View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18781_low_4 (Length: 395)
Name: NF18781_low_4
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18781_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 34194535 - 34194163
Alignment:
| Q |
16 |
aaaatctcaggaaaagtggagttcccaaaattggactgatggttgtgttaggagagttcagttagattgtgacaacagggatcgctttttgaaacgtatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194535 |
aaaatctcaggaaaagtggagttcccaaaattggactgatggttgtgttaggagagttcagttagattgtgacaacagggatcgctttttgaaacgtatg |
34194436 |
T |
|
| Q |
116 |
ggaatgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194435 |
ggaatgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcat |
34194336 |
T |
|
| Q |
216 |
atgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggaggacaagaccttta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194335 |
atgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggaggacaagaccttta |
34194236 |
T |
|
| Q |
316 |
cataagagttgcagcttcagaattaggtattaaactgctaatatttttattccatttaatattctgatgatgt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34194235 |
cataagagttgcagcttcagaattaggtattaaactgctaatatttttattccatttaatattctgatgatgt |
34194163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 32 - 335
Target Start/End: Original strand, 34217057 - 34217360
Alignment:
| Q |
32 |
tggagttcccaaaattggactgatggttgtgttaggagagttcagttagattgtgacaacagggatcgctttttgaaacgtatgggaatgaagttgccag |
131 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||| ||| |||||||||||||||||| ||| |||||||||| | |||| ||||||||||||||| |
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|
| T |
34217057 |
tggagtttacaaaattggtcggatggttgtgttaggaaagtgaagttagattgtgacaacaatgatggctttttgaagcatatgagaatgaagttgccag |
34217156 |
T |
|
| Q |
132 |
atacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatgcaaatttagatgt |
231 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34217157 |
acacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatgcaaatttagatgt |
34217256 |
T |
|
| Q |
232 |
cagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggaggacaagacctttacataagagttgcagct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
34217257 |
cagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggagggcaagacctttacataagagttgcagat |
34217356 |
T |
|
| Q |
332 |
tcag |
335 |
Q |
| |
|
|||| |
|
|
| T |
34217357 |
tcag |
34217360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 26 - 343
Target Start/End: Original strand, 34205626 - 34205943
Alignment:
| Q |
26 |
gaaaagtggagttcccaaaattggactgatggttgtgttaggagagttcagttagattgtgacaacagggatcgctttttgaaacgtatgggaatgaagt |
125 |
Q |
| |
|
|||||||||| ||| |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
34205626 |
gaaaagtggaattcacaaatttggtcggatggttgtgttaggagagttcagttagattgtgacaacagggatcgcttttcaaaacgtatgggaatgaagt |
34205725 |
T |
|
| Q |
126 |
tgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatgcaaattt |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||| || |||| | |||||||| ||| ||||||||||||| ||| |
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|
| T |
34205726 |
tgcctgatacatcaaaatcttggtttaataagagtatgagccttgaagaatgtgagaaatcctgtctaggaaactgtaattgcacagcatatgcaagttt |
34205825 |
T |
|
| Q |
226 |
agatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggaggacaagacctttacataagagtt |
325 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||||||||||||||| | |||| || |||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
34205826 |
agatgtcagagatggtggaagtggttgcatactttggtttaataacattcttgatgccaaaaaactacgtgctggaggacaagacctttacataagagtt |
34205925 |
T |
|
| Q |
326 |
gcagcttcagaattaggt |
343 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
34205926 |
gcagcttcagaactaggt |
34205943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 119 - 279
Target Start/End: Complemental strand, 5526032 - 5525872
Alignment:
| Q |
119 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
218 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | | |||||| ||| |||||| |||||| || | | ||| | | ||| |||||||| || ||||||| |
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|
| T |
5526032 |
atgaagttgccagacacgtcaacatcttggtatgacaagagcttgagcctcgaggaatgtaagacaatgtgtttgaaaaattgttcttgcactgcatatg |
5525933 |
T |
|
| Q |
219 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
279 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
5525932 |
caaattcagatgtcagagatggtgggagtggctgcttactttggtttaacaacattgtgga |
5525872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 279
