View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18781_low_12 (Length: 245)

Name: NF18781_low_12
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18781_low_12
NF18781_low_12
[»] chr7 (8 HSPs)
chr7 (4-245)||(34888686-34888927)
chr7 (183-243)||(33607557-33607617)
chr7 (160-243)||(48249679-48249762)
chr7 (158-243)||(8048701-8048786)
chr7 (158-208)||(7509390-7509440)
chr7 (158-243)||(6680450-6680535)
chr7 (182-243)||(12223640-12223701)
chr7 (162-243)||(32793292-32793373)
[»] chr1 (7 HSPs)
chr1 (158-243)||(22857496-22857581)
chr1 (158-243)||(22856801-22856884)
chr1 (157-243)||(34088385-34088471)
chr1 (158-243)||(51450121-51450206)
chr1 (158-221)||(25038024-25038087)
chr1 (158-221)||(25043236-25043299)
chr1 (158-243)||(3117770-3117855)
[»] chr6 (1 HSPs)
chr6 (182-243)||(10855927-10855988)
[»] chr2 (8 HSPs)
chr2 (158-243)||(7412213-7412298)
chr2 (158-243)||(31814261-31814346)
chr2 (173-243)||(39256953-39257023)
chr2 (158-240)||(17466165-17466247)
chr2 (158-240)||(36012740-36012822)
chr2 (182-243)||(17466769-17466830)
chr2 (158-211)||(33161921-33161974)
chr2 (158-235)||(43380696-43380773)
[»] chr8 (4 HSPs)
chr8 (157-243)||(5736963-5737049)
chr8 (158-238)||(32564426-32564506)
chr8 (158-243)||(28619110-28619195)
chr8 (158-242)||(30134688-30134772)
[»] chr4 (5 HSPs)
chr4 (161-243)||(44158625-44158707)
chr4 (162-243)||(20599827-20599908)
chr4 (162-243)||(19050359-19050438)
chr4 (182-243)||(56041085-56041146)
chr4 (182-243)||(39870615-39870676)
[»] scaffold0039 (1 HSPs)
scaffold0039 (158-243)||(79194-79279)
[»] chr3 (1 HSPs)
chr3 (158-243)||(612335-612420)
[»] chr5 (2 HSPs)
chr5 (162-243)||(9537970-9538051)
chr5 (158-243)||(18004759-18004844)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 34888686 - 34888927
Alignment:
Q  4 aatatgggagaatcagtatcttcatgacagtaaaaaatacaagtccatgaatagacaggtattttaaaccaacaaattaacattgcaccacatttccgca 103  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34888686 aatatgggagaatcagtatcttcattacagtaaaaaatataagtccatgaatagacaggtattttaaaccaacaaattaacattgcaccacatttccgca 34888785  T
Q  104 tataattcaataagtcataacacaatgacttattttgcttaatattttgcaatatttctactttcattgtagtccatatgacacctcatatgctatgtca 203  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||    
T  34888786 tataattcaataagtcattacacaatgacttattttgcttaatattttgcaatatttctaatttcactgtagtccatgtgacacctcatatgctatatca 34888885  T
Q  204 tcgtaaaacttatgtcacgtcattacttaacataattattaa 245  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  34888886 tcgtaaaacctatgtcacgtcatcacttaacataattattaa 34888927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 33607557 - 33607617
Alignment:
Q  183 gacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||||| ||||| ||||||||| | |||||| |||| ||||||||||||||||    
T  33607557 gacacctcatatgcaatgtcttcgtaaaacctgtgtcacatcatcacttaacataattatt 33607617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 48249762 - 48249679
Alignment:
Q  160 tctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||| | | |||| ||| ||||||||||||||  || ||||||||||| || |||||| |||| ||||||||||||||||    
T  48249762 tctacttttactttagttcatgtgacacctcatatgacatatcatcgtaaaatttgtgtcacatcatcacttaacataattatt 48249679  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 8048701 - 8048786
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||| | |||||||| |||||| ||||||| |||||||||||| ||| | || ||| |||| |||||| | |||||||    
T  8048701 tttctactttcactttagtccatgtgacacatcatatgttatgtcatcgtataacatgtgacacatcatcacttaatagaattatt 8048786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 7509390 - 7509440
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgta 208  Q
    |||||||||||| | ||||||||||||||| |||||| | |||||||||||    
T  7509390 tttctactttcactttagtccatatgacacatcatattccatgtcatcgta 7509440  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 6680450 - 6680535
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||| | |||||| | |||||| |||  ||  |||||||||||||| ||||||||| |||  |||||||| |||||||    
T  6680450 tttctactttcactttagtccctttgacacatcaattgtcatgtcatcgtaaaatttatgtcacatcagcacttaacagaattatt 6680535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 12223640 - 12223701
Alignment:
Q  182 tgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    ||||| ||||||||  ||||||||||||||| | |||||| |||| |||||||| |||||||    
T  12223640 tgacaactcatatgtcatgtcatcgtaaaacctgtgtcacatcatcacttaacagaattatt 12223701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 32793373 - 32793292
Alignment:
Q  162 tactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||| | |||||||| |||||||||| |||  ||||||| ||||||| | || ||| |||| | ||||||||||||||    
T  32793373 tactttcactttagtccatgtgacacctcacatgtcatgtcattgtaaaacgtgtgccacatcatcagttaacataattatt 32793292  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 22857496 - 22857581
