View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18782_high_10 (Length: 340)
Name: NF18782_high_10
Description: NF18782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18782_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 31936407 - 31936077
Alignment:
| Q |
10 |
caatgtaggcctcaaaagcatacttcttgtcgcatcttttcgaataaacagcatcgctttcaatcgactttgttgccatatcaagatcccatccggaagc |
109 |
Q |
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| T |
31936407 |
caatgtaggcctcaaaagcatacttcttgtcgcatcttttcgaataaacagcatcgctttcaatcgactttgttgccatatcaagatcccatccggaagc |
31936308 |
T |
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| Q |
110 |
tttcatcaaactaatcaacggtttcgtgaaatcatgaatagattttgaagcagccttaaacacatcttgaaacttatcaacactcaaaacacttgatttt |
209 |
Q |
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| T |
31936307 |
tttcatcaaactaatcaacggtttcgtgaaatcatgaatagattttgaagcagtcttaaacacatcttgaaacttatcaacactcaaaacacttgatttt |
31936208 |
T |
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| Q |
210 |
ttcctatcctctaaccttaactttctgattttctcattcagatttgtgttccctatttccaaatcatgaagcaatcgccgcaaccgaagaagctttgaat |
309 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31936207 |
ttcctatcctctaaccttaactgtctgattttctcattcagatttgtgttccctatttccaaatcatgaagcaatcgccgcaaccgaagaagctttgaat |
31936108 |
T |
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| Q |
310 |
ctttcgcactttttcgagtcttaagtttccc |
340 |
Q |
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| T |
31936107 |
ctttcccactttttcgagtcttaagtttccc |
31936077 |
T |
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