View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18782_high_1_N (Length: 537)
Name: NF18782_high_1_N
Description: NF18782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18782_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 38816174 - 38816652
Alignment:
| Q |
1 |
taactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctc |
100 |
Q |
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| T |
38816174 |
taactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctc |
38816273 |
T |
|
| Q |
101 |
taacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccc |
200 |
Q |
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| T |
38816274 |
taacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccc |
38816373 |
T |
|
| Q |
201 |
taagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaat |
300 |
Q |
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| T |
38816374 |
taagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaat |
38816473 |
T |
|
| Q |
301 |
gttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcacc |
400 |
Q |
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| T |
38816474 |
gttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcacc |
38816573 |
T |
|
| Q |
401 |
gagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactat |
479 |
Q |
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| T |
38816574 |
gagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactat |
38816652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 195 - 344
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
195 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
294 |
Q |
| |
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|||||||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| | |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
295 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
344 |
Q |
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|||| |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 505
Target Start/End: Original strand, 38816901 - 38816932
Alignment:
| Q |
474 |
aactatttttaacctgcagcgactctctgttg |
505 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38816901 |
aactatttttaacctgcagcgactctctgttg |
38816932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 453
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
415 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
453 |
Q |
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|
| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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