View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18781_low_7 (Length: 313)
Name: NF18781_low_7
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18781_low_7 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 11376 - 11098
Alignment:
| Q |
14 |
aacctgtgcaccaaaccatcacattagaaccttcacaaagcctttctagcaagaaccattcgattgaaaaaccactatcaattttaaactgaacataagg |
113 |
Q |
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| T |
11376 |
aaccggtgcaccaa-ccatcacattagaaccttcacaaagcctt-ctagcaagaaccattcgattgaaa--ccactatcaattttaaactgaacataagg |
11281 |
T |
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| Q |
114 |
acgtctctcaaagaccagagtacactcccacaaattttcacagtcatctaccatcttcagcgcaggcatcgccgctatatcaagcgtgagctcacaaaat |
213 |
Q |
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| T |
11280 |
acgtctctcaaagaccagagtacactcccacaaattttcacagtcatctaccatcttcagcgcaggcatcgc---tatatcaagcgtgagctcacaaaat |
11184 |
T |
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| Q |
214 |
ccactataagcaagggtctgtatgatgaaaagaaggaaaaaagattaggaatactccttgtcatccaattaaaccatgttttatgt |
299 |
Q |
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| T |
11183 |
ccactataagcaagggtctgtatgatgaaaagaaggaaaaaatattaggaatactccttgtcatccaattaaaccatgttttatgt |
11098 |
T |
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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 186 - 297
Target Start/End: Original strand, 2888876 - 2888986
Alignment:
| Q |
186 |
cgctatatcaagcgtgagctcacaaaatccactataagcaagggtctgtatgatgaaaagaaggaaaaaagattaggaatactccttgtcatccaattaa |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2888876 |
cgctatatcaagcgtgagctcacaaaatccactataag-aagggtctgtatgatgaaaagaaggaaaaaatattaggaatactccttgtcatccaattaa |
2888974 |
T |
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| Q |
286 |
accatgttttat |
297 |
Q |
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| T |
2888975 |
accatgttttat |
2888986 |
T |
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