View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18781_high_1 (Length: 882)
Name: NF18781_high_1
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18781_high_1 |
 | |
|
| [»] scaffold0305 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 717; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 19 - 870
Target Start/End: Complemental strand, 36527089 - 36526247
Alignment:
| Q |
19 |
acggtacaaaagataaaagtatttatagacatcatctcttacttgaataacaagtaagccaaccaactcataacaaactagttagttactaactaactct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36527089 |
acggtacaaaagataaaagtatttatagacatcatctcttacttgaataacaagtaagctaaccaactcataacaaactagttagttactaactaactct |
36526990 |
T |
|
| Q |
119 |
acctctaactactcgatagttgaattataaccacaaattccattttacttagtcaagtcatcgatcattttacaatataaacagaataacaccatacact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526989 |
acctctaactactcgatagttgaattataaccacaaattccattttacttagtcaagccatcgatcattttacaatataaacagaataacaccatacact |
36526890 |
T |
|
| Q |
219 |
cctcatcaatgccaagccaaggtctataccatccaattgtcccaagtcactaatatctgaac----------actatcttctcaaaagactaataatttc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36526889 |
cctcatcaatgccaagccaaggtctataccatccaattatcccaagtcactaatatctgaacgctatcttctactatcttctcaaaagactaataatttc |
36526790 |
T |
|
| Q |
309 |
taaaggggatagagatctccaaaaagatatgaaaataaatctcatattactaataatcatctacaattctcacaggagagaacaaggagaataccacaat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36526789 |
taaaggggatagagatctccaaaaagatatgaaaataaatctcatattactaataatcatctacaattctcataggagagaacaaggagaataccacaat |
36526690 |
T |
|
| Q |
409 |
agtggcgtggcggatcacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgtt |
508 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36526689 |
agtgacgtggcggatcacagacaagagaagtggattagaccagtagctggggaagtgaagtgcaatgtcgacgcagcaatttttaaggattaaggatgtt |
36526590 |
T |
|
| Q |
509 |
atggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaag |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36526589 |
atggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcgaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagctag |
36526490 |
T |
|
| Q |
609 |
aggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaac |
708 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526489 |
aggtctaaaagaagcta-------------------gaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaac |
36526409 |
T |
|
| Q |
709 |
ttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaa |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526408 |
ttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaa |
36526309 |
T |
|
| Q |
809 |
ataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgat |
870 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526308 |
ataatgttgcccacttgttagctcgggcgtcattatcttatgctagttcccgagttcatgat |
36526247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 382 - 870
Target Start/End: Complemental strand, 37924071 - 37923585
Alignment:
| Q |
382 |
aggagagaacaaggagaataccacaatagtggcgtggcggatcacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatg |
481 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || | |||||||||||| || | |||| || ||| |||| |||||||||||||||||||| |||| |
|
|
| T |
37924071 |
aggagagaacatggagaataccacaatagtgtaatgacagatcacagacaaaaggagtggactaaaccggtagtcggggaagtgaagtgcaatgttgatg |
37923972 |
T |
|
| Q |
482 |
cagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtct |
581 |
Q |
| |
|
|| ||||||||||||| |||| ||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
37923971 |
caacaatttttaaggaacaaggttgtta--gagtcggtatgtgtctaagaggggatcgaggggagttcattaaagcaaagacaacatagtacaaaggtct |
37923874 |
T |
|
| Q |
582 |
cccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaag |
681 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
37923873 |
cccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataaaatggcttggtaccttgaggtttccttcggtgtctatagaacttgattgcaag |
37923774 |
T |
|
| Q |
682 |
caagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaacttta |
781 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37923773 |
caagtggttgatggcatctcaagcaatctcagcaccaattccatgttcggcgcaattctgaatacttgcaaagtttcacttatgaatcatcaaaacttta |
37923674 |
T |
|
| Q |
782 |
agataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgat |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
37923673 |
agataagtttcattaggagacaaacaaataatgttgcccacttgttagttagggcgtcattatcttatgctagttcccaagatcatgat |
37923585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 473 - 873
Target Start/End: Original strand, 37871803 - 37872202
Alignment:
| Q |
473 |
atgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggta |
572 |
Q |
| |
|
|||| ||||| |||| ||| ||||| ||| ||||||||||||| | |||||||| ||||| |||| | |||||| ||||| | |||| | | |||| |
|
|
| T |
37871803 |
atgttgatgcggcaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagaggggatcaaggggagtacattagggagaagaaatcttggtt |
37871902 |
T |
|
| Q |
573 |
caaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaactt |
672 |
Q |
| |
|
||||| |||||||||||||| | | |||||||||||| |||||||||||| ||| || ||||||| | |||||| | ||||| |||||| || |
|
|
| T |
37871903 |
taaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcgacaatctgacttggtaaattaaggtttccttctgtgtccatcgaaatt |
37872002 |
T |
|
| Q |
673 |
gattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatc |
772 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||| ||| || |||||||||| | | | ||||| | | ||||||| |||||||| ||||| ||| |
|
|
| T |
37872003 |
gattgtaagcaagtggtttacgacatctctagcaatctcaacatcaattccatgctcgtggt-attctgattggttgcaaagcttcacttctgaataatc |
37872101 |
T |
|
| Q |
773 |
aaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgatga |
872 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| || | | |||||||||| ||||||| |||||||||||| |
|
|
| T |
37872102 |
aaaactttaagataagttttattaggagacaaacaaataatgtttcccacttattagtcagagttgcgttatcttatggtagttccaaagttcatgatga |
37872201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 47565349 - 47565444
Alignment:
| Q |
52 |
atctcttacttgaataacaagtaagccaaccaactcataacaaactagttagttactaactaactctacctctaactactcgatagttgaattata |
147 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
47565349 |
atctcttacttgaataacaagtaagcaaactaattcacaacaaactagttagttactaactaactctacttctaactacttggtagttgaattata |
47565444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 657 - 859
Target Start/End: Complemental strand, 35051840 - 35051638
Alignment:
| Q |
657 |
ggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaact |
756 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| ||| |||| | ||| |||||||| || ||||| ||| ||| | ||| ||| |||||| |
|
|
| T |
35051840 |
ggtgtctatcaaacttgattacaagcaagtggttgacaacataactaggagactcaacaccaatttcaagtttgacgcaattattgatatttgaaaaact |
35051741 |
T |
|
| Q |
757 |
tcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagt |
855 |
Q |
| |
|
||| ||| ||| | | ||||||||||||| |||||||||||| |||||| ||||||| ||| ||| |||||| | | | ||||||||| |||||||||| |
|
|
| T |
35051740 |
tcagtta-gaacctaccaaaactttaagaaaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacgtcattattttatgctagt |
35051642 |
T |
|
| Q |
856 |
tccc |
859 |
Q |
| |
|
|||| |
|
|
| T |
35051641 |
tccc |
35051638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 751 - 869
Target Start/End: Original strand, 8237318 - 8237434
Alignment:
| Q |
751 |
aaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatg |
850 |
Q |
| |
|
||||||||||||| | | | ||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| || || ||||||||| |
|
|
| T |
8237318 |
aaaacttcacttagaatttaccaaaattttaagataagtttcattag--gacaagcaaataatattgccgacttgttagctaggacgacaatatcttatg |
8237415 |
T |
|
| Q |
851 |
ctagttcccgagttcatga |
869 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
8237416 |
ttggttcccatgttcatga |
8237434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 36553684 - 36553584
Alignment:
| Q |
283 |
tatcttctcaaaagactaat-aatttctaaaggggatagagatctccaaaaagatat-gaaaataaatctcatatta-ctaataatcatctacaattctc |
