View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18782_high_15 (Length: 325)

Name: NF18782_high_15
Description: NF18782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18782_high_15
NF18782_high_15
[»] chr3 (13 HSPs)
chr3 (38-260)||(34897717-34897940)
chr3 (238-325)||(1995486-1995573)
chr3 (249-323)||(52859272-52859346)
chr3 (1-38)||(34899938-34899975)
chr3 (256-323)||(44637986-44638052)
chr3 (253-322)||(30235416-30235484)
chr3 (290-323)||(33632866-33632899)
chr3 (253-325)||(10474400-10474471)
chr3 (255-323)||(29586380-29586447)
chr3 (255-322)||(24754702-24754769)
chr3 (255-322)||(24763699-24763766)
chr3 (255-320)||(51982549-51982613)
chr3 (260-324)||(47750274-47750337)
[»] chr6 (7 HSPs)
chr6 (247-323)||(2800566-2800642)
chr6 (247-323)||(7215807-7215883)
chr6 (255-323)||(17828532-17828599)
chr6 (248-290)||(9952993-9953035)
chr6 (246-322)||(4804493-4804569)
chr6 (257-315)||(23936305-23936365)
chr6 (256-312)||(29229149-29229204)
[»] chr1 (11 HSPs)
chr1 (247-323)||(39426254-39426330)
chr1 (249-323)||(35534741-35534813)
chr1 (246-319)||(32887735-32887807)
chr1 (251-323)||(26860010-26860081)
chr1 (255-321)||(26372298-26372362)
chr1 (255-322)||(50294026-50294093)
chr1 (256-310)||(49384627-49384680)
chr1 (248-312)||(1228496-1228560)
chr1 (246-322)||(12380831-12380907)
chr1 (246-322)||(12384898-12384974)
chr1 (248-312)||(18976260-18976324)
[»] chr8 (6 HSPs)
chr8 (249-323)||(42761757-42761831)
chr8 (246-325)||(21360318-21360400)
chr8 (253-323)||(42338008-42338077)
chr8 (244-310)||(20169125-20169190)
chr8 (290-323)||(17520426-17520459)
chr8 (245-322)||(37966397-37966473)
[»] chr2 (14 HSPs)
chr2 (248-323)||(4446852-4446927)
chr2 (248-323)||(30217517-30217592)
chr2 (249-323)||(30709154-30709228)
chr2 (247-317)||(30721564-30721632)
chr2 (246-323)||(19908824-19908899)
chr2 (248-322)||(2063399-2063472)
chr2 (247-323)||(31618724-31618798)
chr2 (255-321)||(22061433-22061498)
chr2 (272-320)||(36929763-36929810)
chr2 (290-325)||(35315286-35315321)
chr2 (251-325)||(30857638-30857711)
chr2 (289-323)||(34512022-34512056)
chr2 (249-298)||(6946335-6946384)
chr2 (290-322)||(19905926-19905958)
[»] chr7 (8 HSPs)
chr7 (248-325)||(47270592-47270668)
chr7 (286-323)||(29844335-29844372)
chr7 (255-323)||(4888511-4888579)
chr7 (255-323)||(5463867-5463934)
chr7 (255-322)||(44648009-44648076)
chr7 (244-310)||(44390835-44390900)
chr7 (247-312)||(33450562-33450627)
chr7 (277-321)||(18064601-18064643)
[»] chr4 (13 HSPs)
chr4 (247-318)||(15178628-15178699)
chr4 (250-319)||(36532673-36532741)
chr4 (253-318)||(33841766-33841830)
chr4 (256-312)||(5815267-5815322)
chr4 (255-322)||(23610687-23610754)
chr4 (252-321)||(42844148-42844216)
chr4 (251-323)||(1871321-1871392)
chr4 (255-322)||(19901881-19901948)
chr4 (255-322)||(39862562-39862629)
chr4 (248-320)||(56453777-56453848)
chr4 (289-325)||(5817977-5818013)
chr4 (290-322)||(23474156-23474188)
chr4 (246-322)||(56558324-56558400)
[»] chr5 (7 HSPs)
chr5 (255-323)||(29341039-29341106)
chr5 (253-319)||(9460597-9460662)
chr5 (255-323)||(43309152-43309220)
chr5 (255-322)||(11775838-11775905)
chr5 (248-282)||(21213953-21213987)
chr5 (290-323)||(31653079-31653112)
chr5 (291-319)||(2984389-2984417)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 38 - 260
Target Start/End: Original strand, 34897717 - 34897940
Alignment:
Q  38 agatgatataaaaaccctctctccatttcttaaatgttgtagaaatggacaaatcagctgatnnnnnnnn-tagaagtggacatcttcaataccgttttg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  34897717 agatgatataaaaaccctctctccatttcttaaatgttgtagaaatggacaaatcagctgataaaaaaaaatagaagtggacatcttcaataccgttttg 34897816  T
Q  137 ttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgttggaatccaagtcaacatgtaatagag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  34897817 ttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgtcggaatccaagtcaacatgtaattgag 34897916  T
Q  237 gtgggtgagaggggttaggatcct 260  Q
    ||||||||||||||||||||||||    
T  34897917 gtgggtgagaggggttaggatcct 34897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 1995573 - 1995486
Alignment:
Q  238 tgggtgagaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 325  Q
    ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  1995573 tgggtgacatgggttaggatcctcttcattttatcaaataaatggaagtacacaatttgaagagagatagacatagaaaatagataat 1995486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 52859346 - 52859272
Alignment:
Q  249 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    ||||| |||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  52859346 ggttatgatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagata 52859272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34899975 - 34899938
Alignment:
Q  1 atctcaacttgaaagttgaaactaccaaactttaccta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34899975 atctcaacttgaaagttgaaactaccaaactttaccta 34899938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 44638052 - 44637986
Alignment:
Q  256 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||| |||||||| |||||||||||| |||  |||||| |||||||||| ||||||||||||||||    
T  44638052 atcctcatcatttgacaaaataaatgga-gtatgcaattttgagagagataaacacataaaatagata 44637986  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 30235416 - 30235484
