View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18781_high_11 (Length: 245)

Name: NF18781_high_11
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18781_high_11
NF18781_high_11
[»] chr5 (4 HSPs)
chr5 (1-204)||(27428666-27428870)
chr5 (3-170)||(43238433-43238601)
chr5 (174-205)||(19179550-19179581)
chr5 (172-205)||(31156631-31156664)
[»] chr4 (7 HSPs)
chr4 (171-205)||(54997564-54997598)
chr4 (172-205)||(10565111-10565144)
chr4 (172-205)||(48084482-48084515)
chr4 (175-205)||(9608045-9608075)
chr4 (171-204)||(46804709-46804742)
chr4 (177-205)||(4404377-4404405)
chr4 (177-205)||(56564875-56564903)
[»] chr2 (2 HSPs)
chr2 (171-205)||(36758817-36758851)
chr2 (172-205)||(35315587-35315620)
[»] chr7 (9 HSPs)
chr7 (172-205)||(18803304-18803337)
chr7 (173-205)||(27117440-27117472)
chr7 (173-205)||(40143589-40143621)
chr7 (174-205)||(7712326-7712357)
chr7 (174-205)||(47270965-47270996)
chr7 (172-201)||(6882035-6882064)
chr7 (172-205)||(38675563-38675596)
chr7 (172-205)||(44390863-44390896)
chr7 (172-204)||(32916255-32916287)
[»] chr3 (5 HSPs)
chr3 (172-205)||(3009306-3009339)
chr3 (172-205)||(52963821-52963854)
chr3 (174-205)||(51982544-51982575)
chr3 (174-204)||(47914126-47914156)
chr3 (173-205)||(28792034-28792066)
[»] chr1 (2 HSPs)
chr1 (173-205)||(10776183-10776215)
chr1 (172-205)||(27982137-27982170)
[»] chr8 (2 HSPs)
chr8 (172-205)||(6148916-6148949)
chr8 (172-205)||(20169153-20169186)
[»] scaffold0121 (1 HSPs)
scaffold0121 (173-205)||(29527-29559)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 27428666 - 27428870
Alignment:
Q  1 atttttctctatatgtgagcaaataatcatccaccaatttatctctcataatgttacgcgtttatttattcttaaatccaattcaatatttt-ttgtgag 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  27428666 atttttctctatatgtgagcaaataatcatccaccaatttatctctcataattttacgcgtttatttattcataaatccaattcaatatttttttgtgag 27428765  T
Q  100 ggtaatttttcattttgcgagatcaaacacaaattatacaatcactaatagcaaaatatatataagtttgttgggtaaagatcctctccatttataaaaa 199  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  27428766 ggtaatttttcattttgcgagatctaacacaaattatacaatcactaatagcaaaacatatataagtttgttgtgttaagatcctctccatttataaaaa 27428865  T
Q  200 taaat 204  Q
    |||||    
T  27428866 taaat 27428870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 43238433 - 43238601
Alignment:
Q  3 ttttctctatatgtgagcaaataatcatccaccaatttatctctcataatgttacgcgtttatttattcttaaatccaattcaatattttttgtgagggt 102  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||   |||||    
T  43238433 ttttctctatatgtgagcaaataatcatccaacagtttatctctcataatgttacgcgtttatttattcataactcaaattcaatattctttaaaagggt 43238532  T
Q  103 aatttttcattttgcgagatcaaacac-aaattatacaatcactaatagcaaaatatatataagtttgt 170  Q
    |||||||||||||| |||||||||||| ||||||||||| | |||||||||| ||||||||||||||||    
T  43238533 aatttttcattttgtgagatcaaacacaaaattatacaaccgctaatagcaacatatatataagtttgt 43238601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 205
Target Start/End: Complemental strand, 19179581 - 19179550
Alignment:
Q  174 gtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||    
T  19179581 gtaaagatcctctccatttataaaaataaatg 19179550  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 31156664 - 31156631
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||| ||||||||||||||||||||||    
T  31156664 gggtaaagatcatctccatttataaaaataaatg 31156631  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 54997564 - 54997598
Alignment:
Q  171 tgggtaaagatcctctccatttataaaaataaatg 205  Q
    |||||||||||||||||||||||||||||||||||    
T  54997564 tgggtaaagatcctctccatttataaaaataaatg 54997598  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 10565111 - 10565144
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||||    
T  10565111 gggtaaagatcctctccatttataaaaataaatg 10565144  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 48084482 - 48084515
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||||    
T  48084482 gggtaaagatcctctccatttataaaaataaatg 48084515  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 9608075 - 9608045
Alignment:
Q  175 taaagatcctctccatttataaaaataaatg 205  Q
    |||||||||||||||||||||||||||||||    
T  9608075 taaagatcctctccatttataaaaataaatg 9608045  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 46804742 - 46804709
Alignment:
Q  171 tgggtaaagatcctctccatttataaaaataaat 204  Q
    ||||| ||||||||||||||||||||||||||||    
T  46804742 tgggtgaagatcctctccatttataaaaataaat 46804709  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 4404405 - 4404377
Alignment:
Q  177 aagatcctctccatttataaaaataaatg 205  Q
    |||||||||||||||||||||||||||||    
T  4404405 aagatcctctccatttataaaaataaatg 4404377  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 56564903 - 56564875
Alignment:
Q  177 aagatcctctccatttataaaaataaatg 205  Q
    |||||||||||||||||||||||||||||    