379 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||| |||||||| ||||| ||||||||| | | | ||||||||||||| |||||| |
|
|
| T |
36553684 |
tatcttctcaaaagactaataaatttctaaaagggacagagatctcatgaaagatatggaaaaaaaatctcatgtcaccgaataatcatctactattctc |
36553585 |
T |
|
| Q |
380 |
a |
380 |
Q |
| |
|
| |
|
|
| T |
36553584 |
a |
36553584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 36553722 - 36553689
Alignment:
| Q |
255 |
ttgtcccaagtcactaatatctgaacactatctt |
288 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
36553722 |
ttgtcccaagtcactaatatttgaacactatctt |
36553689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 382 - 776
Target Start/End: Original strand, 4430426 - 4430817
Alignment:
| Q |
382 |
aggagagaacaaggagaataccacaatagtggcgtggcggatcacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatg |
481 |
Q |
| |
|
||||||||||||||| |||||||||| | ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4430426 |
aggagagaacaaggaaaataccacaacaatggaatggcggatcaca----agagaggtggattagaccagtagctggggaagtgaagtgcaatgttgatg |
4430521 |
T |
|
| Q |
482 |
cagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtg-atcgatgggagttcattaaagcaaagacagcgtggtacaaaggtc |
580 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||| | ||||||||| ||| |
|
|
| T |
4430522 |
cgacaatttttaaggatcaaggatgttatggggtcggtatgtgtctaagaggtgtatcgagaggagttcatttaagcaaatacatcatggtacaaaagtc |
4430621 |
T |
|
| Q |
581 |
tcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaa |
680 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||| |||||||||| ||| || |||||||||||||| ||||||| |
|
|
| T |
4430622 |
tcccacaacccaaagaagcataagcagaaggtctaaaataagcgataatatggcttgatactatgaggattttcaaagtgtctatcgaactgaattgcaa |
4430721 |
T |
|
| Q |
681 |
gcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaa |
776 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4430722 |
gtaagtggttgacggcatttctagcaacttcagcaccaatttcatgtttggcgcgattatgaatacttgcaaaacttcacttgtgaatcatcaaaa |
4430817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 422 - 870
Target Start/End: Original strand, 23269729 - 23270176
Alignment:
| Q |
422 |
atcacagacaagagaattggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtat |
521 |
Q |
| |
|
|||| ||||||||| ||||||||| | |||||| |||||||||||| |||||||| || |||| ||||||||| |||| ||||||||| | | ||| |
|
|
| T |
23269729 |
atcaaagacaagaggggtggattagatcgttagctgcggaagtgaagtgtaatgtcgacgcgacaatctttaaggatcaaggttgttatgggattgatat |
23269828 |
T |
|
| Q |
522 |
gtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaa |
621 |
Q |
| |
|
||| | | ||| |||||| |||||||||| | ||| |||||||| ||||||| ||||||| | |||||||| || || ||||||||||||||||||||| |
|
|
| T |
23269829 |
gtgcttgacaggggatcgaggggagttcatgagagcgaagacagcttggtacagaggtctctctcaacccaatgaggcggaagcaagaggtctaaaagaa |
23269928 |
T |
|
| Q |
622 |
gcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaatt |
721 |
Q |
| |
|
|||| || ||||||||||||| | || | | | |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||| | |
|
|
| T |
23269929 |
gcgagaaagtggcttggtactttaagatatacatcggtgtctatcgaacttgattgcaagcaa-tggttgacgacatctctagcaatctcaacaccaaat |
23270027 |
T |
|
| Q |
722 |
ccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgccca |
821 |
Q |
| |
|
||| ||| | ||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || |
|
|
| T |
23270028 |
ccacgttcgacgctattctgaacacttgcaaagcttcacttatgaatcatcaaaactttaagataagtttcattagaagacaagcaaataatgttgctca |
23270127 |
T |
|
| Q |
822 |
cttgttatctagggcgtcattatcttatgctagttcccgagttcatgat |
870 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
23270128 |
cttgttagctagggagtcattatcttatgctagttcccaagttcatgat |
23270176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 688 - 858
Target Start/End: Original strand, 14964904 - 14965074
Alignment:
| Q |
688 |
gttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataa |
787 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||| || || || |||| | || |||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