Alignment:
Q  253 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||| |||||||||| |||||||||||| ||||  ||||||| ||||||||||||| | |||||||||    
T  30235416 aggatcatcttcatttgttaaaataaatgg-agtatgcaatttgaagagagatagacataaaaaatagat 30235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 33632899 - 33632866
Alignment:
Q  290 caatttggagagagatagacacataaaatagata 323  Q
    ||||||||||||||||||||||||||||||||||    
T  33632899 caatttggagagagatagacacataaaatagata 33632866  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 10474400 - 10474471
Alignment:
Q  253 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 325  Q
    ||||||||||  |||||| | |||||||||| |||  |||||| |||||| ||||||||||||||||||||||    
T  10474400 aggatcctctctatttgacataataaatgga-gtatgcaattttgagagatatagacacataaaatagataat 10474471  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 29586447 - 29586380
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    ||||||||||||||   | |||||||||| |||  || |||||||||||||||||||||||||||||||    
T  29586447 gatcctcttcatttagcataataaatgga-gtatgcagtttggagagagatagacacataaaatagata 29586380  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 24754769 - 24754702
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  24754769 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24754702  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 24763766 - 24763699
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  24763766 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24763699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 51982549 - 51982613
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatag 320  Q
    |||||||| |||||   |||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  51982549 gatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagatacataaaatag 51982613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 47750274 - 47750337
Alignment:
Q  260 tcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataa 324  Q
    ||||||||||| |||||||||| | ||| |||||||| ||||| ||| ||||| |||||||||||    
T  47750274 tcttcatttgacaaaataaatg-aggtatacaatttgaagagacataaacacaaaaaatagataa 47750337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 2800566 - 2800642
Alignment:
Q  247 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2800566 ggggttaggatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagata 2800642  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 7215807 - 7215883
Alignment:
Q  247 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7215807 ggggttagtatcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagata 7215883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 17828532 - 17828599
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||| |||||| || ||||| |||| |||  ||||||||||||||||||||||||||||||||||    
T  17828532 gatcctctacatttggtataataattgga-gtatgcaatttggagagagatagacacataaaatagata 17828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 9952993 - 9953035
Alignment:
Q  248 gggttaggatcctcttcatttgataaaataaatggaagtacac 290  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  9952993 gggttaagatcctctccatttgataaaataaatggaagtacac 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 4804569 - 4804493
Alignment:
Q  246 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||| | |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||    
T  4804569 aggggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagat 4804493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 23936365 - 23936305
Alignment:
Q  257 tcctcttcatttgataaaataaatggaagtacacaatttg--gagagagatagacacataa 315  Q
    |||||| ||||||||||| | |||| |||||||||||| |  |||||||||||||||||||    
T  23936365 tcctctccatttgataaattgaatgaaagtacacaattcggagagagagatagacacataa 23936305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 29229204 - 29229149
Alignment:
Q  256 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 312  Q
    ||||||| |||||| || |||||||||| |||  |||||||||||||||||||||||    
T  29229204 atcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacaca 29229149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 39426330 - 39426254
Alignment:
Q  247 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39426330 ggggttagtatcatctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 39426254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 35534741 - 35534813
Alignment:
Q  249 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  35534741 ggttagtatcctctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagata 35534813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 32887735 - 32887807
Alignment:
Q  246 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 319  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  32887735 agggattaggatcctcttcatttgataaaataaatgg-agtacacagtttagagaaagatagacacataaaata 32887807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 26860010 - 26860081
Alignment:
Q  251 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||| |||  ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  26860010 ttaggatcatctctatttgataaaataaatgga-gtacataatttgaagagagatagacacataaaatagata 26860081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 26372362 - 26372298