T  56564903 aagatcctctccatttataaaaataaatg 56564875  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 36758817 - 36758851
Alignment:
Q  171 tgggtaaagatcctctccatttataaaaataaatg 205  Q
    |||||||||||||||||||||||||||||||||||    
T  36758817 tgggtaaagatcctctccatttataaaaataaatg 36758851  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 35315620 - 35315587
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    |||| |||||||||||||||||||||||||||||    
T  35315620 gggttaagatcctctccatttataaaaataaatg 35315587  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 18803337 - 18803304
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||||    
T  18803337 gggtaaagatcctctccatttataaaaataaatg 18803304  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 27117440 - 27117472
Alignment:
Q  173 ggtaaagatcctctccatttataaaaataaatg 205  Q
    |||||||||||||||||||||||||||||||||    
T  27117440 ggtaaagatcctctccatttataaaaataaatg 27117472  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 40143621 - 40143589
Alignment:
Q  173 ggtaaagatcctctccatttataaaaataaatg 205  Q
    |||||||||||||||||||||||||||||||||    
T  40143621 ggtaaagatcctctccatttataaaaataaatg 40143589  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 205
Target Start/End: Original strand, 7712326 - 7712357
Alignment:
Q  174 gtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||    
T  7712326 gtaaagatcctctccatttataaaaataaatg 7712357  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 205
Target Start/End: Original strand, 47270965 - 47270996
Alignment:
Q  174 gtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||    
T  47270965 gtaaagatcctctccatttataaaaataaatg 47270996  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 6882035 - 6882064
Alignment:
Q  172 gggtaaagatcctctccatttataaaaata 201  Q
    ||||||||||||||||||||||||||||||    
T  6882035 gggtaaagatcctctccatttataaaaata 6882064  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 38675563 - 38675596
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||| ||||||    
T  38675563 gggtaaagatcctctccatttataaaagtaaatg 38675596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 44390896 - 44390863
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    |||| |||||||||||||||||||||||||||||    
T  44390896 gggttaagatcctctccatttataaaaataaatg 44390863  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 32916287 - 32916255
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaat 204  Q
    ||||||||||| |||||||||||||||||||||    
T  32916287 gggtaaagatcatctccatttataaaaataaat 32916255  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 3009339 - 3009306
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||||    
T  3009339 gggtaaagatcctctccatttataaaaataaatg 3009306  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 52963854 - 52963821
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||||    
T  52963854 gggtaaagatcctctccatttataaaaataaatg 52963821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 205
Target Start/End: Original strand, 51982544 - 51982575
Alignment:
Q  174 gtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||||||||||||||||||||||||    
T  51982544 gtaaagatcctctccatttataaaaataaatg 51982575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 47914126 - 47914156
Alignment:
Q  174 gtaaagatcctctccatttataaaaataaat 204  Q
    |||||||||||||||||||||||||||||||    
T  47914126 gtaaagatcctctccatttataaaaataaat 47914156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 28792066 - 28792034
Alignment:
Q  173 ggtaaagatcctctccatttataaaaataaatg 205  Q
    |||||||||| ||||||||||||||||||||||    
T  28792066 ggtaaagatcatctccatttataaaaataaatg 28792034  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 10776215 - 10776183
Alignment:
Q  173 ggtaaagatcctctccatttataaaaataaatg 205  Q
    |||||||||||||||||||||||||||||||||    
T  10776215 ggtaaagatcctctccatttataaaaataaatg 10776183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 27982170 - 27982137
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    |||| |||||||||||||||||||||||||||||    
T  27982170 gggttaagatcctctccatttataaaaataaatg 27982137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 6148916 - 6148949
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||||||||| ||||||||||||||||||||||    
T  6148916 gggtaaagatcatctccatttataaaaataaatg 6148949  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 20169186 - 20169153
Alignment:
Q  172 gggtaaagatcctctccatttataaaaataaatg 205  Q
    |||| |||||||||||||||||||||||||||||    
T  20169186 gggttaagatcctctccatttataaaaataaatg 20169153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 29527 - 29559
Alignment:
Q  173 ggtaaagatcctctccatttataaaaataaatg 205  Q
    ||||| |||||||||||||||||||||||||||    
T  29527 ggtaacgatcctctccatttataaaaataaatg 29559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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