14964904 |
gttgacgacatctctaacaatttcagcaccaattttatattcaacgagattttaaacacttgcaaaatttaatttatgaatcatcaaaactttaagataa |
14965003 |
T |
|
| Q |
788 |
gtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcc |
858 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||| ||| ||||||| ||||||||||| |||||||| |
|
|
| T |
14965004 |
gtttcatcaagagacaatcaaataatgttgcccacttattagttagggcgccattatcttatactagttcc |
14965074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 659 - 870
Target Start/End: Original strand, 26917294 - 26917505
Alignment:
| Q |
659 |
tgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttc |
758 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| ||||||| ||| ||||| ||| ||||||| |||| |
|
|
| T |
26917294 |
tgtctatcgaacttgattgcaagcaagtggttgacggcatagctaggggactcaacaacaattcaatgtttgacgctattcttgatatttgcaaagcttc |
26917393 |
T |
|
| Q |
759 |
acttatgaatcatcaaaa-ctttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttc |
857 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| |||||||||||| |||||| ||||||||| | || | ||||||||||||||||||||| || | |
|
|
| T |
26917394 |
actta-gaatctacaaaaactttaagataagttttattaggagacaagcaaatagtgttgcccatctactagcaagggcgtcattatcttatgcttgtcc |
26917492 |
T |
|
| Q |
858 |
ccgagttcatgat |
870 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
26917493 |
ccatgttcatgat |
26917505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 778 - 853
Target Start/End: Original strand, 4431011 - 4431086
Alignment:
| Q |
778 |
tttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgcta |
853 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
4431011 |
tttaagataagttttattaggagagaagcaaataatgtttcccacttgttagctagggcggaattatcttatgcta |
4431086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 439 - 870
Target Start/End: Complemental strand, 29468749 - 29468318
Alignment:
| Q |
439 |
tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaattttt-aaggattaaggatgttatggggtcggtatgtgtctaagaggtgat |
537 |
Q |
| |
|
||||||||||| ||||| | || ||| | ||||||||||| |||| ||||||| |||||| || ||||||||||| || | ||||| |||||||| | |
|
|
| T |
29468749 |
tggattagaccggtagccagtgaggtggattgcaatgtcgacgcagtaattttttaaggatcaatgatgttatggg-tcagaatgtgcctaagaggggtg |
29468651 |
T |
|
| Q |
538 |
cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttg |
637 |
Q |
| |
|
||| ||||||||||| ||| |||||| | ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||| |||| |||||||| |
|
|
| T |
29468650 |
cgaggggagttcattggagcgaagacaacttggtataaaggtctcccacaacctaaagaagcgaaagcacgaggtctaaaaaaagaaataaagtggcttg |
29468551 |
T |
|
| Q |
638 |
gtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgat |
737 |
Q |
| |
|
||||| |||||||| | ||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||| ||||| || |
|
|
| T |
29468550 |
gtactttgaggtttccttcggtatctatcgaacttgattgcaagcaagtagttgattgcatctctagcaactttagcaccaggtccatgttcggcgcaat |
29468451 |
T |
|
| Q |
738 |
tctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcg |
837 |
Q |
| |
|
|| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
29468450 |
cctgaatatttgcaaagcttcacttatgaatcatcaaaactttaagataagtttcattatgagacaaacaaataatgttgcatacttgttagctaggatg |
29468351 |
T |
|
| Q |
838 |
tcattatcttatgctagttcccgagttcatgat |
870 |
Q |
| |
|
||||||| |||||||||||| | |||||||||| |
|
|
| T |
29468350 |
tcattatgttatgctagttctcaagttcatgat |
29468318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 5e-49; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 574 - 857
Target Start/End: Original strand, 9252262 - 9252544
Alignment:
| Q |
574 |
aaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttg |
673 |
Q |
| |
|
|||||| |||||||| |||| || | |||||||||| | ||||||||||||||| ||| ||| || | |||||||||| | |||||||| |||||| |
|
|
| T |
9252262 |
aaaggtatcccacaatccaacgaggtggaagcaagagatttaaaagaagcgataaattggtttgataatttgaggttttcttcg-tgtctatcaaacttg |
9252360 |
T |
|
| Q |
674 |
attgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatca |
773 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||||| |||||| |||| ||||| ||| | ||||| |||||||| |||||||||| |
|
|
| T |
9252361 |
attgtaagcaagtggttgacggcatctctagcaatctaagcaccaatttcatgttcagcgctattctgaatggtggcaaagcttcacttttgaatcatca |
9252460 |
T |
|
| Q |
774 |
aaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttc |
857 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||||||||| |||| |||||| | || ||| |||||||||| ||||||| |
|
|
| T |
9252461 |
aaactttaacataagtttcattaaaagacaaacgaataatgttacccatttgttagcctggacgttattatcttatcctagttc |
9252544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 457 - 718
Target Start/End: Complemental strand, 40728566 - 40728311
Alignment:
| Q |
457 |
ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatg---ttatggggtcggtatgtgtctaagaggtgatcgatgggagttcatta |
553 |
Q |
| |
|
||||| ||||||| |||||| |||||| |||||||||||||| ||||| | |||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
40728566 |
ggggaggtgaagtacaatgtagatgcaacaatttttaaggatcaaggaggcggttatggggtcggaatgtgcctaagagg------at---agttcatta |
40728476 |
T |
|
| Q |
554 |
aagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttc |
653 |
Q |
| |
|
||| |||||| | ||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||| || ||| |||||||| |||||||| | |
|
|
| T |
40728475 |
gagccaagacatcttggtatacaggtctccaataacccaaagaagcagaagcaagaggtctaaaggaagcgacaaaatggtttggtactttgaggtttac |
40728376 |
T |
|
| Q |
654 |
cagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcacca |
718 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
40728375 |
ttcgttgtctatcgaacttgattgcaagcaagtatttgacgacatctctagcaacttcagcacca |
40728311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 456 - 628
Target Start/End: Original strand, 10785850 - 10786022
Alignment:
| Q |
456 |
tggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaa |
555 |
Q |
| |
|
||||||||||||||| ||||| ||| || ||||||||||||| |||| ||||||||| ||||||||||| | ||||| |||||| |||||||||||| | |
|
|
| T |
10785850 |
tggggaagtgaagtgtaatgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattaga |
10785949 |
T |
|
| Q |
556 |
gcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataa |
628 |
Q |
| |
|
|| |||||| | ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
10785950 |
gcgaagacaacttggtacaaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaaacgataa |
10786022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 485 - 853
Target Start/End: Original strand, 37490630 - 37490999
Alignment:
| Q |
485 |
caatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctccc |
584 |
Q |
| |
|
|||||||||| || ||||||||||||||| || ||| |||| || | ||||||| |||||| |||| ||| |||||| | | || ||||| || || |
|
|
| T |
37490630 |
caatttttaaagagtaaggatgttatgggatcaacatgggtcttagcgatgatcgaggggagtacattggagcgaagacaacttcgtttaaaggccttcc |
37490729 |
T |
|
| Q |
585 |
acaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaa |
684 |
Q |
| |
|
|||| |||| | | ||||||| |||| ||||||||||||||| || ||||||| | |||||||| | | |||||||| |||||||||| |||||| |
|
|
| T |
37490730 |
acaatccaacgtggaggaagcaaaaggtttaaaagaagcgataaattgtcttggtaatttgaggtttccttcgttgtctatcaaacttgattgtaagcaa |
37490829 |
T |
|
| Q |
685 |
gtggttgacggcatctctagcaacttcagcaccaattccatgt-ttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaag |
783 |
Q |
| |
|
| ||||||| |||||||||||| ||| ||||||| ||||| ||| | ||| | ||| ||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
37490830 |
atcgttgacgacatctctagcaatctcaataccaatttcatgtgttgacattattttgaatgattgcaaagcttcactactgaatcatcaaaactttcag |
37490929 |
T |
|
| Q |
784 |
ataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgcta |
853 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
37490930 |
ataagtttcattagaagacaagtaaataatgttgtccacttgttagctaggacgtcattatctcatgcta |
37490999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 508 - 813
Target Start/End: Complemental strand, 13019258 - 13018965
Alignment:
| Q |
508 |
tatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaa |
607 |
Q |
| |
|
||||||||||| ||| |||| ||||| ||| || |||||||||||| || |||||| | |||| ||||| ||||||||| |||| || |||||||||| |
