View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18781_low_6 (Length: 325)
Name: NF18781_low_6
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18781_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 39245709 - 39245398
Alignment:
| Q |
1 |
tcattgcagcaggcacagggggaattaagcccagcatcaccacacttggagccgaccaatttgatgagtttgagccgaaagagaagtctcaaaaactttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245709 |
tcattgcagcaggcacagggggaattaagcccagcatcaccacacttggagccgaccaatttgatgagtttgagccgaaagagaagtctcaaaaactttc |
39245610 |
T |
|
| Q |
101 |
cttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattagtctacatacaagacaatgttggttttgcccttggttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245609 |
cttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattagtctacatacaagacaatgttggttttgcccttggttat |
39245510 |
T |
|
| Q |
201 |
gggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttatagacataaattgccttcaggaagtcctttaactagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39245509 |
gggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttatagacataaattgccttctggaagtcctttaactagaa |
39245410 |
T |
|
| Q |
301 |
tggttcaagtct |
312 |
Q |
| |
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|||||||||||| |
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| T |
39245409 |
tggttcaagtct |
39245398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 39251711 - 39251420
Alignment:
| Q |
1 |
tcattgcagcaggcacagggggaattaagcccagcatcaccacacttggagccgaccaatttgatgagtttgagccgaaagagaagtctcaaaaactttc |
100 |
Q |
| |
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|||||||||||||||| |||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
39251711 |
tcattgcagcaggcacgggggga-ttaagcccaacatctccacacctggagccgaccaatttgatgagtttgagcctaaagagaggtcccaaaaactttc |
39251613 |
T |
|
| Q |
101 |
cttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattagtctacatacaagacaatgttggttttgcccttggttat |
200 |
Q |
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||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39251612 |
ctttttcaattggtgggtgttctgcattataactggaggcattttagccgaaacaggattagtctacatacaagacaatgttgg-tttgcccttggttat |
39251514 |
T |
|
| Q |
201 |
gggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttatagacataaattgccttcaggaagtcctttaa |
294 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||| ||||||| |
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| T |
39251513 |
gggattccaaccatcttgcttgttttttcaacattggtgtttttgtttggaacaccactttatagacatagattaccttctggaagccctttaa |
39251420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 39261305 - 39260994
Alignment:
| Q |
1 |
tcattgcagcaggcacagggggaattaagcccagcatcaccacacttggagccgaccaatttgatgagtttgagccgaaagagaagtctcaaaaactttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| |||| ||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
39261305 |
tcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagtttgagcctaaagagaggtcccaaaaactttc |
39261206 |
T |
|
| Q |
101 |
cttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattagtctacatacaagacaatgttggttttgcccttggttat |
200 |
Q |
| |
|
|| ||||||||||||||||| |||||| |||||||| |||||| ||| ||||| |||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
39261205 |
attctacaattggtgggtgttttacattttaattggaaccatttcagctcaaacaatattggtttacatacaagacaatgttggttttgcccttggctat |
39261106 |
T |
|
| Q |
201 |
gggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttatagacataaattgccttcaggaagtcctttaactagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||| | |||||||||| |||| || || ||| ||||||| |||| ||| ||||| ||||||||||||||||||| |
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| T |
39261105 |
gggattccaaccatattgcttgttgtttccatattggtgtttgtgttaggtactccactttataggcatagattaccttctggaagtcctttaactagaa |
39261006 |
T |
|
| Q |
301 |
tggttcaagtct |
312 |
Q |
| |
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|||||||||||| |
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| T |
39261005 |
tggttcaagtct |
39260994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 39239722 - 39239575
Alignment:
| Q |
165 |
tacatacaagacaatgttggttttgcccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttata |
264 |
Q |
| |
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||||||||||||||| |||||| | ||||| ||||| |||||||||| |||| ||||||| |||||||||||| || ||||||||| ||||| |
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| T |
39239722 |
tacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaacaccatattata |
39239623 |
T |
|
| Q |
265 |
gacataaattgccttcaggaagtcctttaactagaatggttcaagtct |
312 |
Q |
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|||| ||||||||| |||| || ||| |||| || ||| ||||||||| |
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| T |
39239622 |
gacacaaattgcctccaggcagccctataacaaggatgcttcaagtct |
39239575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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