View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18781_low_8 (Length: 271)
Name: NF18781_low_8
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18781_low_8 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 4803301 - 4803564
Alignment:
| Q |
8 |
tagcataggactgtttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctccttaagaat |
107 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4803301 |
tagcaaaggactatttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctccttaagaat |
4803400 |
T |
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| Q |
108 |
cccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggctccttggatatcatcatacacatgcaaaaattagtat |
207 |
Q |
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| T |
4803401 |
cccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggctccttggatatcatcatacacatgcaaaaattagtat |
4803500 |
T |
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| Q |
208 |
actagaattacaagaggtcaattactactagaatatttaaacctcattttgatccattggccaa |
271 |
Q |
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| T |
4803501 |
actagaattacaagaggtcaattactactagaatatttagacctcattttgatccattggccaa |
4803564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 47416341 - 47416121
Alignment:
| Q |
8 |
tagcataggactgtttccagcttgacactataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctccttaagaat |
107 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47416341 |
tagcaaaggactgtttccagcttgacacaataaaatgaagcagagttagaacaattttttaatttcttccaacatgaaataaaataatctgcttaagaat |
47416242 |
T |
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| Q |
108 |
cccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggctccttggatatcatcatacacatgcaaaaattagtat |
207 |
Q |
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| T |
47416241 |
cccaaaatgcaaaccaatcaaataatagttcaaaagtgaactgacacgacattcaatcttggcttcttggatatcatcatacacatgcaaaaattagtat |
47416142 |
T |
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| Q |
208 |
actagaattacaagaggtcaa |
228 |
Q |
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| T |
47416141 |
actagaattacaagaggtcaa |
47416121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 23832655 - 23832749
Alignment:
| Q |
177 |
gatatcatcatacacatgcaaaaattagtatactagaattacaagaggtcaattactactagaatatttaaacctcattttgatccattggccaa |
271 |
Q |
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| T |
23832655 |
gatatcatcatacacatgcaaaatttagtatactagaattacaagaggtcaattactactagaatatttagacctcattttgatccattggccaa |
23832749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 23832769 - 23832806
Alignment:
| Q |
234 |
actagaatatttaaacctcattttgatccattggccaa |
271 |
Q |
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||||||||||||| || ||||||||||||||||||||| |
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| T |
23832769 |
actagaatatttagacttcattttgatccattggccaa |
23832806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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