View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18782_high_12 (Length: 331)

Name: NF18782_high_12
Description: NF18782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18782_high_12
NF18782_high_12
[»] chr6 (1 HSPs)
chr6 (44-304)||(4281472-4281732)
[»] chr8 (5 HSPs)
chr8 (44-304)||(31710155-31710416)
chr8 (44-235)||(14674525-14674717)
chr8 (142-236)||(20133873-20133967)
chr8 (57-147)||(18974375-18974466)
chr8 (184-247)||(17535285-17535348)
[»] chr3 (2 HSPs)
chr3 (147-304)||(17594762-17594919)
chr3 (57-147)||(19807219-19807310)
[»] chr2 (1 HSPs)
chr2 (74-304)||(8165820-8166058)
[»] chr5 (1 HSPs)
chr5 (97-236)||(11203450-11203589)
[»] chr4 (1 HSPs)
chr4 (87-236)||(12325739-12325891)
[»] scaffold0076 (1 HSPs)
scaffold0076 (87-236)||(47845-47997)
[»] chr7 (2 HSPs)
chr7 (142-236)||(44358104-44358198)
chr7 (66-147)||(5331406-5331487)
[»] scaffold0208 (1 HSPs)
scaffold0208 (184-224)||(343-383)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 44 - 304
Target Start/End: Complemental strand, 4281732 - 4281472
Alignment:
Q  44 ctgtgctgcaattggcttatagttttttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaata 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4281732 ctgtgctgcaattggcttatagttttttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaata 4281633  T
Q  144 ctacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4281632 ctacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaat 4281533  T
Q  244 gaagtggagtgtgtggctttctctcaacaccaacaacgtcacgaagatccgaccgacagtg 304  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  4281532 gaagtgtagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtg 4281472  T

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Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 44 - 304
Target Start/End: Original strand, 31710155 - 31710416
Alignment:
Q  44 ctgtgctgcaattggcttatagtttt-ttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaat 142  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31710155 ctgtgctgcaattggcttatagtttttttggcaataatctagtatgataattgatattttggagacaataggttggaccttcatccctgatttcattaat 31710254  T
Q  143 actacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaa 242  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31710255 actacagcaagggtgttgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagctcggttatcggtaaa 31710354  T
Q  243 tgaagtggagtgtgtggctttctctcaacaccaacaacgtcacgaagatccgaccgacagtg 304  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  31710355 tgaagtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtg 31710416  T

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Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 14674525 - 14674717
Alignment:
Q  44 ctgtgctgcaattggcttatagtttt-ttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaat 142  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  14674525 ctgtgctgcaattggcttatagtttttttggcaatagtctagtatgataattgatattttggagacaataggttggacattcatccctgatttcattaat 14674624  T
Q  143 actacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttat 235  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||    
T  14674625 actacagcaaggttgttgtacttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttat 14674717  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 20133967 - 20133873
Alignment:
Q  142 tactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc 236  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| || ||||| ||||||||||    
T  20133967 tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc 20133873  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 18974375 - 18974466
Alignment:
Q  57 ggcttatagtttttt-ggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactac 147  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||| ||||||    
T  18974375 ggcttatagtttttttggaaataatctagtatgataatggatattttggagacaataggttggactttcatccttgattctattactactac 18974466  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 17535348 - 17535285
Alignment:
Q  184 cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaatgaag 247  Q
    |||||||||||||| ||| | ||||||||||||||||||||  || ||||||| || |||||||    
T  17535348 cctcaagattcaactaacaagctcaatttctcatctccatcgtcctggttatcagtgaatgaag 17535285  T

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Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 147 - 304
Target Start/End: Original strand, 17594762 - 17594919
Alignment:
Q  147 cagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaatgaa 246  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17594762 cagcaagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaa 17594861  T
Q  247 gtggagtgtgtggctttctctcaacaccaacaacgtcacgaagatccgaccgacagtg 304  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  17594862 gtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtg 17594919  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 19807310 - 19807219
Alignment:
Q  57 ggcttatagtttttt-ggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactac 147  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||| ||||||    
T  19807310 ggcttatagtttttttggaaataatctagtatgataatggatattttggagacaataggttggactttcatccttgattctattactactac 19807219  T

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Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 74 - 304
Target Start/End: Original strand, 8165820 - 8166058
Alignment:
Q  74 caataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactacagcaagggtgttgtacttcctacgta 173  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||   |||| |||||| |||||| |||    
T  8165820 caataatctagtatgataattgatattttggagacaataggttggaccttcattcttgatttcattaataccaca---agggcgttgtatttcctaagta 8165916  T
Q  174 attttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatcggtaaa-----------tgaagtggagtgtgtggctt 262  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||| || ||||||||||||||||            |||||||| |||| |||||    
T  8165917 attttcagggcctcaagattcaacgaatgaactcaatttctcatttccaacaacccggttatcggtaaaggaagtggaatggaagtggaatgtgcggctt 8166016  T
Q  263 tctctcaacaccaacaacgtcacgaagatccgaccgacagtg 304  Q
    ||||||||||||||| |||||||||||||| || ||||||||    
T  8166017 tctctcaacaccaacgacgtcacgaagatctgatcgacagtg 8166058  T

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Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 11203450 - 11203589
Alignment:
Q  97 tattttggagacaataggttggaccttcatccctgatttcattaatactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaa 196  Q
    |||| |||||||||||| |||||| ||||||| ||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  11203450 tattctggagacaatagattggactttcatccttgatttcattactactacagcaaaggtattgtacttcctaagtaattttcagggcctcaagattcaa 11203549  T
Q  197 caaacgaactcaatttctcatctccatcagcccggttatc 236  Q
    |||| |||||||| |||||  || ||||| ||||||||||    
T  11203550 caaatgaactcaacttctcccctacatcaacccggttatc 11203589  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 12325739 - 12325891
Alignment:
Q  87 tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctacgtaattttcaggg 183  Q
    |||||||  ||||| |||||||||||| |||||| ||||||| |||||   | | || ||||||||||||||| |||||||||||| |||||||||||||    
T  12325739 tgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcaggg 12325838  T
Q  184 cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc 236  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  12325839 cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc 12325891  T

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Target: scaffold0076 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 47845 - 47997
Alignment:
Q  87 tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctacgtaattttcaggg 183  Q
    |||||||  ||||| |||||||||||| |||||| ||||||| |||||   | | || |||||||||||| || |||||||||||| |||||||||||||    
T  47845 tgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagagtattgtacttcctaagtaattttcaggg 47944  T
Q  184 cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc 236  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  47945 cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc 47997  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 44358104 - 44358198
Alignment:
Q  142 tactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc 236  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| || ||||| ||||||||||    
T  44358104 tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc 44358198  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 5331487 - 5331406
Alignment:
Q  66 ttttttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactac 147  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||  |||| ||||||    
T  5331487 ttttttggaaataatctagtatgataagggatattttggagacaataggttggactttcatccttgattctattactactac 5331406  T

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Target: scaffold0208 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 383 - 343
Alignment:
Q  184 cctcaagattcaacaaacgaactcaatttctcatctccatc 224  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  383 cctcaagattcaacaaacaaactcaatttctcatctccatc 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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