|
|
| T |
13019258 |
tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa |
13019159 |
T |
|
| Q |
608 |
gaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaa |
707 |
Q |
| |
|
| ||| ||||||||||||||| | | |||| | | ||| ||||| |||||||||||||||| |||| ||| ||||||| | |||||||||||| |
|
|
| T |
13019158 |
gtggtttaaaagaagcgataaattcgtttggcaattcgagattttcttcggtgtctatcgaacttaattgtaag----tggttgatgccatctctagcaa |
13019063 |
T |
|
| Q |
708 |
cttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaaca |
807 |
Q |
| |
|
| | |||||||||||||||| ||||| ||| || ||| |||||| | ||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
13019062 |
c--------ccattccatgtttggcgctattcttaatggttataaagcttcacatctgaatcatcaaaattttaagataagtttcattaggagacaatca |
13018971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 657 - 855
Target Start/End: Complemental strand, 24588736 - 24588542
Alignment:
| Q |
657 |
ggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaact |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| ||||| ||| ||| ||| || |
|
|
| T |
24588736 |
ggtgtctatcgaacttgattgcaagcaagtggttgacgacataactaggggactcaacaccaattccatgtttggcgctattcttgatatttgtaaagct |
24588637 |
T |
|
| Q |
757 |
tcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagt |
855 |
Q |
| |
|
||||||| ||||| | |||||||| ||||||| ||||| | |||| |||||| ||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
24588636 |
tcactta-gaatctaacaaaactt----gtaagttttattagaacacaatcaaatagtgttgcccattcactagaaagggcgtcattatcttatgctagt |
24588542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 818
Target Start/End: Original strand, 8294968 - 8295173
Alignment:
| Q |
613 |
ctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttca |
712 |
Q |
| |
|
|||||||| ||||||| |||||||| | |||||| | || | ||||||||||||||||||||||||||||||| || ||||||| || | ||| |
|
|
| T |
8294968 |
ctaaaagaggcgataaaatggcttggaagtatgagtctatctaaggtgtctatcgaacttgattgcaagcaagtgatttacggcatagcttggggactca |
8295067 |
T |
|
| Q |
713 |
gcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaata |
811 |
Q |
| |
|
|| ||||| ||||||||||| |||| ||| ||||||| ||||||||| ||||| |||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
8295068 |
acatcaatttcatgtttggcgttgttcttgatatttgcaaagcttcactta-gaatctgccaaaactttaagataagttttattaagagacaaataaata |
8295166 |
T |
|
| Q |
812 |
atgttgc |
818 |
Q |
| |
|
|||||| |
|
|
| T |
8295167 |
gtgttgc |
8295173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 747 - 859
Target Start/End: Original strand, 19920791 - 19920903
Alignment:
| Q |
747 |
ttgcaaaacttcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatc |
845 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||| || |||||||||||| |||| |||||| |||| ||| |||||| | ||| |||||||||| |
|
|
| T |
19920791 |
ttgcaaaacatcactta-gaatctatcaaaactttaagctaggtttcattaggaaacaagcaaatagtgtttgccatttgttagcaaggacgtcattatc |
19920889 |
T |
|
| Q |
846 |
ttatgctagttccc |
859 |
Q |
| |
|
|||| | ||||||| |
|
|
| T |
19920890 |
ttataccagttccc |
19920903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 772 - 810
Target Start/End: Original strand, 13923026 - 13923064
Alignment:
| Q |
772 |
caaaactttaagataagtttcattaggagacaaacaaat |
810 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
13923026 |
caaaactttaagataagtttcattaggaaacaagcaaat |
13923064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 472 - 870
Target Start/End: Complemental strand, 18998 - 18608
Alignment:
| Q |
472 |
aatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaa-agcaaagacagcgtgg |
570 |
Q |
| |
|
||||||||| || ||||||| ||||| |||||||||| | |||||| |||||||| ||||| |||| | |||||| |||| ||| |||||| | ||| |
|
|
| T |
18998 |
aatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggagcgaagacaacttgg |
18900 |
T |
|
| Q |
571 |
tacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaac |
670 |
Q |
| |
|
| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||| | | |||||| | ||||||||| |||| |
|
|
| T |
18899 |
tttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg-------ggcttggtaatttaaggtttccgtcggtgtctattgaac |
18807 |
T |
|
| Q |
671 |
ttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatca |
770 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| || ||| ||||||||||| |||| || ||| | ||| ||||||| |||||||| ||||||| |
|
|
| T |
18806 |
ttgattgtaaacaagtggttgacgacatatctagaaatctcaacaccaattccacgtttat-gctattttgaatggttgcaaagcttcacttctgaatca |
18708 |
T |
|
| Q |
771 |
tcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcccgagttcatgat |
870 |
Q |
| |
|
|||||| || |||| ||||||||||| || | ||| ||||||| |||||||||||||| | | | ||||||| || ||||||| ||| |||||||||| |
|
|
| T |
18707 |
tcaaaatttgaagacaagtttcattaagaaaaaaagaaataattttgcccacttgttagccaagttgtcattacctcatgctagctccaaagttcatgat |
18608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 601 - 850
Target Start/End: Original strand, 28283782 - 28284031
Alignment:
| Q |
601 |
gaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatct |
700 |
Q |
| |
|
|||||||| | | |||||||||| |||| |||||| ||| | |||||||| | |||||||| ||||||||| | ||||||||| ||| | ||||| |
|
|
| T |
28283782 |
gaagcaagggttttaaaagaagcaataaattggcttagtaatttgaggtttccttctgtgtctattgaacttgatcgtaagcaagtgcctgatgacatct |
28283881 |
T |
|
| Q |
701 |
ctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggag |
800 |
Q |
| |
|
||||||| ||| ||| |||| ||||| | | ||||| ||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283882 |
ctagcaatctcaacactgattctatgttcaacactattctgaatggctgctaagcttcacttctgaatcatcaaaactttaagataagtttcattaggag |
28283981 |
T |
|
| Q |
801 |
acaaacaaataatgttgcccacttgttatctagggcgtcattatcttatg |
850 |
Q |
| |
|
|||||||||||||| || ||||||||| |||| |||||||||||||| |
|
|
| T |
28283982 |
acaaacaaataatgatgttcacttgttagtcagggtgtcattatcttatg |
28284031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 714 - 855
Target Start/End: Original strand, 5460873 - 5461014
Alignment:
| Q |
714 |
caccaattccatgtttggcgcgattctcaatacttgcaaaacttcacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataa |
812 |
Q |
| |
|
||||||||||||||| ||||| ||||| | ||||||||| |||| ||| |||| | ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5460873 |
caccaattccatgttcggcgctattctagagacttgcaaagcttc-cttgagaatttaccaaaactttaagataagtttcattaggagacaagcaaatat |
5460971 |
T |
|
| Q |
813 |
tgttgcccacttgttatctagggcgtcattatcttatgctagt |
855 |
Q |
| |
|
|||||| |||||||| |||| | |||||||||||||||||| |
|
|
| T |
5460972 |
tgttgctgacttgttagctagaacatcattatcttatgctagt |
5461014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 748 - 870
Target Start/End: Complemental strand, 43000554 - 43000432
Alignment:
| Q |
748 |
tgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatctt |
847 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||| |||||||| |||||||||||| |||| ||| || | || ||||| ||| || ||||||||||| |
|
|
| T |
43000554 |
tgcaaagcttcacttaaaaaaaatcaaaactttaatataagttttattaggagacaagcaaacaatattactcatttgtttgctaaggtgtcattatctt |
43000455 |
T |
|
| Q |
848 |
atgctagttcccgagttcatgat |
870 |
Q |
| |
|
|||||| || || |||||||||| |
|
|
| T |
43000454 |
atgctaatttccaagttcatgat |
43000432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 658 - 695
Target Start/End: Original strand, 43381799 - 43381836
Alignment:
| Q |
658 |
gtgtctatcgaacttgattgcaagcaagtggttgacgg |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43381799 |
gtgtctatcgaacttgattgcaagcaagtggttgacgg |
43381836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 795 - 856
Target Start/End: Original strand, 43381919 - 43381980
Alignment:
| Q |
795 |
taggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagtt |
856 |
Q |
| |
|
||||||||||||||||| |||||| || |||||| | ||| ||||||||||||||||||||| |
|
|
| T |
43381919 |
taggagacaaacaaatagtgttgctcatttgttaacaaggacgtcattatcttatgctagtt |
43381980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 778 - 817
Target Start/End: Original strand, 29135150 - 29135189
Alignment:
| Q |
778 |
tttaagataagtttcattaggagacaaacaaataatgttg |
