View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18781_low_15 (Length: 211)
Name: NF18781_low_15
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18781_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 26473412 - 26473229
Alignment:
| Q |
12 |
aacctgtgagtttgcatctagtcaaaataaacgaataattgagacagacgccagacatgatactcacacatagacacttgtaatagtttaagaaaataaa |
111 |
Q |
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| T |
26473412 |
aacctgtgagtttgcatctagtcaaaatatacaaataattgagacagacgccagacatgatactcacacatagacacttgtaatagtttaagaaaataaa |
26473313 |
T |
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| Q |
112 |
agtgtctgagttaactacgtgtcagaatcgtgtcgatgtcagacactaaaaacgcattcaatctgaagttccggtgctacatac |
195 |
Q |
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| T |
26473312 |
agtgtctgaattaaccacgtgtcagaatcgtgtcgatgtcagacactaaaaccacattcaatctgaagttccggtgctacatac |
26473229 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 32754600 - 32754643
Alignment:
| Q |
72 |
tactcacacatagacacttgtaatagtttaagaaaataaaagtg |
115 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
32754600 |
tactgacacgtagacacttgtaatagtttaagaaaatgaaagtg |
32754643 |
T |
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