775 |
attgatattatccaaagtaagtggtttaaattttgattttgattttttacgtgaataattaattactcactacttgtcaaaaacaaaattaattactcac |
7553874 |
T |
|
| Q |
201 |
tat---atgatatttatcctcaaaaatatctacaaaatctagtggtcaattcaattagctaatacaatttgggatttcaaatcacatgcacactaccaaa |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7553875 |
tattatatgatatttatcctcaaaaatatctacaaaatctagtggtcaattcaattagctaatacaatttgggatttcaaatcacatgcacactaccaaa |
7553974 |
T |
|
| Q |
298 |
aacagaaaactctcttgcagatagtaaaatggataaataaactcttagttgcagcaacaaaaagtatataggttaaagttttgtccaaaaacgaatatca |
397 |
Q |
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| T |
7553975 |
aacagaaaactctcttgcagataataaaatggataaataaactcctagttgcagcaacaaaaagtatataggttaaagttttgtccaaaaacgaatatca |
7554074 |
T |
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| Q |
398 |
ttatgtaattgcaccatccaacaacataaaaga |
430 |
Q |
| |
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| T |
7554075 |
ttatgtaattgcaccatccaacaacataaaaga |
7554107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 8047618 - 8047572
Alignment:
| Q |
295 |
aaaaacagaaaactctcttgcagatagtaaaatggataaataaactc |
341 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
8047618 |
aaaaacagaaaactctcttgcatataataaaatggataaataaactc |
8047572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 48250053 - 48250023
Alignment:
| Q |
265 |
tttgggatttcaaatcacatgcacactacca |
295 |
Q |
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| T |
48250053 |
tttgggatttcaaatcacatgcacactacca |
48250023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 45056046 - 45056018
Alignment:
| Q |
402 |
gtaattgcaccatccaacaacataaaaga |
430 |
Q |
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| T |
45056046 |
gtaattgcaccatccaacaacataaaaga |
45056018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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