817 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
29135150 |
tttaagataagtttcgttaggagacaaataaataatgttg |
29135189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 816
Target Start/End: Original strand, 35762788 - 35762849
Alignment:
| Q |
756 |
ttcacttatgaatcatcaaaactttaaga-taagtttcattaggagacaaacaaataatgtt |
816 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||| ||| |||| | ||||||||||||||||| |
|
|
| T |
35762788 |
ttcacttgtgaatcatcaaaactttaatattaaattttattatgggacaaacaaataatgtt |
35762849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 772 - 857
Target Start/End: Complemental strand, 9738720 - 9738634
Alignment:
| Q |
772 |
caaaactttaagataagttt-cattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttc |
857 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||| ||||||||||||| || |||||| |||| |||||||||||||||| |||||| |
|
|
| T |
9738720 |
caaaactttaagatattttttcattaggtgacaaccaaataatgttgctcatttgttagctagagcgtcattatcttatgttagttc |
9738634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 780 - 858
Target Start/End: Original strand, 46107349 - 46107427
Alignment:
| Q |
780 |
taagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttcc |
858 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||| || |||||| |||| |||||||||| ||||| ||||||| |
|
|
| T |
46107349 |
taagatacgtttcattaggtgacaagtaaataatgttgctcatttgttagctagagcgtcattatattatgttagttcc |
46107427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 773 - 828
Target Start/End: Complemental strand, 21330833 - 21330778
Alignment:
| Q |
773 |
aaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgtta |
828 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||||||||| || |||||| |
|
|
| T |
21330833 |
aaaactttaagataagttttattcggagacaaataaataatgttgctcatttgtta |
21330778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 771 - 815
Target Start/End: Original strand, 43059104 - 43059148
Alignment:
| Q |
771 |
tcaaaactttaagataagtttcattaggagacaaacaaataatgt |
815 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43059104 |
tcaaaattttaagataagtttcattataagacaaacaaataatgt |
43059148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 856
Target Start/End: Complemental strand, 35529090 - 35529008
Alignment:
| Q |
773 |
aaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagtt |
856 |
Q |
| |
|
|||| ||||| ||||||||||||| | ||||||||||| ||||||| || |||||| |||| |||||||||||||| ||||| |
|
|
| T |
35529090 |
aaaattttaaaataagtttcattaagcgacaaacaaatgatgttgctca-ttgttagctagaatgtcattatcttatgttagtt |
35529008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 772 - 814
Target Start/End: Complemental strand, 47798438 - 47798396
Alignment:
| Q |
772 |
caaaactttaagataagtttcattaggagacaaacaaataatg |
814 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
47798438 |
caaaactttaagataagttttattaagagacaaataaataatg |
47798396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 728
Target Start/End: Original strand, 17571196 - 17571309
Alignment:
| Q |
615 |
aaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagc |
714 |
Q |
| |
|
|||||||||||||| | ||| ||| | |||||||||| ||| |||||||||||| | || ||| | |||||||||| |||||||||||| ||| | |
|
|
| T |
17571196 |
aaaagaagcgataaactaacttagtaatttgaggttttcttcggtctctatcgaacttaactgtaagtatgtggttgacgacatctctagcaatctcaac |
17571295 |
T |
|
| Q |
715 |
accaattccatgtt |
728 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
17571296 |
accaattacatgtt |
17571309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 859
Target Start/End: Complemental strand, 46016324 - 46016235
Alignment:
| Q |
770 |
atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttatctagggcgtcattatcttatgctagttccc |
859 |
Q |
| |
|
||||||||| ||| |||||||||||| | ||||| |||| |||||||| || |||||| ||| || ||||||||||||| | |||||| |
|
|
| T |
46016324 |
atcaaaactataatataagtttcatttgaggacaatcaaacaatgttgctcatttgttagttagagcatcattatcttatgtttgttccc |
46016235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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