View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18781_low_9 (Length: 267)

Name: NF18781_low_9
Description: NF18781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18781_low_9
NF18781_low_9
[»] chr2 (2 HSPs)
chr2 (84-260)||(33522886-33523062)
chr2 (88-120)||(21356318-21356350)
[»] chr8 (3 HSPs)
chr8 (85-189)||(42475965-42476069)
chr8 (213-256)||(42475759-42475802)
chr8 (188-221)||(42475815-42475848)
[»] chr3 (3 HSPs)
chr3 (84-189)||(32862549-32862654)
chr3 (125-160)||(25925269-25925304)
chr3 (188-221)||(32862798-32862831)
[»] chr1 (1 HSPs)
chr1 (156-189)||(19511759-19511792)
[»] chr7 (2 HSPs)
chr7 (84-119)||(1350347-1350382)
chr7 (92-120)||(47559721-47559749)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 84 - 260
Target Start/End: Original strand, 33522886 - 33523062
Alignment:
Q  84 attgttacagaaataacttattcataagcacttatatatcatatgttgtgctaaggttgcttatttttggtttgtttaacttcagaatgattagtgtttc 183  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33522886 attgttacagaaataacttattcagaagcacttatatatcatatgttgtgctaagggtgcttatttttggtttgtttaacttcagaatgattagtgtttc 33522985  T
Q  184 tatattatcagtaacactatctgtattataccatttgcatacctattaaccgaaccgaactgttatggttcatctca 260  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33522986 tattttatcagtaacactatctgtattataccatttgcatacctattaaccgaaccgaactgttatggttcatctca 33523062  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 21356318 - 21356350
Alignment:
Q  88 ttacagaaataacttattcataagcacttatat 120  Q
    ||||||||||||||||| |||||||||||||||    
T  21356318 ttacagaaataacttatccataagcacttatat 21356350  T

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Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 42476069 - 42475965
Alignment:
Q  85 ttgttacagaaataacttattcataagcacttatatatcatatgttgtgctaaggttgcttatttttggtttgtttaacttcagaatgattagtgtttct 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42476069 ttgttacagaaataacttattcataagcacttatatatcatatgttgtgctaaggttgcttatttttggtttgtttaacttcagaatgattagtgtttct 42475970  T
Q  185 atatt 189  Q
    |||||    
T  42475969 atatt 42475965  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 42475759 - 42475802
Alignment:
Q  213 accatttgcatacctattaaccgaaccgaactgttatggttcat 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42475759 accatttgcatacctattaaccgaaccgaactgttatggttcat 42475802  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 42475815 - 42475848
Alignment:
Q  188 ttatcagtaacactatctgtattataccatttgc 221  Q
    ||||||||||||||||||||||||||||| ||||    
T  42475815 ttatcagtaacactatctgtattataccacttgc 42475848  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 32862549 - 32862654
Alignment:
Q  84 attgttacagaaataacttattcataagcacttatatatcatatgttgtgctaaggttgcttatttttggtttgtttaacttcagaatgattagtgtttc 183  Q
    |||| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32862549 attgctacaaaaataacttattcataagcacttatatagcatatgttgtactaaggttgcttatttttggtttgtttaacttcagaatgattagtgtttc 32862648  T
Q  184 tatatt 189  Q
    ||||||    
T  32862649 tatatt 32862654  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 25925304 - 25925269
Alignment:
Q  125 tatgttgtgctaaggttgcttatttttggtttgttt 160  Q
    ||||||||||||||||||||||||||||||||||||    
T  25925304 tatgttgtgctaaggttgcttatttttggtttgttt 25925269  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 32862831 - 32862798
Alignment:
Q  188 ttatcagtaacactatctgtattataccatttgc 221  Q
    ||||||||||||||||||||||||||||| ||||    
T  32862831 ttatcagtaacactatctgtattataccacttgc 32862798  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 19511759 - 19511792
Alignment:
Q  156 tgtttaacttcagaatgattagtgtttctatatt 189  Q
    ||||||||||||||||||||||||||||||||||    
T  19511759 tgtttaacttcagaatgattagtgtttctatatt 19511792  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 1350347 - 1350382
Alignment:
Q  84 attgttacagaaataacttattcataagcacttata 119  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1350347 attgttatagaaataacttattcataagcacttata 1350382  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 47559721 - 47559749
Alignment:
Q  92 agaaataacttattcataagcacttatat 120  Q
    |||||||||||||||||||||||||||||    
T  47559721 agaaataacttattcataagcacttatat 47559749  T

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