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 321  Q
    ||||||||  ||||||||||||||||||||||| | |||||  |||||||||||||| |||||||||    
T  26372362 gatcctctcaatttgataaaataaatggaagtagataattt--agagagatagacacgtaaaataga 26372298  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 50294026 - 50294093
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||||||||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  50294026 gatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagat 50294093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 49384627 - 49384680
Alignment:
Q  256 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 310  Q
    ||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||    
T  49384627 atcctctccatttgttaaaataaatggaa-tatacaatttagagagagatagaca 49384680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 1228496 - 1228560
Alignment:
Q  248 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 312  Q
    |||||| ||||||||||||||  |||||||||||||  |   ||||||||||||||| |||||||    
T  1228496 gggttaagatcctcttcatttactaaaataaatggagttttgcaatttggagagagacagacaca 1228560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 12380831 - 12380907
Alignment:
Q  246 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12380831 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 12384898 - 12384974
Alignment:
Q  246 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12384898 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 18976260 - 18976324
Alignment:
Q  248 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 312  Q
    |||||| |||||||| |||||| |||||||||| ||  |   |||||||||||||||||||||||    
T  18976260 gggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacaca 18976324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 42761831 - 42761757
Alignment:
Q  249 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  42761831 ggttaggatcctcttcacttaataaaataaatggaagtacgcaatttgaagagagatagacacataaaatagata 42761757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 21360400 - 21360318
Alignment:
Q  246 aggggttaggatcctcttcatttgataaaataaatggaag----tacacaatttggagagagatagacacataaaatagataat 325  Q
    ||||||||||||||||| ||||||||||||||||| ||||    |||| |||||||||||||||| |||||||| |||||||||    
T  21360400 aggggttaggatcctctccatttgataaaataaat-gaagtacatacataatttggagagagataaacacataatatagataat 21360318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 42338008 - 42338077
Alignment:
Q  253 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    ||||||||||||||||||||||||||||  ||||| | |||||||||||| ||| |||  |||||||||||    
T  42338008 aggatcctcttcatttgataaaataaat-taagtatataatttggagagatatatacatgtaaaatagata 42338077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 20169190 - 20169125
Alignment:
Q  244 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 310  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  20169190 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 20169125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 17520459 - 17520426
Alignment:
Q  290 caatttggagagagatagacacataaaatagata 323  Q
    ||||||||||||| ||||||||||||||||||||    
T  17520459 caatttggagagatatagacacataaaatagata 17520426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 37966397 - 37966473
Alignment:
Q  245 gaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    ||||||||| |||||||| ||||||  ||||||||||||| |   ||||||| ||||||||| ||||| |||||||||    
T  37966397 gaggggttaagatcctctccatttggcaaaataaatggaa-tttgcaatttgaagagagataaacacaaaaaatagat 37966473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 4446852 - 4446927
Alignment:
Q  248 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    ||||||| ||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  4446852 gggttagtatcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagata 4446927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 30217592 - 30217517
Alignment:
Q  248 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  30217592 gggttaggatcctctctatttgataaaataaatggaagcacacaatttagagtgagatagacacataaaatagata 30217517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 30709228 - 30709154
Alignment:
Q  249 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||||||||| ||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  30709228 ggttaggatcctctccatcttataaaatcaatgaaagtacacaatttggagagagatagacacataaaatagata 30709154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 30721564 - 30721632
Alignment:
Q  247 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaa 317  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  30721564 ggggttaagatccgctccatttgataaaataaatagaagtacacaatttg--gagagatagacacataaaa 30721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 19908899 - 19908824
Alignment:
Q  246 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||| | |||||||||||||||||| ||||||||| ||||  |||||||||| |||||||||||||||||||||||    
T  19908899 aggggtaaagatcctcttcatttgatataataaatgg-agtatgcaatttggag-gagatagacacataaaatagata 19908824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 2063472 - 2063399