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||| | |||||||| ||||||||||||||  |||||||  |||||||| |||||| |||| ||||||||||||||||    
T  22857496 tttctactttcactttagtccatgtgacacctcatatgtcatgtcattataaaacttgtgtcacatcatcacttaacataattatt 22857581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 22856884 - 22856801
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||| | |||||  | ||||||||||||||| |||||||||||||| || |||||| | || ||||||||||||||||    
T  22856884 tttctactttcactttagtc--tgtgacacctcatatgccatgtcatcgtaaaatttgtgtcacataatcacttaacataattatt 22856801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 34088385 - 34088471
Alignment:
Q  157 atttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    ||||||||||||| | |||||| |||||||| ||| |||  ||||||||||||||| | |||| | |||| ||||||||||||||||    
T  34088385 atttctactttcactttagtccctatgacacatcaaatgtcatgtcatcgtaaaacatgtgtcgcatcatcacttaacataattatt 34088471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 51450206 - 51450121
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||| | |||||| | ||||||||||||||  ||||||||||||||| | |||||| |||  |||||||| |||||||    
T  51450206 tttctactttcagtttagtccctgtgacacctcatatgacatgtcatcgtaaaacatgtgtcacatcaccacttaacaaaattatt 51450121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 25038087 - 25038024
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcac 221  Q
    |||||||||||| | |||| ||| |||||||||||||| ||||||||| |||||| | ||||||    
T  25038087 tttctactttcactttagttcatgtgacacctcatatgttatgtcatcataaaacatgtgtcac 25038024  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 25043299 - 25043236
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcac 221  Q
    |||||||||||| | |||| ||| |||||||||||||| ||||||||| |||||| | ||||||    
T  25043299 tttctactttcactttagttcatgtgacacctcatatgttatgtcatcataaaacatgtgtcac 25043236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 3117855 - 3117770
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||| | |||||  | ||||||||||||||  ||| ||||||||||| | |||||| |||| | |||||| |||||||    
T  3117855 tttctactttcactttagtcattgtgacacctcatatgtcatgccatcgtaaaacatgtgtcacatcatcaattaacaaaattatt 3117770  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 10855988 - 10855927
Alignment:
Q  182 tgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    ||||||||||||||| ||||||||||||||||| |||||| | || ||||||||||||||||    
T  10855988 tgacacctcatatgccatgtcatcgtaaaacttgtgtcacatgatcacttaacataattatt 10855927  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 7412298 - 7412213
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||| ||||| | |||||| | |||||| |||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  7412298 tttctattttcactttagtccttgtgacacatcatatgccatgtcatcgtaaaacatgtgtcatgtcatcacttaacataattatt 7412213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 31814261 - 31814346
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||| ||||||| ||||| || |||||||||||||   ||||||||||||||||| |||||| |||| |||||||| |||||||    
T  31814261 tttctattttcattttagtctatgtgacacctcatatttcatgtcatcgtaaaacttgtgtcacatcatcacttaacagaattatt 31814346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 39256953 - 39257023
Alignment:
Q  173 tagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||| |||||||||| |||||||  |||||||| |||||| | ||||||| ||| ||||||||||||||||    
T  39256953 tagttcatatgacacatcatatgtcatgtcatcataaaacatctgtcacgccatcacttaacataattatt 39257023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 17466247 - 17466165
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataatt 240  Q
    |||||||||| | | || ||||| ||||||||||||||| ||||||| |||||||   ||| || |||| |||||||||||||    
T  17466247 tttctacttttactttaatccatgtgacacctcatatgccatgtcattgtaaaaccagtgttacatcatcacttaacataatt 17466165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 36012740 - 36012822
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataatt 240  Q
    |||||||||||||| |||||| | |||||| ||| ||| |||||||||||| ||||| | |||| | || ||||||| |||||    
T  36012740 tttctactttcattttagtccctctgacacatcaaatgatatgtcatcgtataacttgtatcacattatcacttaacgtaatt 36012822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 17466769 - 17466830
Alignment:
Q  182 tgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||||||  ||||||| |||||| | |||||| |||| |||||||| |||||||    
T  17466769 tgacacctcatatgccttgtcatcctaaaacatgtgtcacatcatcacttaacagaattatt 17466830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 33161974 - 33161921
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaa 211  Q
    |||||||||||||| |||||  | ||||||||||||||| ||||||| ||||||    
T  33161974 tttctactttcattttagtctttgtgacacctcatatgccatgtcattgtaaaa 33161921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 43380773 - 43380696
