View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18781_low_10 (Length: 250)
Name: NF18781_low_10
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18781_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 27428636 - 27428424
Alignment:
| Q |
16 |
tcatgctataattttaaaatatgaagacatacatataaatataattagtagatattgatgtgtctccaattttttggtacaaaatgatataatttttgta |
115 |
Q |
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| T |
27428636 |
tcatgctataattttaaaatatgaagacatacatataaatataattagtagatattgatgtgtctccaattttttggtacaaaatgatataatttttgta |
27428537 |
T |
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| Q |
116 |
ttcttcaatttttgcttcgtgataattatgtctttattatatcactcttgcattgatttatttttatataaatgttgagtataaaattttgcccccgaaa |
215 |
Q |
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| T |
27428536 |
ttctccaatttttgcatcttgataattatgtctttattgtatcactcttgcattgatttatttttatataaatgttgagtataaaattttgtccccgcaa |
27428437 |
T |
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| Q |
216 |
atcaaaatttcta |
228 |
Q |
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||||||||||||| |
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| T |
27428436 |
atcaaaatttcta |
27428424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 43238403 - 43238206
Alignment:
| Q |
16 |
tcatgctataattttaaaatatgaagacatacatataaatataattagtagatattgatgtgtctccaattt--tttggtacaaaatgatataatttttg |
113 |
Q |
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|||| |||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||||||| |
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| T |
43238403 |
tcatactatgattttaaaatatgaaaacatatgtataaatataattagtaaatattgatgtgtcttcaatttattttggtataaaataatataatttttt |
43238304 |
T |
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| Q |
114 |
tattcttcaatttttgcttcgtgataattatgtcttta--tta--tatcactcttgcattgatttatttttatataaatgttgagtataaaattttgc |
207 |
Q |
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| T |
43238303 |
tattctccaatttttgcttgatgataatgatgtctttaatttaattatcactcttgcattgatttatttttatataaattttgagtatataattttgc |
43238206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 7339435 - 7339266
Alignment:
| Q |
57 |
taattagtagatattgatgtgtctccaattttttg-gtacaaaatgatataatttttgtattcttcaatttttgcttcgtgataattatgtctttattat |
155 |
Q |
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|||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||| |||||| ||||||| | |||||||||||||||||||| | |
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| T |
7339435 |
taattagtagatattggtgtgtcttcaattttttgagtataaaatgatataatttttctattctctaattttttttgggtgataattatgtctttatttt |
7339336 |
T |
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| Q |
156 |
atcactcttgcattgatttatttttatataaatgttgagtataaaattttgcccccgaaaatcaaaattt |
225 |
Q |
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| T |
7339335 |
atcactcttgcattgatttatttttatataaattttgagtatataattttgcccccacaaatcaaaattt |
7339266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42981638 - 42981709
Alignment:
| Q |
16 |
tcatgctataattttaaaatatgaagacatacatataaatataattagtagatattgatgtgtctccaattt |
87 |
Q |
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|||| ||| |||||||||||| ||||| | ||| ||||||||||| |||||| |||| ||||||| |||||| |
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| T |
42981638 |
tcatactacaattttaaaatacgaagatacacagataaatataatcagtagacattggtgtgtcttcaattt |
42981709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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