View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18781_low_2 (Length: 490)
Name: NF18781_low_2
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18781_low_2 |
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| [»] scaffold0471 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 161 - 476
Target Start/End: Complemental strand, 1890186 - 1889872
Alignment:
| Q |
161 |
aataaacatctgagattttattagttactgtcatgatcaagtcgcaggcgaaaacaaaacttagaatctgactctcttctcggacaagcttaacgtctcc |
260 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
1890186 |
aataaacatatgagattttattagttactgtcatgatgaagtcgcaggcgaaaacaaaacttagaatgtgactctcttcttggacaagcttaacgtctcc |
1890087 |
T |
|
| Q |
261 |
tttcaatggatcctttcagagacaattctatcttttgnnnnnnncgtctcctttcagagaagtacctaaatattctgaagaaaaagaaaatccgatagat |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
1890086 |
tttcaatggatcctttcagagacaattctatctttt-aaaaaaacgtcacctttcagagaagtacttaaaaattctgaagaaaaagaaaatccgatagat |
1889988 |
T |
|
| Q |
361 |
aactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttctatccc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1889987 |
aactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttataacaacaaaattgagaaccttttccttctatccc |
1889888 |
T |
|
| Q |
461 |
taccaactatataatt |
476 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
1889887 |
taccaactatataatt |
1889872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 355 - 476
Target Start/End: Original strand, 1666241 - 1666362
Alignment:
| Q |
355 |
atagataactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttc |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1666241 |
atagataactcacctgcatatgcaagtatgttccacataatcactacagattaatatccatctctaatttctaacaacaaaattgagaaccttttccttc |
1666340 |
T |
|
| Q |
455 |
tatccctaccaactatataatt |
476 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
1666341 |
tatccctaccaactatataatt |
1666362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 33842296 - 33842234
Alignment:
| Q |
71 |
aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt |
132 |
Q |
| |
|
|||||||||||||||| ||| ||||||| || ||||||||||| ||| ||||||||||||||| |
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| T |
33842296 |
aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt |
33842234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 36104449 - 36104391
Alignment:
| Q |
100 |
ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca |
157 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
36104449 |
ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca |
36104391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 6402682 - 6402744
Alignment:
| Q |
71 |
aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt |
132 |
Q |
| |
|
|||||||||||||||| ||| ||||||| || ||||||||||| ||| |||| |||||||||| |
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|
| T |
6402682 |
aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcatgtgttgagt |
6402744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 374 - 461
Target Start/End: Complemental strand, 5999562 - 5999475
Alignment:
| Q |
374 |
atgcaagtatgttccacataatcactacagattaatatccatctcaaatttctaacaacaaaattgagaaccttttccttctatccct |
461 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |
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| T |
5999562 |
atgcaagtatgttcaacataatcactacagattaatatccatctcaaatttcggacaacaaaattgagaaacttttccttccatccct |
5999475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 42444272 - 42444330
Alignment:
| Q |
100 |
ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca |
157 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
42444272 |
ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca |
42444330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 14526034 - 14526124
Alignment:
| Q |
66 |
aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgctc |
156 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||| |||||| |||||||| |
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| T |
14526034 |
aaagaaatccattaataaagtgaattgcgtgctgttgaacatgtcgtgtggttttcgtgtgttgaatttgtcgtgctgtataacagcgctc |
14526124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 48583900 - 48583989
Alignment:
| Q |
66 |
aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgct |
155 |
Q |
| |
|
|||| |||||||| |||||||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
48583900 |
aaagaaatccatttataaagtgaattaagtgttgttcaacatgttgtgtggctttcgtgtgttgattttgtcgtgctgtatagcagcgct |
48583989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 2358869 - 2358812
Alignment:
| Q |
91 |
tgggtgctgttcaacatgtcgtgtggctttcgtgtgtt-gagtttgtcgtgttgtata |
147 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||| |
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|
| T |
2358869 |
tgggtgatgttcaacatgtcctgcggctttcgtgtgttagagtttgtcgtgttgtata |
2358812 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 6019923 - 6019874
Alignment:
| Q |
66 |
aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtg |
115 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6019923 |
aaagaaatccatttataaagtgaattgggtgttgttcaacatgtcgtgtg |
6019874 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 41312988 - 41312898
Alignment:
| Q |
66 |
aaagcaatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtatagcagcgctc |
156 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||| | ||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
41312988 |
aaagaaatctattaataaagtgaattgggtgtcgttcaacaacttatgtagcattcgtgtgttgagtttgtcgtgttgtatagcagcgctc |
41312898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 21031959 - 21032002
Alignment:
| Q |
104 |
acatgtcgtgtggctttcgtgtgttgagtttgtcgtgttgtata |
147 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
21031959 |
acatgtcgtgtggctttcgtgtgttaagttgttcgtgttgtata |
21032002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0471 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0471
Description:
Target: scaffold0471; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 2564 - 2506
Alignment:
| Q |
100 |
ttcaacatgtcgtgtggcttt-cgtgtgttgagtttgtcgtgttgtatagcagcgctca |
157 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
2564 |
ttcaacatgtcgtgcggcttttcgtgtgtagagtctgtcgtgctgtatagcagcgctca |
2506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 11021628 - 11021566
Alignment:
| Q |
71 |
aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt |
132 |
Q |
| |
|
|||||||||||||||| ||| ||||||| || ||||||||||| ||| ||||||||||||||| |
|
|
| T |
11021628 |
aatccattaataaagtaaatagggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt |
11021566 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 102839 - 102901
Alignment:
| Q |
71 |
aatccattaataaagtgaattgggtgctgttcaacatgtcgtgtggc-tttcgtgtgttgagt |
132 |
Q |
| |
|
|||||||||||||||| ||| |||||| || ||||||||||| ||| ||||||||||||||| |
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|
| T |
102839 |
aatccattaataaagtaaatatggtgctattgaacatgtcgtgcggcttttcgtgtgttgagt |
102901 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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