Alignment:
Q  248 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||| |||||||||||||||| ||||||||| || ||   ||||||||||||||||||||||| |||||||||    
T  2063472 gggttaagatcctcttcatttgacaaaataaataga-gtttgcaatttggagagagatagacacaaaaaatagat 2063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 31618724 - 31618798
Alignment:
Q  247 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||||||||||| |||||||| ||| |||||| |||| |||||||||||| ||||||| | ||||||||||||    
T  31618724 ggggttaggatcctctccatttgat-aaagaaatgg-agtatacaatttggagaaagatagatatataaaatagata 31618798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 22061433 - 22061498
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 321  Q
    ||||||||  |||||| |||||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  22061433 gatcctctcaatttgacaaaataaatg-aagtatgcaatttgaagagagatagacacataaaataga 22061498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 36929810 - 36929763
Alignment:
Q  272 aaaataaatggaagtacacaatttggagagagatagacacataaaatag 320  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||    
T  36929810 aaaataaatgga-gtatgcaatttggagagagatagacacataaaatag 36929763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 35315286 - 35315321
Alignment:
Q  290 caatttggagagagatagacacataaaatagataat 325  Q
    ||||||| ||||||||||||||||||||||||||||    
T  35315286 caatttgaagagagatagacacataaaatagataat 35315321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 30857638 - 30857711
Alignment:
Q  251 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 325  Q
    |||||||||||| ||||| | |||||||||||| |||   |||||| |||||| |||||||| ||||||||||||    
T  30857638 ttaggatcctctccatttcacaaaataaatgga-gtatgtaatttgaagagaggtagacacaaaaaatagataat 30857711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 34512022 - 34512056
Alignment:
Q  289 acaatttggagagagatagacacataaaatagata 323  Q
    |||||||||||| ||||||||||||||||||||||    
T  34512022 acaatttggagaaagatagacacataaaatagata 34512056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 6946384 - 6946335
Alignment:
Q  249 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttgga 298  Q
    |||||||||||||  |||||||||||||||||| || | |||||||||||    
T  6946384 ggttaggatcctccccatttgataaaataaatgaaaatgcacaatttgga 6946335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 19905958 - 19905926
Alignment:
Q  290 caatttggagagagatagacacataaaatagat 322  Q
    |||||| ||||||||||||||||||||||||||    
T  19905958 caattttgagagagatagacacataaaatagat 19905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 47270668 - 47270592
Alignment:
Q  248 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataat 325  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||    
T  47270668 gggttaggatcctctctatttgataaaataaatggaattacacaatttagagatagatagacacat-aaatagataat 47270592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 29844372 - 29844335
Alignment:
Q  286 tacacaatttggagagagatagacacataaaatagata 323  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29844372 tacacaatttggagagagatagacacataaaatagata 29844335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 4888579 - 4888511
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| ||||||||||    
T  4888579 gatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagata 4888511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 5463867 - 5463934
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||| ||||||||| |||||||  | ||| |||||||||||||| ||| ||||||||||||||||    
T  5463867 gatcctctccatttgatataataaatata-gtatacaatttggagagatataaacacataaaatagata 5463934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 44648076 - 44648009
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  44648076 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 44648009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 44390900 - 44390835
Alignment:
Q  244 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 310  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  44390900 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 44390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 33450627 - 33450562
Alignment:
Q  247 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 312  Q
    ||||||| |||||||| |||||| |||||||||| ||  |   |||||||||||||||||||||||    
T  33450627 ggggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacaca 33450562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 18064643 - 18064601
Alignment:
Q  277 aaatggaagtacacaatttggagagagatagacacataaaataga 321  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  18064643 aaatggaa-tacacaatt-ggagagagatagacacataaaataga 18064601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 15178628 - 15178699
Alignment:
Q  247 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 318  Q
    ||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||    
T  15178628 ggggttaggattctctccatttgataaaatgaatggaagtacataatttgaagagagataaacacataaaat 15178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 36532741 - 36532673
Alignment:
Q  250 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 319  Q
    |||| |||||||| ||| |||||||||||||||| || |||||||| |||||||||||||||||||||||    