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaaca 235  Q
    |||||||||||| | |||| ||| ||||||||||||||    |||||||||||||  ||||||| |||| ||||||||    
T  43380773 tttctactttcactttagttcatgtgacacctcatatgtcgcgtcatcgtaaaacacatgtcacatcatcacttaaca 43380696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 5737049 - 5736963
Alignment:
Q  157 atttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    ||||||||||| | | |||||| | ||||||||||||||  ||||||||||||||| | |||||| |||| |||||||| |||||||    
T  5737049 atttctacttttactttagtccttgtgacacctcatatgtcatgtcatcgtaaaacctgtgtcacatcatcacttaacaaaattatt 5736963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 32564426 - 32564506
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataa 238  Q
    |||||||| ||| | |||||||| |||||| |||||||  |||||||| |||||| | |||||| |||| |||||||||||    
T  32564426 tttctactatcactttagtccatgtgacacatcatatggcatgtcatcctaaaacctgtgtcacatcatcacttaacataa 32564506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 28619195 - 28619110
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    ||||||| |||| | |||||| ||||| || ||| |||| ||||||||||||||| | || ||| |||| |||||||| |||||||    
T  28619195 tttctacattcactttagtccctatgatacatcaaatgccatgtcatcgtaaaacatgtgacacatcatcacttaacaaaattatt 28619110  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 30134772 - 30134688
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattat 242  Q
    |||||||||||| | |||||  | |||||| ||| |||  ||||||||||||||| | |||||| |||| || ||||||||||||    
T  30134772 tttctactttcactttagtctctgtgacacatcaaatgacatgtcatcgtaaaacatgtgtcacatcatcacctaacataattat 30134688  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 44158707 - 44158625
Alignment:
Q  161 ctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||  |||  || |||||| |||||||  |||||||||||||||||||||||| |||||  ||||||||||||||    
T  44158707 ctactttcatttaagtttatgtgacacatcatatgtcatgtcatcgtaaaacttatgtcacatcattgtttaacataattatt 44158625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 20599827 - 20599908
Alignment:
Q  162 tactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||| |||||| | ||||||||||||||  ||||||| | | ||| |||||||| |||| ||||||||||||||||    
T  20599827 tactttcattttagtccctgtgacacctcatatgtcatgtcattgcataacctatgtcacatcatcacttaacataattatt 20599908  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 19050438 - 19050359
Alignment:
Q  162 tactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||| | |||||||| ||||||||||||||| || ||||||||||||  ||||||| |||| |||||| | |||||||    
T  19050438 tactttcactttagtccatgtgacacctcatatgccatatcatcgtaaaac--atgtcacatcatcacttaatagaattatt 19050359  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 56041146 - 56041085
Alignment:
Q  182 tgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||| |||||||  ||||||| ||||||||| |||||| |||| ||||||||||||||||    
T  56041146 tgacacttcatatgtcatgtcattgtaaaacttgtgtcacatcatcacttaacataattatt 56041085  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 39870615 - 39870676
Alignment:
Q  182 tgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    ||||||||||||||  ||||||||||||||| | | |||| |||||||| |||| |||||||    
T  39870615 tgacacctcatatgtcatgtcatcgtaaaacgtgtatcacatcattactcaacagaattatt 39870676  T

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Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 79279 - 79194
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    ||||| |||||||| |||||| | ||| ||||||||||  ||||||||||||||| | |||||| |||| |||||||| |||||||    
T  79279 tttcttctttcattttagtccctgtgagacctcatatgtcatgtcatcgtaaaacatgtgtcacatcatcacttaacaaaattatt 79194  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 612420 - 612335
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||| | |||||  | ||||||||||| ||  |||||||||||||||   |||||| |||| ||||||||||||||||    
T  612420 tttctactttcactttagtctctgtgacacctcatgtgtcatgtcatcgtaaaacacgtgtcacatcatcacttaacataattatt 612335  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 9537970 - 9538051
Alignment:
Q  162 tactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||| | |||||||| ||| || |||||||  || |||||||||||| | |||||| | || ||||||||||||||||    
T  9537970 tactttcactttagtccatgtgaaacatcatatgtcatatcatcgtaaaacatgtgtcacataatcacttaacataattatt 9538051  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 18004844 - 18004759
Alignment:
Q  158 tttctactttcattgtagtccatatgacacctcatatgctatgtcatcgtaaaacttatgtcacgtcattacttaacataattatt 243  Q
    |||||||||||||| |||||  | |||||||||| ||||  |||||||||| ||||||| || | | || ||||||||||| ||||    
T  18004844 tttctactttcattttagtctctgtgacacctcacatgccttgtcatcgtacaacttatatcgcattatcacttaacataactatt 18004759  T

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