Target Start/End: Original strand, 5848774 - 5848934
Alignment:
| Q |
119 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
218 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | | |||||| ||| ||| || |||||| || | | || | | ||||||| |||| || ||||||| |
|
|
| T |
5848774 |
atgaagttgccagacacgtcaacatcttggtatgacaagagcttgagccttgaggaatgtaagacactgtgcttgaaaaactgtacttgcactgcatatg |
5848873 |
T |
|
| Q |
219 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
279 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
5848874 |
caaatttagatatcagagatggtgggagtggctgcttactttggtttaacaacattgtgga |
5848934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 265
Target Start/End: Complemental strand, 5484988 - 5484842
Alignment:
| Q |
119 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
218 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||| | |||||| ||| ||| | |||||| || | | ||| | | |||||||||||| || ||||||| |
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|
| T |
5484988 |
atgaagttgccagatacgtcagcatcgtggtttgacaagagcttgagccttaaggaatgtaagacaatgtgtttgaaaaactgttcttgcactgcatatg |
5484889 |
T |
|
| Q |
219 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggttt |
265 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
5484888 |
caaatttagatatcagagatggtgggagtggctgcttactttggttt |
5484842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 274
Target Start/End: Complemental strand, 5503195 - 5503040
Alignment:
| Q |
119 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
218 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | | | |||| ||| ||| || |||||| || | | ||| | | |||||||||||| || ||||||| |
|
|
| T |
5503195 |
atgaagttgccagacacgtcaacatcttggtatgacaggagcttgagccttgaggaatgtaagacaatgtgtttgaaaaactgttcttgcactgcatatg |
5503096 |
T |
|
| Q |
219 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacatt |
274 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||||||| ||||||||| | |||||| |
|
|
| T |
5503095 |
caaattcagatatcagagatggtgggagtggctgcttactttggtttgacaacatt |
5503040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 5854152 - 5854230
Alignment:
| Q |
196 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacatt |
274 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||| | |||||| |
|
|
| T |
5854152 |
aaactgttcttgcactgcatatgcaaatttagatatcagatatgttggaagtggctgcttactttggtttgacaacatt |
5854230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 5802454 - 5802525
Alignment:
| Q |
196 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
267 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
5802454 |
aaactgttcttgcaccgcatatgcaaattcagatatcagggatggtggtagtggctgcttactttggtttaa |
5802525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 279
Target Start/End: Complemental strand, 5490382 - 5490222
Alignment:
| Q |
119 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
218 |
Q |
| |
|
||||||||||||||||||||| ||| | | ||| |||||| ||| ||| || |||||| || | | ||| | | ||||||| |||| || ||||||| |
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|
| T |
5490382 |
atgaagttgccagatacatcatcatcgtattataacaagagcttgagccttgaggaatgtaagacaatgtgtttgaaaaactgtacttgcactgcatatg |
5490283 |
T |
|
| Q |
219 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
279 |
Q |
| |
|
|||||| |||| ||| ||||||||| ||||||||| | ||||||||||| |||||| |||| |
|
|
| T |
5490282 |
caaattcagatatcaaagatggtgggagtggctgcatactttggtttaacaacattgtgga |
5490222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 267
Target Start/End: Original strand, 5828045 - 5828193
Alignment:
| Q |
119 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
218 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | | |||| | ||| ||| || |||||| || | | ||| | | |||||||||||| | ||||||| |
|
|
| T |
5828045 |
atgaagttgccagacacgtcaacatcttggtatgacaagaacttgagccttgaggaatgtaagacaatgtgtttgaaaaactgttcttgcattgcatatg |
5828144 |
T |
|
| Q |
219 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
267 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5828145 |
caaattctgatatcagagatggtgggagtggctgcttactttggtttaa |
5828193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 20343732 - 20343665
Alignment:
| Q |
212 |
gcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
279 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||| | || |||||||| |
|
|
| T |
20343732 |
gcatatgcaaatttagatatcagagatggtgggagtggttgcttactttggtttgacaatattttgga |
20343665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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