T  36532741 gttaagatcctctccatctgataaaataaatgga-gttcacaatttagagagagatagacacataaaata 36532673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 33841766 - 33841830
Alignment:
Q  253 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 318  Q
    |||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||||||| |||||    
T  33841766 aggatcctctccatttgttaaagtaaatgga-gtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 5815267 - 5815322
Alignment:
Q  256 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 312  Q
    ||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  5815267 atcctctccatttgataaaataaatgg-agtacaaaattttgagagagatagacaca 5815322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 23610754 - 23610687
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||||| ||||||||||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  23610754 gatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 23610687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 42844148 - 42844216
Alignment:
Q  252 taggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 321  Q
    ||||||||||| ||| | ||||||||||| ||  || |||||||||||| ||||||||||||||||||||    
T  42844148 taggatcctctccatattataaaataaatagagtta-acaatttggagatagatagacacataaaataga 42844216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 1871392 - 1871321
Alignment:
Q  251 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    ||||||||||||  |||||| |||||||||||| |||  ||||||||||||||||||||| | || |||||||    
T  1871392 ttaggatcctctcaatttgacaaaataaatgga-gtatgcaatttggagagagatagacaaaaaatatagata 1871321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 19901881 - 19901948
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  19901881 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 19901948  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 39862629 - 39862562
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||||| ||||||||||||||||| ||| |   ||| || |||||||||||||||| |||||||||    
T  39862629 gatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagat 39862562  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 56453777 - 56453848
Alignment:
Q  248 gggttaggatcctcttcatttgata-aaataaatggaagtacacaatttggagagagatagacacataaaatag 320  Q
    |||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||||||||||||||| |||||||    
T  56453777 gggttaagatcctctccattt-atagaaataaatggaag-atgcaatttggagagagatagacacaaaaaatag 56453848  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 5818013 - 5817977
Alignment:
Q  289 acaatttggagagagatagacacataaaatagataat 325  Q
    |||||||||||||||||||||||| |||| |||||||    
T  5818013 acaatttggagagagatagacacaaaaaagagataat 5817977  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 23474188 - 23474156
Alignment:
Q  290 caatttggagagagatagacacataaaatagat 322  Q
    |||||||| ||||||||||||||||||||||||    
T  23474188 caatttggggagagatagacacataaaatagat 23474156  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 56558400 - 56558324
Alignment:
Q  246 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  56558400 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 56558324  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 29341106 - 29341039
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    |||||||| |||||| || |||||||||| |||  ||||||||||||||||||||||| ||||||||||    
T  29341106 gatcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacacagaaaatagata 29341039  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 9460597 - 9460662
Alignment:
Q  253 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 319  Q
    |||||||||| |||||| |||||||||| || |||  ||||||||||||||||||||||||| ||||    
T  9460597 aggatcctctccatttggtaaaataaataga-gtatgcaatttggagagagatagacacatataata 9460662  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 43309220 - 43309152
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 323  Q
    ||||||||| |||||||||||||||||||  |   ||| ||||||||||||||||| | ||||||||||    
T  43309220 gatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagata 43309152  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 11775905 - 11775838
Alignment:
Q  255 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 322  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  11775905 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 11775838  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 21213987 - 21213953
Alignment:
Q  248 gggttaggatcctcttcatttgataaaataaatgg 282  Q
    ||||||||||||||| |||||||||||||||||||    
T  21213987 gggttaggatcctctccatttgataaaataaatgg 21213953  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 31653112 - 31653079
Alignment:
Q  290 caatttggagagagatagacacataaaatagata 323  Q
    ||||||||||||||||| ||||||||||||||||    
T  31653112 caatttggagagagataaacacataaaatagata 31653079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 2984389 - 2984417
Alignment:
Q  291 aatttggagagagatagacacataaaata 319  Q
    |||||||||||||||||||||||||||||    
T  2984389 aatttggagagagatagacacataaaata 2984417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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